HHsearch alignment for GI: 254780263 and conserved domain: cd03694
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.79 E-value=3.7e-20 Score=144.04 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=81.8
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 10000000135544543014874245348967999506-87432125412100121144321001366641124543220
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVP 286 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~ 286 (392)
T Consensus 1 ~~~~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f~~v~VrsIq~~~~~v~~a~aG~~~~~~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CCCCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCC
T ss_conf 95653137986985689899984571538999999216789667789988998882978976998988998699999906
Q ss_pred CHHEEEC
Q ss_conf 2117732
Q gi|254780263|r 287 RGRVVCA 293 (392)
Q Consensus 287 rGdvl~~ 293 (392)
T Consensus 81 rG~VL~s 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CCCEEEC
T ss_conf 7669969