HHsearch alignment for GI: 254780263 and conserved domain: cd03694

>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.79  E-value=3.7e-20  Score=144.04  Aligned_cols=86  Identities=23%  Similarity=0.359  Sum_probs=81.8

Q ss_pred             CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf             10000000135544543014874245348967999506-87432125412100121144321001366641124543220
Q gi|254780263|r  208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVP  286 (392)
Q Consensus       208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~  286 (392)
T Consensus         1 ~~~~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f~~v~VrsIq~~~~~v~~a~aG~~~~~~l~~i~~~~i~   80 (87)
T cd03694           1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR   80 (87)
T ss_pred             CCCCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCC
T ss_conf             95653137986985689899984571538999999216789667789988998882978976998988998699999906


Q ss_pred             CHHEEEC
Q ss_conf             2117732
Q gi|254780263|r  287 RGRVVCA  293 (392)
Q Consensus       287 rGdvl~~  293 (392)
T Consensus        81 rG~VL~s   87 (87)
T cd03694          81 KGMVLVS   87 (87)
T ss_pred             CCCEEEC
T ss_conf             7669969