HHsearch alignment for GI: 254780263 and conserved domain: cd01875
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.62 E-value=1.8e-07 Score=65.39 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=85.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899---982199089998478730246779
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
T Consensus 3 ~~KivlvGd~~VGKTsli~r~~~~~------------F~~~y--~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA------------FPKEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHH
T ss_conf 1899999999989999999997299------------99864--662100046789999999999998588870035677
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHH------HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCC---------CCCE
Q ss_conf 8774002331452012344332106778------88863-187602331002333561222110123---------2100
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHI------LLARQ-IGISSIVVYMNKVDAVDDDELLDISEY---------EIRD 152 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~------~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~---------~i~~ 152 (392)
T Consensus 69 ~~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~p-iiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~ 144 (191)
T cd01875 69 TLSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred HHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8774478689999857977---8899999999999997096997-89998880102345778887764137556999999
Q ss_pred EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 11101453221023311467641144456521233203443102
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
T Consensus 145 ~a~~~~---~~~y~EtSAkt~~----------nV~e~F~~l~k~ 175 (191)
T cd01875 145 LAKQIH---AVKYLECSALNQD----------GVKEVFAEAVRA 175 (191)
T ss_pred HHHHHC---CCEEEECCCCCCC----------CHHHHHHHHHHH
T ss_conf 999809---9889990689896----------989999999999