HHsearch alignment for GI: 254780263 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.62  E-value=1.8e-07  Score=65.39  Aligned_cols=154  Identities=17%  Similarity=0.140  Sum_probs=85.4

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHH
Q ss_conf             27999990468988789999998764442001312686869862920637899---982199089998478730246779
Q gi|254780263|r   12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNM   88 (392)
Q Consensus        12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~m   88 (392)
T Consensus         3 ~~KivlvGd~~VGKTsli~r~~~~~------------F~~~y--~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~   68 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNA------------FPKEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR   68 (191)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHH
T ss_conf             1899999999989999999997299------------99864--662100046789999999999998588870035677


Q ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHHH------HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCC---------CCCE
Q ss_conf             8774002331452012344332106778------88863-187602331002333561222110123---------2100
Q gi|254780263|r   89 ITGATQADGAILVCAAEDGPKPQTREHI------LLARQ-IGISSIVVYMNKVDAVDDDELLDISEY---------EIRD  152 (392)
Q Consensus        89 i~g~~~~D~ailvVda~~G~~~QT~eh~------~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~---------~i~~  152 (392)
T Consensus        69 ~~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~p-iiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~  144 (191)
T cd01875          69 TLSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA  144 (191)
T ss_pred             HHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             8774478689999857977---8899999999999997096997-89998880102345778887764137556999999


Q ss_pred             EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf             11101453221023311467641144456521233203443102
Q gi|254780263|r  153 LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH  196 (392)
Q Consensus       153 ~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~  196 (392)
T Consensus       145 ~a~~~~---~~~y~EtSAkt~~----------nV~e~F~~l~k~  175 (191)
T cd01875         145 LAKQIH---AVKYLECSALNQD----------GVKEVFAEAVRA  175 (191)
T ss_pred             HHHHHC---CCEEEECCCCCCC----------CHHHHHHHHHHH
T ss_conf             999809---9889990689896----------989999999999