HHsearch alignment for GI: 254780263 and conserved domain: cd04107
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.78 E-value=1.1e-08 Score=72.86 Aligned_cols=142 Identities=19% Similarity=0.108 Sum_probs=81.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC-C--EEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--3789998219-9--08999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD-K--RFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~-~--~~i~iiD~PGH~~f~~~ 87 (392)
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~------------F~~~--y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~~~~l 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI------------FSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCC
T ss_conf 979999999978999999998299------------9998--88875677899899967981999999868998322200
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHH--HH------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 98774002331452012344332106778--88------86318760233100233356122211012321001110145
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHI--LL------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~--~l------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
T Consensus 67 ~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ip-iilVgNK~DL~~~~~---v~~ee~~~~a~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA---KDGEQMDQFCKENGF 142 (201)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCC---CCHHHHHHHHHHCCC
T ss_conf 3755557764799982798899998999999999986213789871-899866556411256---899999999997799
Q ss_pred EEEEECCCCEEEEEEE
Q ss_conf 3221023311467641
Q gi|254780263|r 160 SDDTPIIRGSALCALQ 175 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~ 175 (392)
T Consensus 143 ---~~~~EtSAktg~n 155 (201)
T cd04107 143 ---IGWFETSAKEGIN 155 (201)
T ss_pred ---CEEEEECCCCCCC
T ss_conf ---8099977999949