HHsearch alignment for GI: 254780263 and conserved domain: cd04157

>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20  E-value=6.6e-11  Score=86.70  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf             99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r   14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT   93 (392)
Q Consensus        14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~   93 (392)
T Consensus         1 ~Il~lGl~~sGKTtil~~l~~~~~~-------~~~------~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~   67 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQ-------SQI------IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYK   67 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCCC-------CCC------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHC
T ss_conf             9999999999889999999728987-------564------168507578999839988999985887442055898705


Q ss_pred             CCCCEEEEECCCCC-CCCCHHHHHHHH-H---H--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEEEC
Q ss_conf             02331452012344-332106778888-6---3--18760233100233356122211012321001110145-322102
Q gi|254780263|r   94 QADGAILVCAAEDG-PKPQTREHILLA-R---Q--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPI  165 (392)
Q Consensus        94 ~~D~ailvVda~~G-~~~QT~eh~~l~-~---~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~pi  165 (392)
T Consensus        68 ~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~P-iLI~~NK~D~~~~~~-~~----ei~~~l~l~~~~~~~~~i  141 (162)
T cd04157          68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDKPWHI  141 (162)
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCE-EEEEEECCCCCCCCC-HH----HHHHHHCHHHHCCCCEEE
T ss_conf             674489997076388899999999999717655179845-999981477889999-99----999885866524896499


Q ss_pred             CCCEEEEE
Q ss_conf             33114676
Q gi|254780263|r  166 IRGSALCA  173 (392)
Q Consensus       166 i~~sa~~g  173 (392)
T Consensus       142 ~~~SA~tG  149 (162)
T cd04157         142 FASNALTG  149 (162)
T ss_pred             EEEECCCC
T ss_conf             99789789