HHsearch alignment for GI: 254780263 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.70 E-value=7.8e-08 Score=67.64 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=83.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC---CCEEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--378999821---9908999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET---DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~---~~~~i~iiD~PGH~~f~~~ 87 (392)
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~----------~f--~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGA----------VF--PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC----------CC--CCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHH
T ss_conf 9999999599588999999997888----------66--88888864578899999978997999999979998400678
Q ss_pred HHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 9877400233145201234433-210677888863--1876023310023335612221101232100111014532210
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPK-PQTREHILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
T Consensus 69 ~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p-~ilVgNK~DL~~~r~---V~~~e~~~~a~~~----~~~ 140 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAE---VTDAQAQAFAQAN----QLK 140 (164)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCC---CCHHHHHHHHHHC----CCE
T ss_conf 99997642689999707746689999999999997668986-899987224452455---6999999999988----998
Q ss_pred CCCCEEEEEE
Q ss_conf 2331146764
Q gi|254780263|r 165 IIRGSALCAL 174 (392)
Q Consensus 165 ii~~sa~~g~ 174 (392)
T Consensus 141 ~~E~SAk~g~ 150 (164)
T cd04101 141 FFKTSALRGV 150 (164)
T ss_pred EEEECCCCCC
T ss_conf 9998668890