HHsearch alignment for GI: 254780263 and conserved domain: cd04136

>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.52  E-value=3.2e-07  Score=63.81  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=80.7

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE-EEEEEEECC--CEEEEEEECCCCHHHHHHHH
Q ss_conf             799999046898878999999876444200131268686986292063-789998219--90899984787302467798
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA-TAHVSYETD--KRFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         2 fKivllGd~~VGKTsli~r~~~~~------------f~~~--y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGI------------FVEK--YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD   67 (163)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf             199998999988999999997195------------9886--69954206999999999999998645765445556789


Q ss_pred             HHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf             7740023314520123443321067788-----8863---1876023310023335612221101232100111014532
Q gi|254780263|r   90 TGATQADGAILVCAAEDGPKPQTREHIL-----LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD  161 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~  161 (392)
T Consensus        68 ~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~p-iilVGnK~Dl~~~r~---v~~~~~~~~a~~~----  136 (163)
T cd04136          68 LYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERV---VSREEGQALARQW----  136 (163)
T ss_pred             HHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCHHHHCC---CCHHHHHHHHHHC----
T ss_conf             88346876999704898---899999999999999861888886-787623547264078---9999999999984----


Q ss_pred             EEECCCCEEEEEEE
Q ss_conf             21023311467641
Q gi|254780263|r  162 DTPIIRGSALCALQ  175 (392)
Q Consensus       162 ~~pii~~sa~~g~~  175 (392)
T Consensus       137 ~~~~~E~SAk~~~n  150 (163)
T cd04136         137 GCPFYETSAKSKIN  150 (163)
T ss_pred             CCEEEEECCCCCCC
T ss_conf             99899974487805