>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

Probab=100.00 E-value=4e-43 Score=286.46 Aligned_cols=184 Identities=22% Similarity=0.369 Sum_probs=140.0 Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---H----HHCCCCCCCCHHHHHCCCEEEEEEEEEEC-----CCEEEEEEECCCC Q ss_conf 9999904689887899999987644---4----20013126868698629206378999821-----9908999847873 Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---E----KKEYGDIDSAPEEKLRGITIATAHVSYET-----DKRFYSHIDCPGH 81 (392) Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~iiD~PGH 81 (392) T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213) T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872 Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC------CCCHHHH---HHCCCCCCE Q ss_conf 0246779877400233145201234433210677888863187602331002333------5612221---101232100 Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA------VDDDELL---DISEYEIRD 152 (392) Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~------v~~~~~~---~~i~~~i~~ 152 (392) T Consensus 82 ~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~-~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213) T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213) T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 41799999888637767999987888757799999999986999-89999882343144069989999989999999999 Q ss_pred EEEEEE----EE---EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 111014----53---2210233114676411444565212332034431025222 Q gi|254780263|r 153 LLKEHK----YS---DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392) Q Consensus 153 ~l~~~~----~~---~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392) T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~--~fa~~y~l~d~i~~~ip~P 213 (213) T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE--SFAKKYGLVDSIVSNIPSP 213 (213) T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCC--CHHHHHHHHHHHHHHCCCC T ss_conf 9997078735165688796999970005212362--3211689999999638898

HHsearch alignment for GI: 254780263 and conserved domain: cd04167