HHsearch alignment for GI: 254780263 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.82  E-value=1.4e-08  Score=72.33  Aligned_cols=135  Identities=27%  Similarity=0.278  Sum_probs=81.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECC--CEEEEEEECCCCHHHHHHHHHH
Q ss_conf             999904689887899999987644420013126868698629206-3789998219--9089998478730246779877
Q gi|254780263|r   15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETD--KRFYSHIDCPGHADYVKNMITG   91 (392)
Q Consensus        15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~g   91 (392)
T Consensus         2 i~ivG~~~vGKTsli~r~~~~~f~--------~----~~--~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~   67 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGTFV--------E----EY--DPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLY   67 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCC--------C----CC--CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf             999996996799999999619599--------8----77--883004899999976699999999799962355788999


Q ss_pred             HHCCCCEEEEECCCCCCCCCHHHHH----H-HHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf             4002331452012344332106778----8-88631---87602331002333561222110123210011101453221
Q gi|254780263|r   92 ATQADGAILVCAAEDGPKPQTREHI----L-LARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT  163 (392)
Q Consensus        92 ~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~  163 (392)
T Consensus        68 ~~~a~~~ilvfd~~~~---~Sf~~i~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~---V~~~e~~~~a~~~----~~  136 (160)
T cd00876          68 IRQGDGFILVYSITDR---ESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQ---VSKEEGKALAKEW----GC  136 (160)
T ss_pred             HHHCCEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHCCC---CCHHHHHHHHHHC----CC
T ss_conf             7643689997328987---89999999999999972878862-999997456223078---9999999999984----99


Q ss_pred             ECCCCEEEEEE
Q ss_conf             02331146764
Q gi|254780263|r  164 PIIRGSALCAL  174 (392)
Q Consensus       164 pii~~sa~~g~  174 (392)
T Consensus       137 ~y~e~Sak~g~  147 (160)
T cd00876         137 PFIETSAKDNI  147 (160)
T ss_pred             EEEEECCCCCC
T ss_conf             79998479894