HHsearch alignment for GI: 254780263 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.46 E-value=7.3e-07 Score=61.64 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=79.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EE--ECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-98--219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SY--ETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~--~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
T Consensus 2 KivlvGd~~VGKTsli~r~~~~------------~F~~~--y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRG------------YFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 8999997997699999999709------------99998--688378999999999999999999847785000035567
Q ss_pred HHHCCCCEEEEECCCCCC-CCC--HHHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE---EEEE---
Q ss_conf 740023314520123443-321--0677888863-18760233100233356122211012321001110---1453---
Q gi|254780263|r 91 GATQADGAILVCAAEDGP-KPQ--TREHILLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE---HKYS--- 160 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~-~~Q--T~eh~~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~---~~~~--- 160 (392)
T Consensus 68 ~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 643786459999789878999999999999997497997-8999988004653235677766304665899999999982
Q ss_pred EEEECCCCEEEEEEE
Q ss_conf 221023311467641
Q gi|254780263|r 161 DDTPIIRGSALCALQ 175 (392)
Q Consensus 161 ~~~pii~~sa~~g~~ 175 (392)
T Consensus 147 ~~~~y~EtSAkt~~n 161 (189)
T cd04134 147 NALRYLECSAKLNRG 161 (189)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 997899968067949