HHsearch alignment for GI: 254780263 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.24 E-value=0.059 Score=31.20 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=71.4
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9999-046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
T Consensus 2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~-----------D~g~an~---~~D~viiD~~aG--~~~~~~~~~~ 65 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDA-----------DLGLANL---DYDYIIIDTGAG--ISDNVLDFFL 65 (139)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-----------CCCCCCC---CCCEEEEECCCC--CCHHHHHHHH
T ss_conf 89964999983999999999999978996999989-----------8999657---999999948999--8778999999
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHH-HHHHCCCCCEEEEECCCCCCCC-HHHHHHCCCCCCEEE
Q ss_conf 023314520123443321067788-8863187602331002333561-222110123210011
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQTREHIL-LARQIGISSIVVYMNKVDAVDD-DELLDISEYEIRDLL 154 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~~-l~~~lgi~~iIv~iNKmD~v~~-~~~~~~i~~~i~~~l 154 (392)
T Consensus 66 ~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~kfL 128 (139)
T cd02038 66 AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFL 128 (139)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 589579995897067999999999999963999759999568999999999999999999980