HHsearch alignment for GI: 254780263 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.80 E-value=2.1e-08 Score=71.21 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=74.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
T Consensus 2 IlilGLd~aGKTTil~~l~~~~--------~~~~------~~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--------SLES------VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSG 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--------CCCC------CCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 9999679998999999981699--------8765------3563277469999899999998537528886569987117
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHH--HHHCCCCCEEEEECCCCCCCC
Q ss_conf 233145201234-433210677888--863187602331002333561
Q gi|254780263|r 95 ADGAILVCAAED-GPKPQTREHILL--ARQIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l--~~~lgi~~iIv~iNKmD~v~~ 139 (392)
T Consensus 68 ~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~P-lLIlaNKqDl~~a 114 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAA 114 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCC
T ss_conf 7589999956888899999999999970879986-9999863243369