HHsearch alignment for GI: 254780263 and conserved domain: cd01891
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=350.61 Aligned_cols=184 Identities=32% Similarity=0.437 Sum_probs=164.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 999990468988789999998764442----0013126868698629206378999821990899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 89999068987999999999974876304652168614758888728763345899998998899998998477777898
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE---EEECC
Q ss_conf 774002331452012344332106778888631876023310023335612221101232100111014532---21023
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD---DTPII 166 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~---~~pii 166 (392)
T Consensus 84 ~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~-~iv~iNK~D~~~a--~~~~v~~ei~~~~~~~~~~~~~~~~pii 160 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 776434467898653789758999999999872997-4998856458988--8999999999999863999333588578
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 3114676411444565212332034431025222
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
T Consensus 161 ~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 7256553357788656465999999999658898