HHsearch alignment for GI: 254780263 and conserved domain: cd01868
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.80 E-value=1.8e-08 Score=71.55 Aligned_cols=141 Identities=22% Similarity=0.176 Sum_probs=80.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC--CEEEEEEECCCCHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--3789998219--9089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD--KRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~--~~~i~iiD~PGH~~f~~~m 88 (392)
T Consensus 4 ~Kiv~iGd~~VGKTsli~r~~~~------------~f~~~~~--~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN------------EFNLDSK--STIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCC--CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 89999999997899999999729------------8999889--874478789999999999999999899972126789
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHH-HHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433210677-8888631---876023310023335612221101232100111014532210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREH-ILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh-~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
T Consensus 70 ~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~-iilVgnK~DL~~~r~---Vs~~e~~~~a~~~----~~~ 141 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRA---VPTEEAKAFAEKN----GLS 141 (165)
T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHCC---CCHHHHHHHHHHC----CCE
T ss_conf 98733205148986269889999999999999985557735-987023478688578---8899999999985----997
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
T Consensus 142 ~~E~SAk~g~n 152 (165)
T cd01868 142 FIETSALDGTN 152 (165)
T ss_pred EEEECCCCCCC
T ss_conf 99967888929