HHsearch alignment for GI: 254780263 and conserved domain: cd00880
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=1.5e-19 Score=140.27 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=108.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC-EEEEEEECCCC-------HHHHHHH
Q ss_conf 990468988789999998764442001312686869862920637899982199-08999847873-------0246779
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK-RFYSHIDCPGH-------ADYVKNM 88 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~iiD~PGH-------~~f~~~m 88 (392)
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~------v-----s~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~ 69 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------V-----SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA 69 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCE------E-----CCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 91979989999999995899610------1-----698998656458999954786599972798522231016899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 87740023314520123443321067788886318760233100233356122211012321001110145322102331
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
T Consensus 70 ~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p-~i~v~NK~D~~~~~~~~~~~~-~~~~~~~~---~~~~~i~~i 144 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-LRLLILLL---LLGLPVIAV 144 (163)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEECEECCCHHHHHHHHH-HHHHHHHH---CCCCEEEEE
T ss_conf 9999868989999878999755669999999971974-278853420678789999999-99999876---799859999
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780263|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
T Consensus 145 SA~~g~----------gi~~L~~~i~e 161 (163)
T cd00880 145 SALTGE----------GIDELREALIE 161 (163)
T ss_pred ECCCCC----------CHHHHHHHHHH
T ss_conf 789897----------99999999995