HHsearch alignment for GI: 254780263 and conserved domain: cd04172

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.16  E-value=1.1e-05  Score=54.28  Aligned_cols=145  Identities=18%  Similarity=0.138  Sum_probs=78.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf             799999046898878999999876444200131268686986292063789-9982199--0899984787302467798
Q gi|254780263|r   13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMI   89 (392)
Q Consensus        13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi   89 (392)
T Consensus         6 ~KivlvGd~~VGKTsLi~r~~~~------------~F~~~--y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~   71 (182)
T cd04172           6 CKIVVVGDSQCGKTALLHVFAKD------------CFPEN--YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP   71 (182)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCCCCH
T ss_conf             89999999998999999999839------------99998--68735322689999999999999996898620122125


Q ss_pred             HHHHCCCCEEEEECCCCCCC-CCHHHHHH-HHHH--CCCCCEEEEECCCCCCCCHH-HHHH-------C-CCCCCEEEEE
Q ss_conf             77400233145201234433-21067788-8863--18760233100233356122-2110-------1-2321001110
Q gi|254780263|r   90 TGATQADGAILVCAAEDGPK-PQTREHIL-LARQ--IGISSIVVYMNKVDAVDDDE-LLDI-------S-EYEIRDLLKE  156 (392)
Q Consensus        90 ~g~~~~D~ailvVda~~G~~-~QT~eh~~-l~~~--lgi~~iIv~iNKmD~v~~~~-~~~~-------i-~~~i~~~l~~  156 (392)
T Consensus        72 ~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~-iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~  150 (182)
T cd04172          72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ  150 (182)
T ss_pred             HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             5512787899996489778899999999999998687998-899961710124414566776456778699999999997


Q ss_pred             EEEEEEEECCCCEEEEEEE
Q ss_conf             1453221023311467641
Q gi|254780263|r  157 HKYSDDTPIIRGSALCALQ  175 (392)
Q Consensus       157 ~~~~~~~pii~~sa~~g~~  175 (392)
T Consensus       151 ~g---~~~y~EtSAk~~~n  166 (182)
T cd04172         151 IG---AATYIECSALQSEN  166 (182)
T ss_pred             CC---CCEEEECCCCCCCC
T ss_conf             69---97999917078995