HHsearch alignment for GI: 254780263 and conserved domain: cd01891

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00  E-value=0  Score=350.61  Aligned_cols=184  Identities=32%  Similarity=0.437  Sum_probs=164.6

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf             999990468988789999998764442----0013126868698629206378999821990899984787302467798
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf             89999068987999999999974876304652168614758888728763345899998998899998998477777898


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE---EEECC
Q ss_conf             774002331452012344332106778888631876023310023335612221101232100111014532---21023
Q gi|254780263|r   90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD---DTPII  166 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~---~~pii  166 (392)
T Consensus        84 ~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~-~iv~iNK~D~~~a--~~~~v~~ei~~~~~~~~~~~~~~~~pii  160 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVL  160 (194)
T ss_pred             HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             776434467898653789758999999999872997-4998856458988--8999999999999863999333588578


Q ss_pred             CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf             3114676411444565212332034431025222
Q gi|254780263|r  167 RGSALCALQGTNKELGEDSIHALMKAVDTHIPTP  200 (392)
Q Consensus       167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p  200 (392)
T Consensus       161 ~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P  194 (194)
T cd01891         161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP  194 (194)
T ss_pred             EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             7256553357788656465999999999658898