HHsearch alignment for GI: 254780263 and conserved domain: cd01876
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.5e-20 Score=141.50 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=105.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC-------------
Q ss_conf 9999046898878999999876444200131268686986292063789998219908999847873-------------
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH------------- 81 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH------------- 81 (392)
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~-----~~~vs-----~~~gtTr~i~~--~~~-~~~~~~vDtPG~g~~~~~~~~~~~~ 68 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-----LARTS-----KTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKW 68 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-----EEEEE-----CCCCEEEEEEE--EEE-CCEEEEEECCCCHHCCCCHHHHHHH
T ss_conf 89998999999999999968996-----27860-----78977852058--853-8779999657840101687799999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 02467798774002331452012344332106778888631876023310023335612221101232100111014532
Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
T Consensus 69 ~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp-~iiVlNKiDlv~~~~~~~~~~-~~~~~l~~~--~~ 144 (170)
T cd01876 69 GKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALK-EIKKELKLF--EI 144 (170)
T ss_pred HHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEEEECCCHHHHHHHHH-HHHHHHHCC--CC
T ss_conf 99999999840633499999963223748689999999876998-799998675378778999999-999987421--79
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 21023311467641144456521233203443102
Q gi|254780263|r 162 DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 162 ~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
T Consensus 145 ~~~ii~iSA~~g----------~gi~~L~~~I~~~ 169 (170)
T cd01876 145 DPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred CCEEEEEECCCC----------CCHHHHHHHHHHH
T ss_conf 983999988999----------7799999999985