HHsearch alignment for GI: 254780263 and conserved domain: cd03699

>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.63  E-value=2.7e-08  Score=70.53  Aligned_cols=84  Identities=19%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEE
Q ss_conf             1000000013554454301487424534896799950687432125412100121144321001366641124-543220
Q gi|254780263|r  208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGV-NRADVP  286 (392)
Q Consensus       208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi-~~~di~  286 (392)
T Consensus         1 LrALifDS~yD~y~Gvv~~vRV~~G~lk~gd~i~~~~t~~~~~v~evG~~~P~~~~~~~L~aGeV-Gyii~gik~~~d~~   79 (86)
T cd03699           1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQV-GYIIAGIKTVKDAR   79 (86)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEHHHCCCCCEEEEEEECCCCCCCCCEECCCCC-CEEEECCCCCCCCC
T ss_conf             90899986722788789999997999917985223348996385598871799763884947840-48997342015573


Q ss_pred             CHHEEE
Q ss_conf             211773
Q gi|254780263|r  287 RGRVVC  292 (392)
Q Consensus       287 rGdvl~  292 (392)
T Consensus        80 vGDTit   85 (86)
T cd03699          80 VGDTIT   85 (86)
T ss_pred             CCCEEE
T ss_conf             447875