Query gi|254780263|ref|YP_003064676.1| translation elongation factor Tu [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 392
No_of_seqs 158 out of 6852
Neff 8.0
Searched_HMMs 39220
Date Tue May 24 11:39:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780263.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00049 elongation factor Tu; 100.0 0 0 749.7 30.7 391 1-392 1-397 (397)
2 PRK12735 elongation factor Tu; 100.0 0 0 748.0 30.2 391 1-392 1-396 (396)
3 TIGR00483 EF-1_alpha translati 100.0 0 0 755.8 14.1 374 7-391 2-441 (445)
4 PRK12736 elongation factor Tu; 100.0 0 0 736.9 28.3 388 1-392 1-394 (394)
5 CHL00071 tufA elongation facto 100.0 0 0 725.9 29.7 391 1-392 1-409 (409)
6 PRK12317 elongation factor 1-a 100.0 0 0 702.7 29.9 377 7-392 2-423 (426)
7 PTZ00336 elongation factor 1-a 100.0 0 0 695.2 30.3 377 7-392 2-431 (449)
8 PTZ00141 elongation factor 1 a 100.0 0 0 695.3 29.8 377 7-392 2-429 (443)
9 PRK05124 cysN sulfate adenylyl 100.0 0 0 685.2 27.7 373 8-392 23-439 (475)
10 COG5256 TEF1 Translation elong 100.0 0 0 681.4 26.7 376 8-392 3-428 (428)
11 KOG0460 consensus 100.0 0 0 684.4 19.0 389 3-392 45-438 (449)
12 COG0050 TufB GTPases - transla 100.0 0 0 673.5 23.8 389 1-392 1-394 (394)
13 PRK05506 bifunctional sulfate 100.0 0 0 625.0 28.3 369 8-389 3-415 (613)
14 PRK04000 translation initiatio 100.0 0 0 608.2 25.2 354 5-388 1-410 (410)
15 PRK10512 selenocysteinyl-tRNA- 100.0 0 0 601.8 24.7 335 14-390 2-340 (615)
16 TIGR02034 CysN sulfate adenyly 100.0 0 0 603.6 17.4 360 13-387 1-411 (411)
17 TIGR00485 EF-Tu translation el 100.0 0 0 574.5 15.3 389 1-392 1-394 (394)
18 KOG0458 consensus 100.0 0 0 555.9 20.8 376 8-392 173-603 (603)
19 PTZ00327 eukaryotic translatio 100.0 0 0 551.2 22.1 358 5-391 30-456 (460)
20 TIGR00475 selB selenocysteine- 100.0 0 0 544.8 19.1 351 13-390 1-357 (627)
21 COG2895 CysN GTPases - Sulfate 100.0 0 0 536.7 21.9 369 8-391 2-416 (431)
22 TIGR01394 TypA_BipA GTP-bindin 100.0 0 0 539.5 10.1 331 14-358 3-357 (609)
23 KOG0459 consensus 100.0 0 0 524.9 17.9 373 9-392 76-501 (501)
24 COG3276 SelB Selenocysteine-sp 100.0 0 0 464.4 19.3 335 14-389 2-338 (447)
25 COG5258 GTPBP1 GTPase [General 100.0 0 0 459.9 15.1 363 9-391 114-527 (527)
26 PRK10218 GTP-binding protein; 100.0 0 0 456.1 14.0 282 14-302 7-299 (607)
27 COG1217 TypA Predicted membran 100.0 0 0 437.3 11.2 316 13-342 6-332 (603)
28 COG5257 GCD11 Translation init 100.0 0 0 416.3 19.6 350 10-389 8-413 (415)
29 TIGR01393 lepA GTP-binding pro 100.0 0 0 412.0 12.0 265 14-297 5-282 (598)
30 cd01884 EF_Tu EF-Tu subfamily. 100.0 0 0 398.4 10.8 190 11-200 1-195 (195)
31 cd01883 EF1_alpha Eukaryotic e 100.0 0 0 388.7 13.2 186 14-200 1-218 (219)
32 cd04166 CysN_ATPS CysN_ATPS su 100.0 0 0 388.9 12.6 185 14-200 1-207 (208)
33 PRK05433 GTP-binding protein L 100.0 0 0 389.2 12.1 273 1-296 1-282 (601)
34 KOG0463 consensus 100.0 0 0 379.0 14.3 359 13-391 134-547 (641)
35 PRK13351 elongation factor G; 100.0 0 0 352.2 16.8 265 14-296 10-391 (687)
36 KOG0462 consensus 100.0 0 0 357.8 12.0 261 14-295 62-332 (650)
37 PRK00007 elongation factor G; 100.0 0 0 350.0 16.9 276 14-297 12-397 (693)
38 PRK00741 prfC peptide chain re 100.0 0 0 348.6 16.3 265 14-296 12-381 (526)
39 PRK12740 elongation factor G; 100.0 0 0 349.3 15.6 261 18-296 1-376 (670)
40 cd01891 TypA_BipA TypA (tyrosi 100.0 0 0 350.6 11.8 184 14-200 4-194 (194)
41 PRK12739 elongation factor G; 100.0 0 0 343.1 16.3 276 14-297 12-395 (693)
42 KOG1143 consensus 100.0 0 0 341.8 15.2 360 13-391 168-583 (591)
43 cd01888 eIF2_gamma eIF2-gamma 100.0 0 0 347.1 6.9 169 13-202 1-203 (203)
44 COG0480 FusA Translation elong 100.0 0 0 334.9 16.9 276 11-295 9-392 (697)
45 cd01889 SelB_euk SelB subfamil 100.0 0 0 342.0 10.5 172 13-201 1-189 (192)
46 PRK07560 elongation factor EF- 100.0 0 0 335.6 13.6 276 13-296 21-376 (730)
47 KOG0461 consensus 100.0 0 0 335.3 12.3 342 10-371 5-380 (522)
48 COG0481 LepA Membrane GTPase L 100.0 0 0 330.2 13.1 262 14-294 11-282 (603)
49 KOG0466 consensus 100.0 0 0 334.7 2.7 354 6-389 32-458 (466)
50 KOG0052 consensus 100.0 0 0 326.6 8.4 325 7-392 2-373 (391)
51 TIGR00484 EF-G translation elo 100.0 0 0 323.0 4.5 268 13-297 11-404 (705)
52 cd00881 GTP_translation_factor 100.0 0 0 313.9 11.4 175 14-200 1-189 (189)
53 PRK12312 infB translation init 100.0 2.8E-45 0 299.4 11.4 238 7-275 113-354 (610)
54 cd01890 LepA LepA subfamily. 100.0 2.8E-45 0 300.0 9.8 170 14-200 2-179 (179)
55 CHL00189 infB translation init 100.0 1.3E-44 0 295.8 12.5 250 8-292 269-527 (770)
56 COG4108 PrfC Peptide chain rel 100.0 2.1E-44 0 294.4 13.3 273 14-295 14-382 (528)
57 pfam00009 GTP_EFTU Elongation 100.0 2.7E-44 0 293.8 11.2 178 10-199 1-185 (185)
58 KOG0465 consensus 100.0 1.3E-44 0 295.9 6.4 264 12-295 39-421 (721)
59 PRK05306 infB translation init 100.0 3.9E-43 0 286.5 13.3 251 7-292 337-593 (839)
60 cd04167 Snu114p Snu114p subfam 100.0 4E-43 0 286.5 10.6 184 14-200 2-213 (213)
61 cd01885 EF2 EF2 (for archaea a 100.0 2.9E-42 0 281.1 12.0 184 14-200 2-222 (222)
62 PRK04004 translation initiatio 100.0 7.4E-42 0 278.6 11.1 223 11-258 5-281 (592)
63 cd04171 SelB SelB subfamily. 100.0 4.6E-42 0 279.9 9.5 161 14-195 2-163 (164)
64 TIGR00503 prfC peptide chain r 100.0 4.8E-42 0 279.8 9.2 301 14-326 13-416 (530)
65 cd04165 GTPBP1_like GTPBP1-lik 100.0 4.4E-42 0 280.0 7.5 144 14-159 1-172 (224)
66 cd04168 TetM_like Tet(M)-like 100.0 2.5E-40 5.6E-45 269.1 10.6 137 14-155 1-145 (237)
67 COG0532 InfB Translation initi 100.0 4.3E-39 1.1E-43 261.4 11.9 211 10-246 4-220 (509)
68 cd04170 EF-G_bact Elongation f 100.0 5.3E-39 1.3E-43 260.9 12.1 150 14-166 1-156 (268)
69 KOG1145 consensus 100.0 1.7E-38 4.5E-43 257.7 11.0 236 9-275 151-391 (683)
70 cd04169 RF3 RF3 subfamily. Pe 100.0 1.3E-37 3.3E-42 252.3 12.0 139 14-155 4-152 (267)
71 cd01886 EF-G Elongation factor 100.0 1.7E-37 4.2E-42 251.6 12.2 134 14-148 1-142 (270)
72 TIGR00490 aEF-2 translation el 100.0 1.7E-37 4.4E-42 251.5 9.9 276 14-295 21-374 (724)
73 KOG0469 consensus 100.0 4.9E-36 1.3E-40 242.5 9.4 282 9-293 16-472 (842)
74 KOG0464 consensus 100.0 1.7E-35 4.3E-40 239.2 3.3 266 14-294 39-418 (753)
75 KOG0467 consensus 100.0 1.1E-31 2.8E-36 215.5 13.7 125 11-136 7-136 (887)
76 cd01887 IF2_eIF5B IF2/eIF5B (i 100.0 3.5E-32 8.8E-37 218.6 9.1 157 14-195 2-163 (168)
77 KOG1144 consensus 100.0 8.2E-29 2.1E-33 197.7 8.5 231 15-268 478-773 (1064)
78 KOG0468 consensus 100.0 1.1E-27 2.7E-32 190.8 12.4 124 13-137 129-262 (971)
79 TIGR00491 aIF-2 translation in 99.9 2.6E-28 6.5E-33 194.6 6.8 224 10-258 549-828 (1145)
80 TIGR00487 IF-2 translation ini 99.9 2.1E-23 5.3E-28 164.2 10.2 235 8-273 87-327 (594)
81 cd01895 EngA2 EngA2 subfamily. 99.9 3E-22 7.8E-27 157.0 9.5 159 12-195 2-172 (174)
82 cd03693 EF1_alpha_II EF1_alpha 99.9 3.1E-23 7.8E-28 163.2 3.3 90 204-296 1-90 (91)
83 cd03697 EFTU_II EFTU_II: Elong 99.8 3.4E-22 8.6E-27 156.7 3.5 87 208-295 1-87 (87)
84 TIGR03594 GTPase_EngA ribosome 99.8 1.5E-20 3.8E-25 146.5 9.9 166 15-213 2-178 (429)
85 pfam03143 GTP_EFTU_D3 Elongati 99.8 7.1E-20 1.8E-24 142.3 12.6 96 296-391 1-97 (97)
86 PRK00093 engA GTP-binding prot 99.8 4E-20 1E-24 143.8 10.6 168 14-214 3-179 (438)
87 PRK09518 bifunctional cytidyla 99.8 3.8E-20 9.7E-25 144.0 9.3 168 14-214 281-459 (714)
88 PRK03003 engA GTP-binding prot 99.8 6.7E-20 1.7E-24 142.5 8.7 168 14-214 40-218 (474)
89 cd01876 YihA_EngB The YihA (En 99.8 9.5E-20 2.4E-24 141.5 9.0 155 15-196 2-169 (170)
90 cd04089 eRF3_II eRF3_II: domai 99.8 8.6E-21 2.2E-25 148.0 3.6 82 207-293 1-82 (82)
91 cd03696 selB_II selB_II: this 99.8 7.9E-21 2E-25 148.2 3.2 83 208-293 1-83 (83)
92 cd03698 eRF3_II_like eRF3_II_l 99.8 1.2E-20 3E-25 147.1 3.5 83 207-293 1-83 (83)
93 PRK00089 era GTP-binding prote 99.8 1.2E-19 3E-24 140.9 8.6 172 14-214 10-195 (296)
94 cd04163 Era Era subfamily. Er 99.8 3.9E-19 1E-23 137.7 9.1 156 13-196 4-167 (168)
95 cd03694 GTPBP_II Domain II of 99.8 3.7E-20 9.5E-25 144.0 3.3 86 208-293 1-87 (87)
96 cd00880 Era_like Era (E. coli 99.8 1.5E-19 3.8E-24 140.3 6.0 153 17-195 1-161 (163)
97 COG1160 Predicted GTPases [Gen 99.8 6.2E-19 1.6E-23 136.5 8.2 168 14-214 5-185 (444)
98 cd03706 mtEFTU_III Domain III 99.8 4.9E-18 1.3E-22 130.9 10.0 93 298-390 1-93 (93)
99 cd01894 EngA1 EngA1 subfamily. 99.8 3.6E-18 9.3E-23 131.7 9.3 148 16-196 1-156 (157)
100 PRK00093 engA GTP-binding prot 99.8 8E-18 2E-22 129.6 10.4 153 9-176 169-333 (438)
101 pfam10662 PduV-EutP Ethanolami 99.7 1.5E-18 3.8E-23 134.1 5.5 135 14-193 3-141 (143)
102 TIGR03598 GTPase_YsxC ribosome 99.7 5.5E-18 1.4E-22 130.6 7.9 147 11-174 17-176 (179)
103 PRK00454 engB GTPase EngB; Rev 99.7 7.7E-18 2E-22 129.7 8.2 159 12-197 24-195 (196)
104 TIGR03594 GTPase_EngA ribosome 99.7 2.2E-17 5.6E-22 126.8 9.6 154 8-176 168-332 (429)
105 PRK03003 engA GTP-binding prot 99.7 3.7E-17 9.3E-22 125.5 9.9 150 11-176 210-370 (474)
106 cd04093 HBS1_C HBS1_C: this fa 99.7 8.1E-17 2.1E-21 123.3 11.6 87 299-390 2-107 (107)
107 cd04164 trmE TrmE (MnmE, ThdF, 99.7 4.6E-17 1.2E-21 124.8 10.0 145 13-195 2-154 (157)
108 cd03707 EFTU_III Domain III of 99.7 3.3E-17 8.4E-22 125.7 9.2 90 298-387 1-90 (90)
109 COG1159 Era GTPase [General fu 99.7 5.8E-17 1.5E-21 124.3 8.6 174 13-214 7-194 (298)
110 pfam02421 FeoB_N Ferrous iron 99.7 1.5E-16 3.9E-21 121.6 9.0 153 14-199 1-161 (188)
111 PRK09518 bifunctional cytidyla 99.7 2E-16 5.2E-21 120.9 9.1 150 12-177 452-612 (714)
112 cd03704 eRF3c_III This family 99.7 4.2E-16 1.1E-20 118.9 10.3 87 299-390 2-108 (108)
113 cd03705 EF1_alpha_III Domain I 99.7 7.8E-16 2E-20 117.2 10.8 84 299-387 2-104 (104)
114 cd01513 Translation_factor_III 99.7 6.3E-16 1.6E-20 117.8 10.2 85 298-387 1-102 (102)
115 PRK04213 GTP-binding protein; 99.6 8E-16 2E-20 117.2 9.0 159 14-202 3-188 (195)
116 cd03695 CysN_NodQ_II CysN_NodQ 99.6 1E-16 2.5E-21 122.8 3.8 81 208-293 1-81 (81)
117 cd01878 HflX HflX subfamily. 99.6 1.6E-15 4.2E-20 115.3 9.5 154 8-195 36-202 (204)
118 cd01879 FeoB Ferrous iron tran 99.6 6.1E-16 1.6E-20 117.9 7.2 146 17-196 1-155 (158)
119 COG1160 Predicted GTPases [Gen 99.6 1E-15 2.6E-20 116.5 7.0 150 11-175 177-338 (444)
120 cd01898 Obg Obg subfamily. Th 99.6 2.7E-15 6.9E-20 113.9 7.9 152 14-195 2-168 (170)
121 cd03708 GTPBP_III Domain III o 99.6 3.4E-14 8.6E-19 107.1 11.8 86 298-390 1-87 (87)
122 cd01897 NOG NOG1 is a nucleola 99.6 1.4E-14 3.7E-19 109.4 9.4 150 14-195 2-165 (168)
123 cd04094 selB_III This family r 99.6 9.6E-14 2.5E-18 104.3 12.3 95 288-387 1-97 (97)
124 PRK09554 feoB ferrous iron tra 99.5 3.8E-14 9.8E-19 106.8 7.3 136 12-173 3-153 (772)
125 pfam00025 Arf ADP-ribosylation 99.5 1.1E-13 2.9E-18 103.8 9.3 145 9-174 11-161 (174)
126 cd01881 Obg_like The Obg-like 99.5 1.1E-13 2.7E-18 104.0 8.2 149 17-195 1-174 (176)
127 cd04155 Arl3 Arl3 subfamily. 99.5 3.1E-13 7.9E-18 101.1 8.0 143 10-173 12-160 (173)
128 COG2229 Predicted GTPase [Gene 99.4 8.2E-13 2.1E-17 98.5 10.0 150 13-172 11-162 (187)
129 cd04154 Arl2 Arl2 subfamily. 99.4 5.5E-13 1.4E-17 99.6 8.1 145 8-173 10-160 (173)
130 TIGR00450 thdF tRNA modificati 99.4 2.6E-12 6.6E-17 95.4 11.1 120 6-137 219-346 (473)
131 cd01896 DRG The developmentall 99.4 5E-12 1.3E-16 93.6 10.6 82 14-107 2-90 (233)
132 COG0486 ThdF Predicted GTPase 99.4 6.4E-12 1.6E-16 93.0 9.8 154 10-198 215-376 (454)
133 cd04160 Arfrp1 Arfrp1 subfamil 99.3 3.3E-12 8.3E-17 94.8 7.8 150 14-174 1-155 (167)
134 COG0370 FeoB Fe2+ transport sy 99.3 3.3E-12 8.5E-17 94.7 7.3 136 13-174 4-150 (653)
135 TIGR03156 GTP_HflX GTP-binding 99.3 1.1E-11 2.7E-16 91.6 9.0 148 13-195 190-349 (351)
136 PRK05291 trmE tRNA modificatio 99.3 2E-11 5.2E-16 89.9 9.7 145 10-197 214-366 (445)
137 pfam01926 MMR_HSR1 GTPase of u 99.3 9.3E-12 2.4E-16 92.0 7.8 98 24-133 1-106 (106)
138 cd00878 Arf_Arl Arf (ADP-ribos 99.3 8E-12 2E-16 92.4 7.1 139 15-174 2-146 (158)
139 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 1.9E-11 4.8E-16 90.1 8.6 144 9-173 12-161 (174)
140 COG0218 Predicted GTPase [Gene 99.3 2.9E-11 7.4E-16 88.9 9.6 118 13-144 25-155 (200)
141 TIGR00437 feoB ferrous iron tr 99.3 3.7E-12 9.4E-17 94.5 4.0 129 19-174 1-142 (733)
142 cd03691 BipA_TypA_II BipA_TypA 99.2 3.4E-12 8.8E-17 94.6 3.3 82 208-293 1-86 (86)
143 TIGR00231 small_GTP small GTP- 99.2 2.6E-11 6.7E-16 89.2 6.8 153 13-172 4-173 (186)
144 cd01882 BMS1 Bms1. Bms1 is an 99.2 6.9E-11 1.8E-15 86.6 8.5 144 10-172 37-180 (225)
145 cd04157 Arl6 Arl6 subfamily. 99.2 6.6E-11 1.7E-15 86.7 7.7 141 14-173 1-149 (162)
146 pfam00071 Ras Ras family. Incl 99.2 4.4E-11 1.1E-15 87.8 6.7 139 14-175 1-148 (162)
147 cd04159 Arl10_like Arl10-like 99.2 7.2E-11 1.8E-15 86.5 7.4 140 15-174 2-147 (159)
148 cd04149 Arf6 Arf6 subfamily. 99.2 6.3E-11 1.6E-15 86.8 7.1 144 10-174 7-156 (168)
149 cd00879 Sar1 Sar1 subfamily. 99.2 2.2E-10 5.6E-15 83.5 9.4 146 10-173 17-176 (190)
150 smart00177 ARF ARF-like small 99.1 2.7E-10 6.8E-15 82.9 8.9 143 10-174 11-160 (175)
151 PRK11058 putative GTPase HflX; 99.1 1.3E-10 3.4E-15 84.8 7.2 165 13-213 198-375 (426)
152 cd04150 Arf1_5_like Arf1-Arf5- 99.1 3.2E-10 8E-15 82.5 8.1 139 13-173 1-146 (159)
153 cd04151 Arl1 Arl1 subfamily. 99.1 2.7E-10 7E-15 82.9 7.6 139 15-174 2-146 (158)
154 PTZ00133 ADP-ribosylation fact 99.1 4.4E-10 1.1E-14 81.6 8.5 143 10-173 15-163 (182)
155 cd00882 Ras_like_GTPase Ras-li 99.1 1.4E-10 3.5E-15 84.7 5.9 139 17-174 1-146 (157)
156 COG2262 HflX GTPases [General 99.1 3.9E-10 1E-14 81.9 7.7 154 11-198 191-356 (411)
157 TIGR02528 EutP ethanolamine ut 99.1 2.4E-10 6E-15 83.3 6.0 136 14-194 2-143 (144)
158 PRK12299 obgE GTPase ObgE; Rev 99.1 4E-10 1E-14 81.8 7.1 150 14-197 160-326 (334)
159 cd04095 CysN_NoDQ_III TCysN_No 99.0 2.5E-09 6.3E-14 76.9 10.3 83 299-387 2-103 (103)
160 COG1084 Predicted GTPase [Gene 99.0 1.9E-09 4.9E-14 77.6 9.6 115 14-141 170-297 (346)
161 cd00154 Rab Rab family. Rab G 99.0 7E-10 1.8E-14 80.3 7.3 139 13-174 1-148 (159)
162 cd04156 ARLTS1 ARLTS1 subfamil 99.0 8.2E-10 2.1E-14 79.9 7.1 139 15-174 2-148 (160)
163 pfam09439 SRPRB Signal recogni 99.0 1.9E-09 4.8E-14 77.7 8.4 113 9-139 2-127 (181)
164 cd01863 Rab18 Rab18 subfamily. 99.0 1.4E-09 3.6E-14 78.5 7.0 142 13-175 1-149 (161)
165 PRK12298 obgE GTPase ObgE; Rev 99.0 2E-09 5E-14 77.6 7.6 138 14-174 161-319 (380)
166 cd04161 Arl2l1_Arl13_like Arl2 99.0 1.8E-09 4.7E-14 77.7 7.4 140 15-174 2-149 (167)
167 TIGR02729 Obg_CgtA GTP-binding 99.0 4.6E-09 1.2E-13 75.3 9.5 110 14-137 160-295 (296)
168 pfam03144 GTP_EFTU_D2 Elongati 99.0 4E-10 1E-14 81.8 3.7 70 222-292 1-70 (70)
169 smart00178 SAR Sar1p-like memb 99.0 3.4E-09 8.7E-14 76.1 8.3 146 10-173 15-170 (184)
170 PRK12296 obgE GTPase ObgE; Rev 99.0 2.5E-09 6.4E-14 76.9 7.4 136 13-173 160-325 (495)
171 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.0 2E-09 5.1E-14 77.5 6.8 144 12-174 3-156 (183)
172 cd01860 Rab5_related Rab5-rela 99.0 2.8E-09 7.1E-14 76.6 7.6 153 13-197 2-162 (163)
173 COG5192 BMS1 GTP-binding prote 99.0 9.3E-09 2.4E-13 73.4 10.2 113 10-140 67-179 (1077)
174 KOG1191 consensus 99.0 4.7E-09 1.2E-13 75.2 8.6 121 8-139 264-404 (531)
175 cd04158 ARD1 ARD1 subfamily. 99.0 2.4E-09 6E-14 77.1 7.1 139 15-174 2-147 (169)
176 KOG1423 consensus 98.9 3.5E-09 9E-14 76.0 7.8 117 9-140 69-201 (379)
177 cd04105 SR_beta Signal recogni 98.9 4.7E-09 1.2E-13 75.2 8.4 126 14-153 2-141 (203)
178 cd01342 Translation_Factor_II_ 98.9 4.7E-10 1.2E-14 81.4 3.1 83 208-293 1-83 (83)
179 cd04123 Rab21 Rab21 subfamily. 98.9 1.1E-09 2.9E-14 79.1 5.0 142 14-175 2-149 (162)
180 smart00175 RAB Rab subfamily o 98.9 2.6E-09 6.7E-14 76.8 6.7 142 13-174 1-148 (164)
181 PRK12297 obgE GTPase ObgE; Rev 98.9 7E-09 1.8E-13 74.1 8.1 135 14-173 160-314 (429)
182 cd01862 Rab7 Rab7 subfamily. 98.9 2.6E-09 6.6E-14 76.8 5.7 141 13-175 1-154 (172)
183 cd01893 Miro1 Miro1 subfamily. 98.9 5.4E-09 1.4E-13 74.8 7.3 157 13-195 1-161 (166)
184 cd04119 RJL RJL (RabJ-Like) su 98.9 4.1E-09 1E-13 75.6 6.5 144 13-175 1-154 (168)
185 cd04116 Rab9 Rab9 subfamily. 98.9 5.3E-09 1.4E-13 74.9 6.7 143 10-175 3-158 (170)
186 cd04127 Rab27A Rab27a subfamil 98.9 8E-09 2E-13 73.8 7.2 144 13-175 5-164 (180)
187 cd04115 Rab33B_Rab33A Rab33B/R 98.9 1.2E-08 3.1E-13 72.6 8.2 143 12-179 2-157 (170)
188 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.8 9.7E-09 2.5E-13 73.2 7.0 143 13-175 3-151 (166)
189 cd04145 M_R_Ras_like M-Ras/R-R 98.8 1.2E-08 3E-13 72.8 7.2 142 11-174 1-150 (164)
190 cd04128 Spg1 Spg1p. Spg1p (se 98.8 1.1E-08 2.8E-13 72.9 7.1 149 13-175 1-153 (182)
191 cd04139 RalA_RalB RalA/RalB su 98.8 6.6E-09 1.7E-13 74.3 5.9 137 14-175 2-149 (164)
192 cd01867 Rab8_Rab10_Rab13_like 98.8 9E-09 2.3E-13 73.4 6.6 143 13-175 4-152 (167)
193 cd00157 Rho Rho (Ras homology) 98.8 1E-08 2.6E-13 73.1 6.7 145 13-175 1-160 (171)
194 cd00876 Ras Ras family. The R 98.8 1.4E-08 3.5E-13 72.3 7.2 135 15-174 2-147 (160)
195 cd04125 RabA_like RabA-like su 98.8 8.7E-09 2.2E-13 73.6 6.1 145 13-176 1-150 (188)
196 cd04124 RabL2 RabL2 subfamily. 98.8 1.4E-08 3.6E-13 72.3 7.2 140 13-175 1-145 (161)
197 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 1.3E-08 3.2E-13 72.5 6.9 145 14-175 2-152 (170)
198 cd04113 Rab4 Rab4 subfamily. 98.8 1.1E-08 2.7E-13 73.0 6.4 142 14-175 2-149 (161)
199 cd04121 Rab40 Rab40 subfamily. 98.8 1E-08 2.6E-13 73.1 6.2 139 12-175 6-154 (189)
200 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 2.1E-08 5.3E-13 71.2 7.5 110 15-139 2-114 (164)
201 cd01868 Rab11_like Rab11-like. 98.8 1.8E-08 4.7E-13 71.5 7.1 141 13-175 4-152 (165)
202 cd03689 RF3_II RF3_II: this su 98.8 2.1E-09 5.3E-14 77.4 2.0 73 217-293 11-84 (85)
203 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 1.1E-08 2.9E-13 72.9 5.7 142 13-175 1-155 (201)
204 cd04104 p47_IIGP_like p47 (47- 98.8 5.9E-09 1.5E-13 74.6 4.3 165 13-202 2-188 (197)
205 cd04122 Rab14 Rab14 subfamily. 98.8 1.7E-08 4.3E-13 71.7 6.1 143 13-175 3-151 (166)
206 cd04176 Rap2 Rap2 subgroup. T 98.8 2.9E-08 7.4E-13 70.3 7.1 138 13-175 2-150 (163)
207 cd04088 EFG_mtEFG_II EFG_mtEFG 98.8 4.4E-09 1.1E-13 75.4 2.8 78 209-293 2-83 (83)
208 smart00173 RAS Ras subfamily o 98.7 2.7E-08 6.9E-13 70.5 6.7 137 14-175 2-149 (164)
209 cd04106 Rab23_lke Rab23-like s 98.7 2.7E-08 7E-13 70.5 6.7 143 13-175 1-150 (162)
210 cd04112 Rab26 Rab26 subfamily. 98.7 2.1E-08 5.4E-13 71.1 6.1 153 14-196 2-161 (191)
211 cd01861 Rab6 Rab6 subfamily. 98.7 3E-08 7.8E-13 70.2 6.9 145 14-175 2-149 (161)
212 cd01866 Rab2 Rab2 subfamily. 98.7 2.1E-08 5.3E-13 71.2 5.9 141 13-175 5-153 (168)
213 cd04117 Rab15 Rab15 subfamily. 98.7 2.1E-08 5.4E-13 71.1 5.7 140 13-175 1-149 (161)
214 COG1100 GTPase SAR1 and relate 98.7 8E-08 2E-12 67.6 8.5 116 13-141 6-128 (219)
215 cd04110 Rab35 Rab35 subfamily. 98.7 4.6E-08 1.2E-12 69.1 7.2 143 13-174 7-153 (199)
216 cd00877 Ran Ran (Ras-related n 98.7 5.7E-08 1.5E-12 68.5 7.4 138 14-175 2-146 (166)
217 cd04138 H_N_K_Ras_like H-Ras/N 98.7 3.9E-08 9.9E-13 69.5 6.4 136 13-174 2-148 (162)
218 cd04101 RabL4 RabL4 (Rab-like4 98.7 7.8E-08 2E-12 67.6 7.9 142 13-174 1-150 (164)
219 COG3596 Predicted GTPase [Gene 98.7 7.9E-08 2E-12 67.6 7.8 170 8-199 35-223 (296)
220 cd04114 Rab30 Rab30 subfamily. 98.7 3.4E-08 8.6E-13 69.9 5.7 141 13-175 8-156 (169)
221 PTZ00132 GTP-binding nuclear p 98.7 5.8E-08 1.5E-12 68.5 6.8 138 11-176 5-153 (209)
222 cd04177 RSR1 RSR1 subgroup. R 98.7 2.6E-08 6.6E-13 70.6 5.0 139 13-175 2-151 (168)
223 cd01874 Cdc42 Cdc42 subfamily. 98.7 1E-07 2.6E-12 67.0 7.8 143 12-175 1-162 (175)
224 cd01871 Rac1_like Rac1-like su 98.7 9.2E-08 2.3E-12 67.2 7.4 142 13-175 2-162 (174)
225 cd01864 Rab19 Rab19 subfamily. 98.7 6E-08 1.5E-12 68.3 6.3 141 13-175 4-153 (165)
226 cd04120 Rab12 Rab12 subfamily. 98.7 3.8E-08 9.7E-13 69.6 5.3 141 13-175 1-150 (202)
227 pfam00350 Dynamin_N Dynamin fa 98.7 1.2E-07 3.1E-12 66.4 7.8 62 69-134 99-168 (168)
228 cd01892 Miro2 Miro2 subfamily. 98.7 1.4E-07 3.5E-12 66.1 8.1 143 10-174 2-152 (169)
229 cd04147 Ras_dva Ras-dva subfam 98.7 6.5E-08 1.7E-12 68.1 6.4 152 15-196 2-161 (198)
230 cd04092 mtEFG2_II_like mtEFG2_ 98.7 2.1E-08 5.4E-13 71.1 3.8 80 210-293 3-83 (83)
231 cd04132 Rho4_like Rho4-like su 98.6 9.8E-08 2.5E-12 67.0 7.1 144 14-175 2-154 (187)
232 cd04118 Rab24 Rab24 subfamily. 98.6 1.1E-07 2.8E-12 66.7 7.3 142 13-175 1-153 (193)
233 cd04140 ARHI_like ARHI subfami 98.6 8.6E-08 2.2E-12 67.4 6.5 151 13-195 2-162 (165)
234 KOG1489 consensus 98.6 1.4E-07 3.6E-12 66.0 7.6 136 13-173 197-352 (366)
235 cd03699 lepA_II lepA_II: This 98.6 2.7E-08 6.8E-13 70.5 3.8 84 208-292 1-85 (86)
236 cd01875 RhoG RhoG subfamily. 98.6 1.8E-07 4.6E-12 65.4 7.8 154 12-196 3-175 (191)
237 cd01865 Rab3 Rab3 subfamily. 98.6 6.4E-08 1.6E-12 68.2 5.5 144 13-175 2-150 (165)
238 cd04142 RRP22 RRP22 subfamily. 98.6 1.2E-07 3E-12 66.5 6.7 142 13-175 1-161 (198)
239 cd04137 RheB Rheb (Ras Homolog 98.6 7.7E-08 2E-12 67.7 5.7 140 14-175 3-150 (180)
240 PRK13768 GTPase; Provisional 98.6 2E-07 5.1E-12 65.1 7.8 114 14-141 4-179 (253)
241 cd04126 Rab20 Rab20 subfamily. 98.6 1.4E-07 3.5E-12 66.1 6.9 108 13-139 1-115 (220)
242 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 7.9E-08 2E-12 67.6 5.5 152 13-196 3-162 (172)
243 cd01870 RhoA_like RhoA-like su 98.6 1.8E-07 4.5E-12 65.5 7.1 140 14-174 3-161 (175)
244 smart00174 RHO Rho (Ras homolo 98.6 1.1E-07 2.9E-12 66.6 6.1 152 15-195 1-169 (174)
245 cd04175 Rap1 Rap1 subgroup. T 98.6 1.6E-07 4E-12 65.7 6.6 141 13-175 2-150 (164)
246 cd04130 Wrch_1 Wrch-1 subfamil 98.6 1.7E-07 4.3E-12 65.6 6.5 145 13-175 1-161 (173)
247 cd04133 Rop_like Rop subfamily 98.6 2.4E-07 6.1E-12 64.6 7.1 155 13-195 2-170 (176)
248 cd04144 Ras2 Ras2 subfamily. 98.6 2.3E-07 5.9E-12 64.7 6.8 136 15-175 2-150 (190)
249 cd04136 Rap_like Rap-like subf 98.5 3.2E-07 8.3E-12 63.8 6.9 138 13-175 2-150 (163)
250 pfam03029 ATP_bind_1 Conserved 98.5 3.5E-07 8.8E-12 63.6 7.0 109 17-140 1-170 (234)
251 cd04091 mtEFG1_II_like mtEFG1_ 98.5 6.5E-08 1.6E-12 68.1 3.2 76 212-293 5-81 (81)
252 pfam05049 IIGP Interferon-indu 98.5 1.2E-07 3.1E-12 66.4 4.3 169 7-202 30-222 (375)
253 cd03688 eIF2_gamma_II eIF2_gam 98.5 8.4E-08 2.1E-12 67.4 3.0 91 204-294 2-112 (113)
254 cd04135 Tc10 TC10 subfamily. 98.5 4.2E-07 1.1E-11 63.1 6.2 144 13-174 1-160 (174)
255 cd04134 Rho3 Rho3 subfamily. 98.5 7.3E-07 1.9E-11 61.6 7.4 147 14-175 2-161 (189)
256 cd04146 RERG_RasL11_like RERG/ 98.5 3.8E-07 9.6E-12 63.4 5.9 149 15-194 2-160 (165)
257 cd04111 Rab39 Rab39 subfamily. 98.4 3.6E-07 9.1E-12 63.5 5.6 140 13-176 3-154 (211)
258 pfam08477 Miro Miro-like prote 98.4 2.8E-06 7.1E-11 58.0 9.4 111 15-135 2-118 (118)
259 pfam03308 ArgK ArgK protein. T 98.4 5.6E-07 1.4E-11 62.3 5.7 171 7-192 24-231 (267)
260 cd04109 Rab28 Rab28 subfamily. 98.4 1.3E-06 3.2E-11 60.1 7.5 136 14-174 2-152 (215)
261 pfam04670 Gtr1_RagA Gtr1/RagA 98.4 1.4E-06 3.7E-11 59.8 7.6 133 15-159 2-149 (230)
262 COG0536 Obg Predicted GTPase [ 98.4 2.1E-06 5.3E-11 58.8 7.8 140 13-173 160-318 (369)
263 cd03690 Tet_II Tet_II: This su 98.4 2.7E-07 6.8E-12 64.3 3.1 81 205-293 1-85 (85)
264 cd04148 RGK RGK subfamily. Th 98.4 1.3E-06 3.3E-11 60.1 6.6 152 14-197 2-162 (221)
265 KOG0073 consensus 98.3 3.7E-06 9.4E-11 57.3 8.7 144 5-173 10-163 (185)
266 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.3 3.3E-06 8.5E-11 57.5 7.6 141 13-174 14-173 (232)
267 cd04131 Rnd Rnd subfamily. Th 98.3 4.2E-06 1.1E-10 56.9 8.0 142 13-175 2-162 (178)
268 cd04129 Rho2 Rho2 subfamily. 98.3 1.3E-06 3.3E-11 60.1 5.4 152 14-196 3-171 (187)
269 COG1163 DRG Predicted GTPase [ 98.3 1.5E-06 3.8E-11 59.7 5.7 85 13-109 64-155 (365)
270 cd03700 eEF2_snRNP_like_II EF2 98.2 1E-06 2.6E-11 60.8 3.9 69 220-292 14-92 (93)
271 cd04102 RabL3 RabL3 (Rab-like3 98.2 1.4E-05 3.6E-10 53.6 9.7 113 13-140 1-145 (202)
272 cd04143 Rhes_like Rhes_like su 98.2 2.7E-06 6.9E-11 58.1 6.0 155 14-199 2-172 (247)
273 smart00176 RAN Ran (Ras-relate 98.2 2.2E-06 5.5E-11 58.7 5.2 131 18-176 1-142 (200)
274 KOG0092 consensus 98.2 8.1E-06 2.1E-10 55.2 7.3 158 11-201 4-170 (200)
275 pfam04548 AIG1 AIG1 family. Ar 98.2 2.1E-05 5.3E-10 52.6 9.3 117 13-140 1-132 (200)
276 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.2 1.1E-05 2.8E-10 54.3 7.7 145 13-175 6-166 (182)
277 TIGR01425 SRP54_euk signal rec 98.1 1.2E-05 3.2E-10 54.0 7.5 126 5-136 115-272 (453)
278 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.1 1.5E-05 3.9E-10 53.4 7.8 143 13-176 2-163 (222)
279 pfam00448 SRP54 SRP54-type pro 98.1 4.4E-05 1.1E-09 50.6 9.9 123 11-137 1-153 (196)
280 PRK05306 infB translation init 98.1 2.2E-05 5.6E-10 52.4 8.3 82 209-292 748-829 (839)
281 KOG2486 consensus 98.1 5.4E-05 1.4E-09 50.0 10.2 149 13-175 137-303 (320)
282 cd01849 YlqF_related_GTPase Yl 98.1 5.1E-06 1.3E-10 56.4 4.9 46 96-141 1-46 (155)
283 pfam00735 Septin Septin. Membe 98.1 3.1E-05 8E-10 51.5 8.7 140 12-157 4-173 (280)
284 cd04103 Centaurin_gamma Centau 98.1 7.7E-06 2E-10 55.3 5.5 140 13-175 1-146 (158)
285 COG4917 EutP Ethanolamine util 98.1 5.6E-06 1.4E-10 56.1 4.8 137 14-195 3-143 (148)
286 cd03115 SRP The signal recogni 98.1 3.6E-05 9.1E-10 51.1 8.8 120 15-138 3-153 (173)
287 cd01859 MJ1464 MJ1464. This f 98.0 6.6E-06 1.7E-10 55.7 4.8 92 87-198 5-96 (156)
288 PRK09435 arginine/ornithine tr 98.0 1.7E-05 4.4E-10 53.1 6.8 170 11-192 48-254 (325)
289 cd01850 CDC_Septin CDC/Septin. 98.0 4.8E-05 1.2E-09 50.4 9.0 140 12-157 4-175 (276)
290 cd01858 NGP_1 NGP-1. Autoanti 98.0 1.2E-05 3E-10 54.1 5.7 51 90-140 4-55 (157)
291 COG1703 ArgK Putative periplas 98.0 1.6E-05 4E-10 53.3 6.1 167 10-197 50-253 (323)
292 KOG0780 consensus 98.0 3.2E-05 8.1E-10 51.5 7.7 123 5-136 95-252 (483)
293 cd01852 AIG1 AIG1 (avrRpt2-ind 98.0 2E-05 5.1E-10 52.7 6.5 164 13-198 1-184 (196)
294 COG0541 Ffh Signal recognition 98.0 7.1E-05 1.8E-09 49.3 9.2 122 9-137 97-252 (451)
295 COG0378 HypB Ni2+-binding GTPa 98.0 9.4E-06 2.4E-10 54.7 4.4 154 4-173 5-186 (202)
296 PRK12312 infB translation init 98.0 6.5E-06 1.6E-10 55.8 3.4 91 200-292 511-601 (610)
297 KOG0090 consensus 98.0 8.5E-06 2.2E-10 55.0 4.0 127 14-155 40-179 (238)
298 cd01856 YlqF YlqF. Proteins o 97.9 1.8E-05 4.6E-10 53.0 4.8 83 79-173 3-86 (171)
299 CHL00189 infB translation init 97.9 7.1E-05 1.8E-09 49.3 7.8 81 209-292 679-759 (770)
300 COG5019 CDC3 Septin family pro 97.9 8.4E-05 2.1E-09 48.8 8.1 140 11-156 22-193 (373)
301 PRK00771 signal recognition pa 97.9 0.00011 2.7E-09 48.2 8.3 125 7-137 93-247 (433)
302 PRK06731 flhF flagellar biosyn 97.9 8.1E-05 2.1E-09 49.0 7.5 124 9-138 73-225 (270)
303 pfam05783 DLIC Dynein light in 97.8 1.9E-05 4.8E-10 52.9 4.0 141 13-170 46-265 (490)
304 KOG0076 consensus 97.8 4.5E-05 1.1E-09 50.5 5.4 169 7-196 12-189 (197)
305 smart00053 DYNc Dynamin, GTPas 97.8 0.00016 4.2E-09 47.0 8.0 124 14-140 28-208 (240)
306 cd04090 eEF2_II_snRNP Loc2 eEF 97.8 3.5E-05 9E-10 51.2 4.5 68 222-292 16-93 (94)
307 PRK10867 signal recognition pa 97.8 0.00028 7E-09 45.6 8.9 121 10-136 99-252 (453)
308 KOG1547 consensus 97.7 0.00028 7.1E-09 45.6 8.8 140 11-158 45-217 (336)
309 KOG0394 consensus 97.7 0.0002 5E-09 46.6 7.9 150 8-176 5-166 (210)
310 cd03692 mtIF2_IVc mtIF2_IVc: t 97.7 2.4E-05 6.2E-10 52.2 3.2 81 210-292 3-83 (84)
311 cd01856 YlqF YlqF. Proteins o 97.7 5.6E-05 1.4E-09 49.9 4.9 57 10-80 113-169 (171)
312 KOG0077 consensus 97.7 0.0002 5.2E-09 46.5 7.6 113 11-139 19-136 (193)
313 cd03114 ArgK-like The function 97.7 0.00014 3.7E-09 47.4 6.7 112 15-135 2-148 (148)
314 PRK10416 cell division protein 97.7 0.00059 1.5E-08 43.6 9.7 30 10-40 294-323 (499)
315 KOG0448 consensus 97.7 0.00021 5.4E-09 46.3 7.4 140 10-152 107-290 (749)
316 KOG0078 consensus 97.6 0.00017 4.3E-09 46.9 6.4 143 11-177 11-163 (207)
317 cd04178 Nucleostemin_like Nucl 97.6 0.00013 3.4E-09 47.6 5.7 46 96-141 1-47 (172)
318 PRK12723 flagellar biosynthesi 97.6 0.0006 1.5E-08 43.6 8.9 121 15-138 177-326 (388)
319 cd01857 HSR1_MMR1 HSR1/MMR1. 97.6 0.00012 3.2E-09 47.8 4.9 56 86-141 3-59 (141)
320 TIGR00750 lao LAO/AO transport 97.6 0.00032 8E-09 45.3 6.9 162 13-197 39-267 (333)
321 PRK06995 flhF flagellar biosyn 97.6 0.00098 2.5E-08 42.2 9.4 122 14-138 178-325 (404)
322 PRK05703 flhF flagellar biosyn 97.5 0.0011 2.9E-08 41.9 9.3 121 14-138 212-359 (412)
323 KOG1532 consensus 97.5 0.00063 1.6E-08 43.4 7.9 126 13-139 20-196 (366)
324 PTZ00099 rab6; Provisional 97.5 0.00013 3.4E-09 47.6 4.3 119 57-197 11-141 (176)
325 COG0532 InfB Translation initi 97.5 6.9E-05 1.8E-09 49.4 2.8 82 210-293 416-497 (509)
326 KOG0098 consensus 97.5 0.00046 1.2E-08 44.3 6.9 143 12-173 6-153 (216)
327 pfam00503 G-alpha G-protein al 97.5 0.0019 4.8E-08 40.5 9.9 26 7-32 23-48 (350)
328 smart00275 G_alpha G protein a 97.5 0.0025 6.3E-08 39.7 10.4 27 6-32 15-41 (342)
329 TIGR00959 ffh signal recogniti 97.5 0.00014 3.7E-09 47.4 4.1 120 10-136 100-259 (439)
330 KOG0070 consensus 97.4 0.00012 3.1E-09 47.8 3.6 144 10-173 15-163 (181)
331 PRK09563 rbgA ribosomal biogen 97.4 0.00031 7.8E-09 45.4 5.5 60 79-141 8-68 (282)
332 KOG1486 consensus 97.4 0.00023 5.8E-09 46.1 4.7 85 12-109 62-154 (364)
333 cd01855 YqeH YqeH. YqeH is an 97.4 0.00024 6E-09 46.1 4.5 101 82-196 21-123 (190)
334 TIGR03596 GTPase_YlqF ribosome 97.4 0.00016 4E-09 47.2 3.6 83 79-173 5-88 (276)
335 pfam02492 cobW CobW/HypB/UreG, 97.4 0.00068 1.7E-08 43.2 6.7 142 15-167 3-174 (174)
336 TIGR03596 GTPase_YlqF ribosome 97.4 0.00032 8.2E-09 45.2 5.0 58 10-81 116-173 (276)
337 PRK10463 hydrogenase nickel in 97.3 0.00011 2.8E-09 48.1 2.3 148 10-173 102-274 (290)
338 pfam09173 eIF2_C Initiation fa 97.3 0.0015 3.8E-08 41.1 8.0 61 318-387 24-88 (88)
339 PRK09563 rbgA ribosomal biogen 97.3 0.00024 6.1E-09 46.0 3.9 58 10-81 119-176 (282)
340 cd03110 Fer4_NifH_child This p 97.3 0.0024 6.1E-08 39.8 9.0 69 67-138 89-157 (179)
341 COG3640 CooC CO dehydrogenase 97.3 0.001 2.6E-08 42.1 7.0 65 70-137 133-198 (255)
342 TIGR00064 ftsY signal recognit 97.3 0.0016 4E-08 40.9 7.9 150 7-162 78-267 (284)
343 KOG1954 consensus 97.3 0.00087 2.2E-08 42.5 6.4 130 10-142 58-229 (532)
344 KOG0094 consensus 97.3 0.0033 8.4E-08 39.0 9.3 157 13-201 23-188 (221)
345 cd01859 MJ1464 MJ1464. This f 97.3 0.00054 1.4E-08 43.8 5.2 56 11-80 100-155 (156)
346 TIGR00436 era GTP-binding prot 97.3 0.00096 2.4E-08 42.3 6.4 144 14-174 2-156 (278)
347 PRK12726 flagellar biosynthesi 97.2 0.0017 4.2E-08 40.8 7.4 120 15-137 209-355 (407)
348 cd01854 YjeQ_engC YjeQ/EngC. 97.2 0.0011 2.7E-08 42.0 6.0 72 92-173 76-149 (287)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 97.2 0.00067 1.7E-08 43.3 4.9 57 10-80 81-137 (141)
350 KOG0084 consensus 97.2 0.0021 5.5E-08 40.1 7.4 143 12-174 9-158 (205)
351 KOG1707 consensus 97.1 0.0036 9.2E-08 38.7 8.1 118 9-139 6-130 (625)
352 TIGR00073 hypB hydrogenase acc 97.1 0.00052 1.3E-08 43.9 3.6 155 11-195 33-220 (225)
353 pfam03193 DUF258 Protein of un 97.1 0.0018 4.7E-08 40.5 6.3 65 14-85 37-101 (161)
354 PRK00098 ribosome-associated G 97.1 0.00031 7.9E-09 45.3 2.3 73 92-173 78-152 (298)
355 KOG3886 consensus 97.0 0.00083 2.1E-08 42.7 4.1 118 14-142 6-134 (295)
356 TIGR03348 VI_IcmF type VI secr 97.0 0.0044 1.1E-07 38.2 7.7 121 14-145 113-265 (1169)
357 COG1161 Predicted GTPases [Gen 97.0 0.002 5E-08 40.4 5.7 65 74-141 13-78 (322)
358 PRK01889 ribosome-associated G 97.0 0.002 5.2E-08 40.3 5.8 71 92-173 109-181 (353)
359 cd00066 G-alpha G protein alph 97.0 0.012 3.1E-07 35.4 9.6 85 53-137 143-241 (317)
360 cd01873 RhoBTB RhoBTB subfamil 97.0 0.0018 4.5E-08 40.6 5.3 115 11-137 1-133 (195)
361 cd02036 MinD Bacterial cell di 97.0 0.0049 1.2E-07 37.9 7.5 120 15-136 2-126 (179)
362 KOG0410 consensus 96.9 0.0041 1E-07 38.4 7.0 145 14-198 180-341 (410)
363 KOG1534 consensus 96.9 0.0012 3E-08 41.7 4.2 124 14-139 5-179 (273)
364 KOG2655 consensus 96.9 0.0029 7.3E-08 39.3 5.9 139 12-156 21-189 (366)
365 KOG0075 consensus 96.9 0.0017 4.3E-08 40.8 4.6 113 10-139 18-137 (186)
366 PRK12288 ribosome-associated G 96.8 0.00062 1.6E-08 43.5 2.0 73 92-173 120-195 (344)
367 COG0552 FtsY Signal recognitio 96.8 0.013 3.4E-07 35.2 8.5 120 10-136 138-296 (340)
368 pfam07015 VirC1 VirC1 protein. 96.8 0.0064 1.6E-07 37.2 6.8 114 20-136 10-152 (231)
369 COG1419 FlhF Flagellar GTP-bin 96.7 0.012 3.1E-07 35.4 8.1 124 12-139 203-353 (407)
370 cd01849 YlqF_related_GTPase Yl 96.7 0.0018 4.6E-08 40.6 3.8 57 10-80 98-154 (155)
371 PRK13849 putative crown gall t 96.7 0.0069 1.8E-07 37.0 6.7 119 15-136 4-152 (231)
372 COG1149 MinD superfamily P-loo 96.7 0.0028 7.2E-08 39.4 4.7 81 71-155 164-244 (284)
373 KOG0095 consensus 96.7 0.013 3.4E-07 35.2 8.1 125 10-149 5-137 (213)
374 COG0523 Putative GTPases (G3E 96.7 0.0033 8.5E-08 38.9 4.9 146 16-169 5-183 (323)
375 cd01858 NGP_1 NGP-1. Autoanti 96.7 0.0027 6.8E-08 39.5 4.4 59 8-80 98-156 (157)
376 TIGR03597 GTPase_YqeH ribosome 96.7 0.0032 8.2E-08 39.0 4.8 111 60-176 29-141 (360)
377 COG1162 Predicted GTPases [Gen 96.7 0.0012 3.1E-08 41.7 2.5 62 94-159 79-142 (301)
378 PRK11889 flhF flagellar biosyn 96.6 0.022 5.6E-07 33.9 8.9 20 14-33 243-262 (436)
379 PRK04004 translation initiatio 96.6 0.0017 4.4E-08 40.7 3.1 76 214-293 474-550 (592)
380 PRK01889 ribosome-associated G 96.6 0.0016 4.2E-08 40.8 2.8 16 232-247 189-204 (353)
381 PRK12727 flagellar biosynthesi 96.5 0.016 4E-07 34.8 7.6 60 218-278 356-422 (557)
382 PRK12289 ribosome-associated G 96.5 0.00094 2.4E-08 42.3 1.3 72 92-173 86-159 (351)
383 PRK09601 translation-associate 96.4 0.012 3.2E-07 35.4 6.4 82 13-106 3-108 (364)
384 TIGR03597 GTPase_YqeH ribosome 96.4 0.0015 3.9E-08 41.0 1.8 19 15-33 157-175 (360)
385 KOG3905 consensus 96.3 0.0052 1.3E-07 37.7 4.2 141 13-170 53-272 (473)
386 cd02042 ParA ParA and ParB of 96.3 0.0072 1.8E-07 36.9 4.9 65 21-106 9-73 (104)
387 KOG2485 consensus 96.3 0.015 3.8E-07 34.9 6.4 71 67-140 18-89 (335)
388 KOG0082 consensus 96.2 0.089 2.3E-06 30.1 10.1 84 54-137 178-275 (354)
389 PRK12288 ribosome-associated G 96.2 0.011 2.9E-07 35.6 5.4 33 70-102 51-85 (344)
390 KOG4252 consensus 96.2 0.0022 5.5E-08 40.1 1.7 133 1-148 12-149 (246)
391 PRK10751 molybdopterin-guanine 96.2 0.0098 2.5E-07 36.0 5.0 58 14-93 4-61 (170)
392 pfam01656 CbiA CobQ/CobB/MinD/ 96.2 0.01 2.5E-07 36.0 5.0 71 69-141 111-181 (212)
393 PHA02518 ParA-like protein; Pr 96.2 0.014 3.6E-07 35.0 5.7 120 15-136 3-145 (211)
394 PRK13796 GTP-binding protein Y 96.2 0.013 3.2E-07 35.4 5.4 110 60-175 37-148 (367)
395 PRK12724 flagellar biosynthesi 96.2 0.077 2E-06 30.5 9.5 118 15-138 226-373 (432)
396 KOG0395 consensus 96.2 0.0091 2.3E-07 36.2 4.7 138 13-172 4-149 (196)
397 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.025 6.3E-07 33.6 6.8 74 15-112 2-76 (99)
398 PRK00143 trmU tRNA (5-methylam 96.1 0.045 1.2E-06 31.9 7.9 118 261-391 230-355 (355)
399 PRK13796 GTP-binding protein Y 96.1 0.0034 8.7E-08 38.9 2.1 30 71-103 77-106 (367)
400 KOG0074 consensus 96.0 0.026 6.6E-07 33.4 6.5 109 10-139 15-134 (185)
401 PRK11537 putative GTP-binding 96.0 0.02 5.2E-07 34.0 5.8 125 15-141 7-167 (317)
402 KOG0086 consensus 95.9 0.066 1.7E-06 30.9 8.1 111 13-139 10-129 (214)
403 cd03116 MobB Molybdenum is an 95.9 0.061 1.5E-06 31.1 7.7 50 14-84 3-52 (159)
404 cd03702 IF2_mtIF2_II This fami 95.6 0.011 2.9E-07 35.6 3.1 74 211-293 4-79 (95)
405 KOG0087 consensus 95.6 0.033 8.5E-07 32.7 5.5 139 13-175 15-163 (222)
406 KOG1490 consensus 95.5 0.0062 1.6E-07 37.3 1.5 117 13-141 169-298 (620)
407 KOG3887 consensus 95.5 0.0078 2E-07 36.6 1.9 119 8-141 25-152 (347)
408 TIGR00176 mobB molybdopterin-g 95.4 0.073 1.9E-06 30.6 6.9 24 15-38 2-25 (165)
409 cd03701 IF2_IF5B_II IF2_IF5B_I 95.3 0.019 4.8E-07 34.3 3.4 60 211-275 4-64 (95)
410 KOG1144 consensus 95.3 0.0098 2.5E-07 36.0 2.0 60 215-278 945-1006(1064)
411 KOG2484 consensus 95.2 0.032 8.1E-07 32.9 4.5 70 71-140 122-193 (435)
412 cd02038 FleN-like FleN is a me 95.2 0.059 1.5E-06 31.2 5.8 124 15-154 2-128 (139)
413 cd03112 CobW_like The function 95.2 0.056 1.4E-06 31.4 5.7 21 15-35 3-23 (158)
414 cd01853 Toc34_like Toc34-like 95.2 0.058 1.5E-06 31.2 5.8 61 10-81 29-89 (249)
415 KOG0071 consensus 95.2 0.23 6E-06 27.5 8.7 140 12-173 17-163 (180)
416 TIGR03371 cellulose_yhjQ cellu 95.1 0.21 5.3E-06 27.8 8.4 68 69-138 113-182 (246)
417 TIGR03574 selen_PSTK L-seryl-t 95.1 0.1 2.7E-06 29.7 6.8 98 15-131 2-102 (249)
418 KOG2423 consensus 95.0 0.0079 2E-07 36.6 0.8 46 93-138 212-258 (572)
419 KOG0080 consensus 95.0 0.14 3.7E-06 28.8 7.2 139 11-172 10-158 (209)
420 PRK05480 uridine kinase; Provi 94.9 0.034 8.6E-07 32.7 3.7 30 8-38 3-32 (209)
421 COG1341 Predicted GTPase or GT 94.7 0.033 8.5E-07 32.7 3.4 35 13-47 74-108 (398)
422 TIGR02788 VirB11 P-type DNA tr 94.7 0.057 1.4E-06 31.3 4.6 76 14-129 160-240 (328)
423 TIGR01007 eps_fam capsular exo 94.7 0.067 1.7E-06 30.9 5.0 120 15-138 22-197 (207)
424 cd04178 Nucleostemin_like Nucl 94.7 0.036 9.3E-07 32.5 3.6 57 10-80 115-171 (172)
425 PRK09602 translation-associate 94.7 0.13 3.2E-06 29.1 6.3 91 13-105 3-114 (396)
426 PRK13900 type IV secretion sys 94.7 0.034 8.7E-07 32.7 3.4 16 187-202 174-189 (332)
427 cd02037 MRP-like MRP (Multiple 94.6 0.26 6.8E-06 27.2 7.9 116 19-135 7-132 (169)
428 KOG0447 consensus 94.6 0.3 7.6E-06 26.8 8.0 127 11-138 306-493 (980)
429 TIGR02782 TrbB_P P-type conjug 94.6 0.033 8.3E-07 32.8 3.1 26 13-38 140-165 (315)
430 PRK13948 shikimate kinase; Pro 94.4 0.054 1.4E-06 31.4 3.9 50 7-60 5-54 (182)
431 COG1161 Predicted GTPases [Gen 94.4 0.052 1.3E-06 31.5 3.8 57 10-80 130-186 (322)
432 PRK10246 exonuclease subunit S 94.4 0.22 5.6E-06 27.7 6.9 65 15-79 33-98 (1047)
433 pfam09140 MipZ ATPase MipZ. Mi 94.3 0.1 2.6E-06 29.7 5.1 84 20-105 9-131 (261)
434 pfam09547 Spore_IV_A Stage IV 94.3 0.059 1.5E-06 31.2 3.8 128 7-136 12-192 (492)
435 KOG1533 consensus 94.2 0.093 2.4E-06 30.0 4.8 125 14-139 4-178 (290)
436 COG1763 MobB Molybdopterin-gua 94.1 0.36 9.2E-06 26.3 7.6 50 14-84 4-53 (161)
437 PRK13851 type IV secretion sys 94.1 0.057 1.4E-06 31.3 3.4 16 187-202 176-191 (343)
438 PRK08118 topology modulation p 94.1 0.057 1.5E-06 31.3 3.4 24 14-37 3-26 (167)
439 CHL00175 minD septum-site dete 94.0 0.086 2.2E-06 30.2 4.3 66 68-135 122-187 (279)
440 cd03279 ABC_sbcCD SbcCD and ot 93.9 0.22 5.7E-06 27.6 6.2 80 15-101 31-117 (213)
441 PRK07261 topology modulation p 93.9 0.065 1.7E-06 30.9 3.4 24 14-37 2-25 (171)
442 cd01130 VirB11-like_ATPase Typ 93.9 0.04 1E-06 32.2 2.3 28 10-37 23-50 (186)
443 COG4962 CpaF Flp pilus assembl 93.8 0.092 2.3E-06 30.0 4.1 16 187-202 187-202 (355)
444 KOG1424 consensus 93.6 0.08 2E-06 30.4 3.4 81 83-172 163-244 (562)
445 KOG1424 consensus 93.5 0.12 3E-06 29.4 4.2 44 69-116 175-226 (562)
446 cd01900 YchF YchF subfamily. 93.4 0.19 5E-06 28.0 5.2 80 15-106 1-104 (274)
447 TIGR01526 nadR_NMN_Atrans nico 93.3 0.089 2.3E-06 30.1 3.4 23 80-105 16-38 (346)
448 cd01899 Ygr210 Ygr210 subfamil 93.3 0.2 5E-06 28.0 5.0 88 15-105 1-110 (318)
449 PRK13695 putative NTPase; Prov 93.2 0.46 1.2E-05 25.6 6.8 28 12-39 3-30 (174)
450 PRK07667 uridine kinase; Provi 93.1 0.16 4.1E-06 28.5 4.4 32 8-39 10-41 (190)
451 TIGR02768 TraA_Ti Ti-type conj 93.0 0.08 2E-06 30.4 2.7 79 15-102 433-535 (888)
452 pfam00437 GSPII_E Type II/IV s 93.0 0.35 8.9E-06 26.4 6.0 13 188-200 154-166 (283)
453 KOG0072 consensus 93.0 0.032 8.3E-07 32.8 0.7 137 13-173 19-164 (182)
454 pfam03205 MobB Molybdopterin g 92.9 0.13 3.3E-06 29.1 3.7 26 14-39 2-27 (122)
455 TIGR01184 ntrCD nitrate ABC tr 92.9 0.084 2.1E-06 30.2 2.6 21 15-35 14-34 (230)
456 KOG0097 consensus 92.8 0.69 1.7E-05 24.6 7.9 140 13-175 12-160 (215)
457 TIGR01969 minD_arch cell divis 92.8 0.23 5.8E-06 27.6 4.8 81 69-155 108-188 (258)
458 KOG0093 consensus 92.7 0.43 1.1E-05 25.8 6.1 141 14-172 23-167 (193)
459 cd03253 ABCC_ATM1_transporter 92.6 0.097 2.5E-06 29.9 2.7 24 14-37 29-52 (236)
460 cd03369 ABCC_NFT1 Domain 2 of 92.5 0.13 3.4E-06 29.0 3.3 25 14-38 36-60 (207)
461 PRK07429 phosphoribulokinase; 92.5 0.24 6E-06 27.5 4.6 31 9-40 6-36 (331)
462 cd03289 ABCC_CFTR2 The CFTR su 92.5 0.11 2.8E-06 29.5 2.9 25 14-38 32-56 (275)
463 cd02023 UMPK Uridine monophosp 92.4 0.13 3.3E-06 29.1 3.1 23 15-37 2-24 (198)
464 TIGR00487 IF-2 translation ini 92.4 0.037 9.5E-07 32.4 0.3 83 209-293 501-583 (594)
465 cd03252 ABCC_Hemolysin The ABC 92.3 0.092 2.3E-06 30.0 2.2 25 14-38 30-54 (237)
466 COG0419 SbcC ATPase involved i 92.3 0.81 2.1E-05 24.1 7.3 62 15-78 28-90 (908)
467 pfam00485 PRK Phosphoribulokin 92.2 0.14 3.5E-06 28.9 3.0 26 15-40 2-27 (196)
468 PRK13631 cbiO cobalt transport 92.1 0.12 3.1E-06 29.3 2.7 24 14-37 54-77 (320)
469 PRK09270 frcK putative fructos 92.1 0.25 6.3E-06 27.3 4.2 30 10-39 32-61 (230)
470 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.1 0.15 3.8E-06 28.7 3.1 24 14-37 31-54 (238)
471 COG0563 Adk Adenylate kinase a 92.0 0.16 4.1E-06 28.5 3.2 23 14-36 2-24 (178)
472 cd00464 SK Shikimate kinase (S 92.0 0.16 4E-06 28.5 3.2 43 14-60 1-43 (154)
473 PTZ00258 GTP-binding protein; 92.0 0.41 1E-05 26.0 5.3 88 6-105 16-127 (392)
474 TIGR00618 sbcc exonuclease Sbc 91.8 0.13 3.4E-06 29.0 2.6 25 14-38 32-57 (1063)
475 KOG1487 consensus 91.8 0.13 3.4E-06 29.0 2.6 56 14-81 61-116 (358)
476 COG0489 Mrp ATPases involved i 91.8 0.93 2.4E-05 23.8 8.1 67 69-137 165-232 (265)
477 PRK13644 cbiO cobalt transport 91.7 0.15 3.7E-06 28.8 2.7 24 14-37 30-53 (274)
478 PTZ00243 ABC transporter; Prov 91.6 0.14 3.7E-06 28.8 2.6 20 15-34 689-708 (1560)
479 pfam03266 DUF265 Protein of un 91.6 0.66 1.7E-05 24.7 6.0 27 14-40 1-27 (168)
480 cd03291 ABCC_CFTR1 The CFTR su 91.5 0.16 4E-06 28.5 2.8 25 14-38 65-89 (282)
481 cd03246 ABCC_Protease_Secretio 91.5 0.16 4.2E-06 28.4 2.8 25 14-38 30-54 (173)
482 cd03290 ABCC_SUR1_N The SUR do 91.4 0.15 3.9E-06 28.6 2.6 25 14-38 29-53 (218)
483 TIGR00957 MRP_assoc_pro multi 91.4 0.17 4.4E-06 28.3 2.8 24 15-38 670-693 (1542)
484 PRK13646 cbiO cobalt transport 91.4 0.16 4.2E-06 28.4 2.7 24 14-37 35-58 (286)
485 COG3523 IcmF Type VI protein s 91.4 0.17 4.4E-06 28.3 2.8 119 14-146 127-279 (1188)
486 PRK05057 aroK shikimate kinase 91.3 0.25 6.3E-06 27.3 3.6 43 14-60 6-48 (172)
487 PRK13657 cyclic beta-1,2-gluca 91.3 0.18 4.6E-06 28.2 2.9 32 357-388 523-554 (585)
488 PRK13833 conjugal transfer pro 91.2 0.17 4.3E-06 28.4 2.6 11 188-198 159-169 (323)
489 KOG0088 consensus 91.2 0.91 2.3E-05 23.8 6.4 108 13-137 14-131 (218)
490 cd02030 NDUO42 NADH:Ubiquinone 91.2 0.21 5.4E-06 27.8 3.1 23 15-37 2-24 (219)
491 cd03251 ABCC_MsbA MsbA is an e 91.2 0.18 4.7E-06 28.1 2.8 25 14-38 30-54 (234)
492 TIGR02324 CP_lyasePhnL phospho 91.2 0.16 4.2E-06 28.4 2.5 24 15-38 37-60 (224)
493 cd03230 ABC_DR_subfamily_A Thi 91.2 0.52 1.3E-05 25.4 5.1 25 14-38 28-52 (173)
494 KOG3883 consensus 91.2 1.1 2.7E-05 23.4 8.2 107 14-139 11-133 (198)
495 TIGR00955 3a01204 Pigment prec 91.2 0.16 4.1E-06 28.5 2.5 18 15-32 61-78 (671)
496 COG0012 Predicted GTPase, prob 91.1 0.3 7.6E-06 26.8 3.8 91 12-106 2-109 (372)
497 PRK13632 cbiO cobalt transport 91.1 0.17 4.3E-06 28.4 2.5 20 15-34 39-58 (273)
498 KOG0054 consensus 91.1 0.18 4.6E-06 28.2 2.7 20 15-34 550-569 (1381)
499 PRK13651 cobalt transporter AT 91.1 0.18 4.6E-06 28.2 2.7 20 15-34 36-55 (304)
500 PRK06696 uridine kinase; Valid 91.0 0.3 7.5E-06 26.9 3.7 28 13-40 27-54 (227)
No 1
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=749.74 Aligned_cols=391 Identities=60% Similarity=0.965 Sum_probs=360.9
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEE
Q ss_conf 9612421038827999990468988789999998764442-----00131268686986292063789998219908999
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK-----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSH 75 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~-----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~i 75 (392)
|+++.++++|||+||+++||||||||||+|+|++.+.+.. .....+|+++|||+||+||++++.+|++++++|+|
T Consensus 1 ~~~~~~~~~kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~ 80 (397)
T PRK00049 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAH 80 (397)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEE
T ss_conf 97334278998329999912588899999999866665438531001333025766762581699879999728814999
Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE
Q ss_conf 84787302467798774002331452012344332106778888631876023310023335612221101232100111
Q gi|254780263|r 76 IDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLK 155 (392)
Q Consensus 76 iD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~ 155 (392)
||+|||++|++||++|++++|+|+|||||++|+++||+||+.++++|||+++||||||||+++++++++.++.+++++|+
T Consensus 81 iD~PGH~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~~~~~~~~v~~~i~~~l~ 160 (397)
T PRK00049 81 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 160 (397)
T ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 51786388899987301215679999974888665289999999980998279999866888859999999999999998
Q ss_pred EEEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 01453-22102331146764114445652123320344310252222100001100000001355445430148742453
Q gi|254780263|r 156 EHKYS-DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRI 234 (392)
Q Consensus 156 ~~~~~-~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l 234 (392)
+.+|. .++|++|+|++.+++..+....+..+.+|++++++++|.|+++.++||||||+++|+++|+|+|++|+|+||++
T Consensus 161 ~~~f~~~~ipiv~~S~~~~~~~~~~~~~~~~i~~Ll~~ld~~~~~p~r~~~~p~r~~Id~vf~i~G~GtVVtGtv~sG~i 240 (397)
T PRK00049 161 KYDFPGDDTPIIRGSALKALEEIGDPEWEAKILELMEAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGII 240 (397)
T ss_pred HCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCEEEEEEEEEEEE
T ss_conf 46998444768985500311477865317899999999986477888888886077723388767972799989800056
Q ss_pred CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCC
Q ss_conf 48967999506874321254121001211443210013666411245432202117732677763000168999710567
Q gi|254780263|r 235 KAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASE 314 (392)
Q Consensus 235 ~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~ 314 (392)
++||++.++|... ..+++|++||+|++++++|.|||+|+++|+|++.++|+||+|||+|+++.+++.|+|++.+|+..+
T Consensus 241 ~~Gd~v~i~~~~~-~~~~~VksIq~~~~~v~~a~aG~~v~i~L~gi~~~~I~rG~vL~~p~~~~p~~~f~A~v~vL~~~~ 319 (397)
T PRK00049 241 KVGEEVEIVGIRD-TQKTTVTGVEMFRKLLDEGQAGDNVGLLLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEE 319 (397)
T ss_pred CCCCEEEEEECCC-CCEEEEEEEEECCEEEEEECCCCEEEEEECCCCHHHCCCCCEEECCCCCCCCEEEEEEEEEECCCC
T ss_conf 0799899960698-847999999962707026358877999977998898576019956998887729999999971545
Q ss_pred CCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 875555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 315 GGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
+.+..++..||++++|+++.++++++.+.++++.+++||.+.|+|+|.+|+|+++++||+|||+|+|+|+|.|++++|
T Consensus 320 ~~~h~pi~~gy~~~lh~~t~~v~~~i~l~~~~e~l~~Gd~a~v~i~l~~Pi~~e~g~RFvlRd~g~Tig~G~V~~vle 397 (397)
T PRK00049 320 GGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKIIE 397 (397)
T ss_pred CCCCCCCCCCCEEEEEEEECEEEEEEEECCCCCEECCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
T ss_conf 776565337826999985056999999368971635899899999989837864399899998997899999999879
No 2
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=748.03 Aligned_cols=391 Identities=60% Similarity=0.973 Sum_probs=363.1
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
|+||+++++|||+||+++||||||||||+|+|++.+.+.. +....+|+++|||+||+||++++++|++++++|+||
T Consensus 1 ~~~~~~~~~kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~i 80 (396)
T PRK12735 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHV 80 (396)
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEE
T ss_conf 97233278998349999942688589899998614545246431221221166567437737985699997398059998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|+|||++|++||++|++++|+|+|||||++|+++||+||+.++++|||+++||||||||+++++++++.++.+++++|++
T Consensus 81 D~PGHe~fiknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~~~~~~e~v~~~i~~~l~~ 160 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred ECCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 36866887766641004256799999868787531699999999839985899998758888199999999999999985
Q ss_pred EEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 1453-221023311467641144456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r 157 HKYS-DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235 (392)
Q Consensus 157 ~~~~-~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~ 235 (392)
.+|. +++|++++|++.++++++....++.+.+|++++++++|.|+++.++||||||+++|+++|+|+|++|+|+||+++
T Consensus 161 ~~f~~~~~piv~~S~~~~~~~~~~~~~~~~i~~Ll~~l~~~~~~p~r~~~~pfrl~Id~vf~v~G~GtVVtGtV~sG~i~ 240 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDAEWIGEAKILELMEALDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVK 240 (396)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 59996647799967337225887434447799999998852678777778865999764777679715999898121562
Q ss_pred CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 89679995068743212541210012114432100136664112454322021177326777630001689997105678
Q gi|254780263|r 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEG 315 (392)
Q Consensus 236 ~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~ 315 (392)
+||++.++|... ...++|+|||+|++++++|.|||+|+++|+|++.++++||||||+|+++.+++.|+|++.+|+..++
T Consensus 241 ~Gd~v~i~~~~~-~~~~~V~sIq~~~~~v~~a~aG~~v~l~L~gi~~~~i~rG~VL~~p~~~~~~~~f~a~v~vL~~~~~ 319 (396)
T PRK12735 241 VGDEVEIVGIKD-TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEG 319 (396)
T ss_pred CCCEEEEEECCC-CCEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCCCEEEEECCCCCCCCEEEEEEEEEECCCCC
T ss_conf 799899972699-8469999999867080271488789999479988985626799669987887299999999705557
Q ss_pred CCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 75555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 316 GRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
.+..++..||++++|+++.++++++.+.++++.+++|+.+.|+|+|.+|+|+++++||+|||+|+|+|+|.|++|+|
T Consensus 320 ~~h~pi~~g~~~~lh~~t~~v~~~i~~~~~~~~l~~G~~a~v~i~l~~Pi~~e~g~RFvlRd~g~Tig~G~V~~vle 396 (396)
T PRK12735 320 GRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 (396)
T ss_pred CCCCCCCCCCEEEEEEEECEEEEEEEECCCCCEECCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
T ss_conf 76565215827999996066999999658982757999899999989837865399899998996899999999889
No 3
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=755.79 Aligned_cols=374 Identities=35% Similarity=0.614 Sum_probs=341.7
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHH-----------HHHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEE
Q ss_conf 103882799999046898878999999-----------876444200131--------2686869862920637899982
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAIT-----------KYYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYE 67 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~-----------~~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~ 67 (392)
-|+|+|+|+++|||||||||||+|+|+ .++.+++.+.++ ||++++|||||+|||+++.-|+
T Consensus 2 aKeK~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFe 81 (445)
T TIGR00483 2 AKEKEHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFE 81 (445)
T ss_pred CCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCC
T ss_conf 76543244899825408850266777754289658999999875755187303676543110000015622433445417
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 1990899984787302467798774002331452012344-------332106778888631876023310023335612
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDG-------PKPQTREHILLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G-------~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
|++|.+|+||||||+||+||||+|+||||+|+||||..++ ++||||||++|++.|||+|+||||||||.|+|+
T Consensus 82 T~KY~~TivDcPGHRDFiKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD~V~yd 161 (445)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMDSVNYD 161 (445)
T ss_pred CCCEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCCCEECC
T ss_conf 88516999846987013431126675124279999525441024012178605778887750320453331024610027
Q ss_pred -HHHHHCCCCCCE-EEEEEEEEEEEECCCCEEEEEEECCC-----CCCCCCC------------CCCHHHHHHCCCCCCC
Q ss_conf -221101232100-11101453221023311467641144-----4565212------------3320344310252222
Q gi|254780263|r 141 -ELLDISEYEIRD-LLKEHKYSDDTPIIRGSALCALQGTN-----KELGEDS------------IHALMKAVDTHIPTPQ 201 (392)
Q Consensus 141 -~~~~~i~~~i~~-~l~~~~~~~~~pii~~sa~~g~~~~n-----~~~~~~~------------~~~Ll~~i~~~~~~p~ 201 (392)
+.|+.++.++.+ +|+..||+.+- |++.|+++|+||| ..++||+ ++||+|+||. +..|+
T Consensus 162 ~~~f~~~~~~~s~~l~K~vGY~p~~--v~FiP~s~~~GDN~~~~s~~~PWYkgwe~e~~agvv~G~TL~EA~D~-~~~P~ 238 (445)
T TIGR00483 162 EEEFEALKKEVSEQLLKKVGYKPDE--VPFIPISAFEGDNVIKKSENTPWYKGWEKETKAGVVKGKTLLEALDA-LEPPE 238 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCC--CCEEEECCCCCCCHHHHHCCCCCCCCCCCCCCCEEECCCHHHHHHHH-HCCCC
T ss_conf 7899999999999899874887561--23254035467613433038885255220002302218458988731-04786
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 10000110000000135544543014874245348967999506874321254121001211443210013666411245
Q gi|254780263|r 202 RSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVN 281 (392)
Q Consensus 202 ~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~ 281 (392)
+..|+|||+||||+|++.|+|||..|||++|.|+.|+.+.+-|.+ +..+|+||||||+.+++|.|||+||||++|++
T Consensus 239 kp~d~PLRiPiQDVY~I~GvGTVPVGRVEtGvl~~G~~V~F~PAG---VsgEVKSiEMHHE~i~~a~PGDNiGFNVrgVs 315 (445)
T TIGR00483 239 KPVDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAG---VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVS 315 (445)
T ss_pred CCCCCCCCCCCCCEEEECCEEECCCCCEECCEEECCCEEEECCCC---CCCCEEEEEECCCCCCCCCCCCCCCEEECCCC
T ss_conf 434677305530035753366223460202426448878963788---43121367611343667777874122001556
Q ss_pred CCEEECHHEEECCCC--CCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE-------------ECCCH
Q ss_conf 432202117732677--763000168999710567875555115978999954147779999-------------61895
Q gi|254780263|r 282 RADVPRGRVVCAPGS--IQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRII-------------LSPGS 346 (392)
Q Consensus 282 ~~di~rGdvl~~~~~--~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~-------------~~~~~ 346 (392)
..||+||||..++++ |..+..|+|+|++|. ||+.+..||+|.+||++++++|++. .+++|
T Consensus 316 ~kdIrRGdV~G~~~NdPP~v~~~F~A~~vVL~-----HP~~ItvGYtPV~~~HTA~~AC~F~EL~~K~d~rtG~~~Ee~P 390 (445)
T TIGR00483 316 KKDIRRGDVAGHPDNDPPKVAKEFTAQIVVLQ-----HPGAITVGYTPVLHAHTAQIACRFVELLKKLDPRTGQVLEENP 390 (445)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-----CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 02200143037888758721014412799972-----8976773565630143113333168888550733585014787
Q ss_pred HHHCCCCEEEEEEEECCCEEECC------CCEEEEEECCEEEEEEEEEEEE
Q ss_conf 57078976999999778177546------9849999899699989995531
Q gi|254780263|r 347 QAVMPGDRVDLEVELIYPIAMEP------NQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 347 ~~i~~g~~~~v~l~l~~pi~~e~------~~rfilRd~~~tig~G~I~~v~ 391 (392)
++|++||.|.|.+.+.+|+|+|. .+||++||+++|||+|+++++.
T Consensus 391 ~FLKtGdAA~VK~~PtkP~viE~~~~~P~lGRFAiRDMg~Tva~G~~~d~~ 441 (445)
T TIGR00483 391 QFLKTGDAAIVKLKPTKPMVIEKVKEIPPLGRFAIRDMGQTVAAGMIIDVK 441 (445)
T ss_pred CCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHCCEEEEEEEEEEC
T ss_conf 512467636899618997487200158986513413301204112678621
No 4
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=0 Score=736.87 Aligned_cols=388 Identities=61% Similarity=0.979 Sum_probs=359.4
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
|+|+.|+++|||+||+++||||||||||+|+|++.+++.+ +....+|+++|||+||+||++++++|++++++|+||
T Consensus 1 ~~~~~~~~~k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~i 80 (394)
T PRK12736 1 MAKEKFERSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEE
T ss_conf 96001278998749999951288489899897504545065102222331166556247821784189997288369998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|+|||++|++||++|++++|+|+|||||++|+++||+||+.++++|||+++||||||||+++++++++.++.+++++|+.
T Consensus 81 D~PGH~~fi~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~~~~~~~~v~~~i~~~l~~ 160 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred ECCCCHHHHCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88972543110444353466589999858774677999999999829991599998878998399999999999999987
Q ss_pred EEEEE-EEECCCCEEEEEEECCCCCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 14532-2102331146764114445652123-320344310252222100001100000001355445430148742453
Q gi|254780263|r 157 HKYSD-DTPIIRGSALCALQGTNKELGEDSI-HALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRI 234 (392)
Q Consensus 157 ~~~~~-~~pii~~sa~~g~~~~n~~~~~~~~-~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l 234 (392)
.+|.. ++|++++|+++++ |....|+.. .+|++++++++|.|+++.++||||||+++|+++|+|+|++|+|+||++
T Consensus 161 ~g~~~~~ip~i~~s~~~~~---~~~~~~~~~i~~Ll~~ld~~~~~p~r~~~~p~r~~Id~vf~v~G~GtVvtG~V~sG~i 237 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKAL---EGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFSITGRGTVVTGRVERGTV 237 (394)
T ss_pred CCCCCCCCCEEEEECCCCC---CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECEE
T ss_conf 6999120609984543613---6887357789999999985277888877776288711178608975899999801468
Q ss_pred CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCC
Q ss_conf 48967999506874321254121001211443210013666411245432202117732677763000168999710567
Q gi|254780263|r 235 KAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASE 314 (392)
Q Consensus 235 ~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~ 314 (392)
++||++.++|.. ....++|++|++|++++++|.|||+|+++|+|++.++++||||||+|+++.++++|+|++.||...+
T Consensus 238 ~~Gd~v~i~~~~-~~~~~~VrsI~~~~~~v~~a~aG~~v~l~L~gid~~~i~rG~vL~~~~~~~p~~~f~A~i~il~~~~ 316 (394)
T PRK12736 238 KVGDEVEIVGIK-ETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEE 316 (394)
T ss_pred ECCCEEEEEECC-CCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCHHHCCCEEEEECCCCCCCCCEEEEEEEEEECCC
T ss_conf 659989997079-9807999987367837248047678999976899899671669966998898709999999982456
Q ss_pred CCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 875555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 315 GGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
+.+.+++..||++++|+++.++++++.+.++++.+++|+.+.|+|+|.+|+|+++++||+|||+|+|+|+|.|++++|
T Consensus 317 ~~~~~pi~~g~~~~~~~~t~~v~~~i~l~~~~~~l~~Gd~a~v~l~l~~Pi~~e~g~RFvlRd~g~Tig~G~V~~vl~ 394 (394)
T PRK12736 317 GGRHTPFFTNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGVVTEILE 394 (394)
T ss_pred CCCCCCCCCCCEEEEEEEECEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCEEEEEECCEEEEEEEEEEEEC
T ss_conf 666554017827999997356999999458973408999899999989728765699899998995799999999889
No 5
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=0 Score=725.86 Aligned_cols=391 Identities=56% Similarity=0.923 Sum_probs=355.6
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
|+.+.|+|+|||+||+++||||||||||+|+|+...+... +...++|++++||+||+||++++.+|++++++|+||
T Consensus 1 ~~~~~~~~~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~i 80 (409)
T CHL00071 1 MAREKFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHV 80 (409)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEE
T ss_conf 96000368998699999954588399999998645300451334315532379768736944880248996287599998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|+|||++|++||++|++++|+|+|||||++|+++||+||+.|+++||||++||||||||+++++++++.++.+++++|++
T Consensus 81 D~PGH~~fv~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~~~~~~e~i~~~i~~~l~~ 160 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLDK 160 (409)
T ss_pred ECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 67967899999875230158128999868788500499999999739993655555679854899999999999999997
Q ss_pred EEEEE-EEECCCCEEEEEEECCC-------CCCCCCCC-CCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEE
Q ss_conf 14532-21023311467641144-------45652123-32034431025222210000110000000135544543014
Q gi|254780263|r 157 HKYSD-DTPIIRGSALCALQGTN-------KELGEDSI-HALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTG 227 (392)
Q Consensus 157 ~~~~~-~~pii~~sa~~g~~~~n-------~~~~~~~~-~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~G 227 (392)
.+|.. ++|++|+|++.+++... ...+||.. .+|++.|++++|.|+++.++||||||+++|+++|+|+|++|
T Consensus 161 ~g~~~~~i~~vp~sa~~~~~~~~~~~~~~~~~~~w~~~~~~Ll~~l~~~~p~~~r~~~~p~r~~Id~vf~v~G~GtVv~G 240 (409)
T CHL00071 161 YDFPGDEIPIVAGSALLALEALIENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATG 240 (409)
T ss_pred CCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCEEECCCCEEEEEE
T ss_conf 39984556089652133234312587545565612447999999887237788887677606442214753897889999
Q ss_pred EEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEE
Q ss_conf 87424534896799950687432125412100121144321001366641124543220211773267776300016899
Q gi|254780263|r 228 CIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASV 307 (392)
Q Consensus 228 rV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i 307 (392)
+|+||++++||++.++|.. +...++|++|+.+++++++|.|||+|+++|+|++..+|+||||||+|+++.++++|+|++
T Consensus 241 ~v~sG~v~~Gd~v~i~~~~-~~~~~~VksI~~~~~~~~~a~aG~~v~l~L~gi~~~~I~rG~VL~~p~~~~~~~~F~A~I 319 (409)
T CHL00071 241 RIERGTVKVGDTVEIVGLR-ETRTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQV 319 (409)
T ss_pred EEEECCCCCCCEEEEEECC-CCCEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCCCEEEEECCCCCCCCEEEEEEE
T ss_conf 9914563499989999769-986079999998895988887998899997599878877468996899998731999999
Q ss_pred EEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEC-----CCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEE
Q ss_conf 971056787555511597899995414777999961-----895570789769999997781775469849999899699
Q gi|254780263|r 308 YILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILS-----PGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTV 382 (392)
Q Consensus 308 ~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~-----~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~ti 382 (392)
.||+..++.+..+++.||++++|+++.++++++... ..++.+++||.+.|+|+|.+|+|+++++||+|||+|+|+
T Consensus 320 ~iL~~~~~~~~~pi~~g~~~~lh~~t~~~~~~I~~l~~~~~~~~~~l~~Gd~a~v~~~l~~Pi~ie~g~RfilRd~g~Ti 399 (409)
T CHL00071 320 YILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKAEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRTV 399 (409)
T ss_pred EEEECCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCEECCCCEEEEEEEECCCEEECCCCEEEEEECCEEE
T ss_conf 99867667765531589758999985499999999603577786173689989999998940887659989999899889
Q ss_pred EEEEEEEEEC
Q ss_conf 9899955319
Q gi|254780263|r 383 GAGLILEIIE 392 (392)
Q Consensus 383 g~G~I~~v~e 392 (392)
|+|+|++|+|
T Consensus 400 g~G~V~~v~~ 409 (409)
T CHL00071 400 GAGVVSKIIK 409 (409)
T ss_pred EEEEEEEEEC
T ss_conf 9999999869
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=0 Score=702.71 Aligned_cols=377 Identities=37% Similarity=0.593 Sum_probs=336.4
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEE
Q ss_conf 1038827999990468988789999998-----------76444200131--------2686869862920637899982
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYE 67 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~ 67 (392)
.++|||+||+++||||||||||+|+|+. .+.+++.+.++ ||++++||+||+|||+++.+|+
T Consensus 2 ~~~K~~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~ 81 (426)
T PRK12317 2 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 81 (426)
T ss_pred CCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEE
T ss_conf 99897849999952287688887689877299448999999989986487752143212578668755827883169995
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC--CCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHH
Q ss_conf 199089998478730246779877400233145201234--4332106778888631876023310023335612-2211
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAED--GPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLD 144 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~--G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~ 144 (392)
+++++|+|+|+|||++|++||++|++++|+|+|||||++ |+++||+||+.|+++|||+++||||||||+++|+ ++|+
T Consensus 82 ~~~~~~~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~~~~~~ 161 (426)
T PRK12317 82 TDKYYFTIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYN 161 (426)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHH
T ss_conf 49816999878963667877874534677279999636566764778999999998099839999953335677889999
Q ss_pred HCCCCCCEEEEEEEEE-EEEECCCCEEEEEEECCC--CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf 0123210011101453-221023311467641144--4565212332034431025222210000110000000135544
Q gi|254780263|r 145 ISEYEIRDLLKEHKYS-DDTPIIRGSALCALQGTN--KELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGR 221 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~-~~~pii~~sa~~g~~~~n--~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~ 221 (392)
+++.++.++|++.+|+ .++|++|+|+++|.+..+ ..++||++++|+++|++ ++.|.+..++||||||+++|+++|.
T Consensus 162 ~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLl~~L~~-~~~~~~~~~~p~r~~I~~v~~~~g~ 240 (426)
T PRK12317 162 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSDNTPWYNGPTLLEALDA-LKPPEKPTDKPLRIPIQDVYSITGV 240 (426)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCCCEEEEEEEEEEECCC
T ss_conf 999999999997098803470887532346564116766863220789999863-7777665578535578778840687
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC-CCCC
Q ss_conf 543014874245348967999506874321254121001211443210013666411245432202117732677-7630
Q gi|254780263|r 222 GTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS-IQEY 300 (392)
Q Consensus 222 G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~-~~~~ 300 (392)
|+|++|+|+||++++||++.++|++ ..++|++|+.++.++++|.|||+|+++|++++..||+||||||++++ |..+
T Consensus 241 Gtvv~G~v~sG~i~~Gd~v~i~Ps~---~~~~VksI~~~~~~v~~a~aG~~v~l~L~~i~~~dI~rG~Vl~~~~~~~~~~ 317 (426)
T PRK12317 241 GTVPVGRVETGVLKVGDKVVFMPAG---KVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKNDIKRGDVAGHTDNPPTVA 317 (426)
T ss_pred EEEEEEEECCCCCCCCCEEEEECCC---CCEEEEEEEECCCEEEEEECCCEEEEEEECCCHHCCCCCCEEECCCCCCCEE
T ss_conf 0799868443854379999996799---8658976886694788995898699998367442277864894799998430
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 001689997105678755551159789999541477799996-------------1895570789769999997781775
Q gi|254780263|r 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEVELIYPIAM 367 (392)
Q Consensus 301 ~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l~l~~pi~~ 367 (392)
++|+|++.||+ ++..+..||++.+|+++.++.|++.. +++++++++||.+.|+|++.+|+|+
T Consensus 318 ~~F~A~i~~l~-----~~~~i~~G~~~vlh~~t~~~~~~i~~I~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~ 392 (426)
T PRK12317 318 EEFTAQIVVLQ-----HPSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVVEENPQFIKTGDAAIVKIKPTKPLVI 392 (426)
T ss_pred EEEEEEEEEEC-----CCCCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEE
T ss_conf 08999999974-----8986789967999953668999999989998278775513585460899989999998984887
Q ss_pred CCCC------EEEEEECCEEEEEEEEEEEEC
Q ss_conf 4698------499998996999899955319
Q gi|254780263|r 368 EPNQ------TFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 368 e~~~------rfilRd~~~tig~G~I~~v~e 392 (392)
|+|+ ||+|||+|+|||+|+|++|..
T Consensus 393 e~~~~~~~lGrFiLrd~~~TVa~G~I~~v~p 423 (426)
T PRK12317 393 EKVSEIPQLGRFAIRDMGQTVAAGMVIDVKP 423 (426)
T ss_pred ECCCCCCCCCEEEEEECCCEEEEEEEEEEEC
T ss_conf 0455478776499998991499999987417
No 7
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=0 Score=695.17 Aligned_cols=377 Identities=31% Similarity=0.457 Sum_probs=333.9
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEE
Q ss_conf 1038827999990468988789999998-----------76444200131--------2686869862920637899982
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYE 67 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~ 67 (392)
-++|||+||+++||||||||||+|+|+. .+.+++.+.++ ||++++||+||+|||+++++|+
T Consensus 2 ~~~K~~lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~ 81 (449)
T PTZ00336 2 GKDKVHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFE 81 (449)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEE
T ss_conf 99886439999927789688889999987488478999999999987187514325451277223228758986799997
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CHHHHHHHHHHCCCCCEEEEECCCC--CCC
Q ss_conf 1990899984787302467798774002331452012344332-------1067788886318760233100233--356
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKP-------QTREHILLARQIGISSIVVYMNKVD--AVD 138 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~-------QT~eh~~l~~~lgi~~iIv~iNKmD--~v~ 138 (392)
+++++|+|+|+|||++|++||++|++++|+|||||||++|+++ ||+||+.|+++|||+++|||||||| .++
T Consensus 82 t~~~~~~iiD~PGH~~fi~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~ 161 (449)
T PTZ00336 82 SPKSVFTIIDAPGHRDFIKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVT 161 (449)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 49848999868946888999997650067679999878774103556677539999999866997799998620156621
Q ss_pred CH-HHHHHCCCCCCEEEEEEEEEE-EEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf 12-221101232100111014532-2102331146764114--4456521233203443102522221000011000000
Q gi|254780263|r 139 DD-ELLDISEYEIRDLLKEHKYSD-DTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEG 214 (392)
Q Consensus 139 ~~-~~~~~i~~~i~~~l~~~~~~~-~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~ 214 (392)
|+ ++|+++..++..+|++.+|+. ++++||+||++|.+.. ...++||.+++|+++|+. ++.|.++.++||||||++
T Consensus 162 ~~~~r~~~i~~e~~~~l~~~g~~~~~v~~IPiSa~~Gdni~~~s~~~~Wy~GptLl~~Ld~-~~~~~r~~~~p~r~pV~~ 240 (449)
T PTZ00336 162 YAQSRYDEISKEVGAYLKRVGYNPEKVRFIPISGWQGDNMIEKSDNMPWYKGPTLLDALDM-LEPPVRPVDKPLRLPLQD 240 (449)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHC-CCCCCCCCCCCCCCCCCE
T ss_conf 1378999999999999987499900054354201047775326555754105248999754-489877566764234010
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECC
Q ss_conf 01355445430148742453489679995068743212541210012114432100136664112454322021177326
Q gi|254780263|r 215 SCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAP 294 (392)
Q Consensus 215 vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~ 294 (392)
+|+++|.|+|++|+|+||++++||++.++|.+ ..++|++|+++++++++|.|||+|+++|++++..||+|||+++.+
T Consensus 241 vf~~~g~gtvv~G~V~sG~v~~Gd~V~i~Ps~---~~~~VksI~~~~~~v~~A~aG~~V~i~L~~i~~~dI~rGdVl~~~ 317 (449)
T PTZ00336 241 VYKIGGIGTVPVGRVETGIMKPGDVVTFAPAN---VTTEVKSIEMHHEQLAEAQPGDNVGFNVKNVSVKDIRRGNVCGNS 317 (449)
T ss_pred EEECCCCCEEEEEEEECCCCCCCCEEEECCCC---CEEEEEEEEECCCEECEECCCCEEEEECCCCCHHCCCCCCEEECC
T ss_conf 77327883188899943630589999991799---879998999899385967799847892488735307886399628
Q ss_pred --CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEE
Q ss_conf --777630001689997105678755551159789999541477799996-------------18955707897699999
Q gi|254780263|r 295 --GSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEV 359 (392)
Q Consensus 295 --~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l 359 (392)
++|..+.+|+|+++||+. +..+..+|++.+++++.++.|++.. .++|++|++||.|.|+|
T Consensus 318 ~~~~p~~~~~F~A~v~~l~~-----~~~i~~Gy~~~l~~~t~~v~~~i~~I~~kid~~tg~~~~~~p~~l~~ndia~v~l 392 (449)
T PTZ00336 318 KNDPPKEAADFTAQVIVLNH-----PGQISNGYAPVLDCHTSHIACRFAEIESKIDRRSGKELEKNPKAIKSGDAAIVKM 392 (449)
T ss_pred CCCCCCCCCEEEEEEEEECC-----CCCCCCCCCEEEECCCCEEEEEEEEEEEEECCCCCCEECCCCCCCCCCCEEEEEE
T ss_conf 99998414579999999678-----8765899426999653689999999889985899858056833549999899999
Q ss_pred EECCCEEECCC------CEEEEEECCEEEEEEEEEEEEC
Q ss_conf 97781775469------8499998996999899955319
Q gi|254780263|r 360 ELIYPIAMEPN------QTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 360 ~l~~pi~~e~~------~rfilRd~~~tig~G~I~~v~e 392 (392)
++.+|+|+|+| +||+|||+|+|||+|+|++|.|
T Consensus 393 ~~~~pi~~e~y~~~~~lGrFiLrd~~~TVa~G~I~~v~~ 431 (449)
T PTZ00336 393 VPQKPMCVEVFNDYAPLGRFAVRDMRQTVAVGIIKGVNK 431 (449)
T ss_pred EECCCEEEECCCCCCCCCCEEEEECCEEEEEEEEEEEEC
T ss_conf 989928881356687876489998992799999999974
No 8
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=100.00 E-value=0 Score=695.31 Aligned_cols=377 Identities=32% Similarity=0.509 Sum_probs=334.0
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHH-----------HHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEE
Q ss_conf 10388279999904689887899999987-----------6444200131--------2686869862920637899982
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKY-----------YSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYE 67 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~-----------~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~ 67 (392)
-++|||+||+++||||||||||+|+|+.. +.++....++ ||++++||+||+|||+++++|+
T Consensus 2 ~~~k~~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~ 81 (443)
T PTZ00141 2 GKEKTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE 81 (443)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEE
T ss_conf 98887659999947798288889999987388468899999888887178720004453077667636710734799994
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-------CHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 1990899984787302467798774002331452012344332-------106778888631876023310023335612
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKP-------QTREHILLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~-------QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
+++++|+|+|+|||++|++||++|++++|+|||||||++|+++ ||+||+.|+++|||+++||||||||+|+|+
T Consensus 82 t~~~~~~iiD~PGH~~fi~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD~v~~~ 161 (443)
T PTZ00141 82 TPKYYYTVIDAPGHRDFIKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMDTCDYK 161 (443)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCH
T ss_conf 39889999989972888999996341077589999867785213466678639999999973997599999962156660
Q ss_pred -HHHHHCCCCCCEEEEEEEEEE-EEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCC
Q ss_conf -221101232100111014532-2102331146764114--445652123320344310252222100001100000001
Q gi|254780263|r 141 -ELLDISEYEIRDLLKEHKYSD-DTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSC 216 (392)
Q Consensus 141 -~~~~~i~~~i~~~l~~~~~~~-~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf 216 (392)
++|++++.++.++|++.+|+. ++|++|+|++.|.+.. ...++||++++|+++|++ ++.|.++.++||||||+++|
T Consensus 162 e~~f~~i~~~~~~~l~~~g~~~~~i~~iPiSa~~Gdni~~~s~~~~Wy~G~tLle~Ld~-~~~~~~~~~~p~r~pI~~v~ 240 (443)
T PTZ00141 162 EDRYEEIQKEVCGYLKKVGYNAEKVPFVPISGFEGDNMIEKSDKMPWYKGKTLVEALDT-MEPPKRPVDKPLRLPLQGVY 240 (443)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHC-CCCCCCCCCCCCCCCEEEEE
T ss_conf 99999999999999997399956661896341246653246655644235689999856-89875655566534050388
Q ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC-
Q ss_conf 3554454301487424534896799950687432125412100121144321001366641124543220211773267-
Q gi|254780263|r 217 GIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG- 295 (392)
Q Consensus 217 ~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~- 295 (392)
+++|.|+|++|+|+||++++||++.++|++ ..++|++|+++++++++|.|||+|+++|++++..||+||||||++.
T Consensus 241 ~~~g~gtvv~G~V~sG~i~~Gd~v~i~Ps~---~~~~VksI~~~~~~v~~A~aG~~V~i~L~~i~~~dI~rG~Vl~~~~~ 317 (443)
T PTZ00141 241 KIGGIGTVPVGRVETGILKAGMVLTFAPSA---VTTECKSVEMHHEVVEEARPGDNVGFNVKNVSTKDIKRGHVASDSKN 317 (443)
T ss_pred EECCCCEEEEEEEEEEEEECCCEEEECCCC---CEEEEEEEEECCCEECEECCCCEEEEECCCCCHHHCCCCEEEECCCC
T ss_conf 616873278767615699569789987799---88999899989969087869983799458986530278619766999
Q ss_pred -CCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEEEE
Q ss_conf -77630001689997105678755551159789999541477799996-------------1895570789769999997
Q gi|254780263|r 296 -SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEVEL 361 (392)
Q Consensus 296 -~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l~l 361 (392)
++..+++|+|+++||+ ++.+++.||++.+++++.++.|++.. .++++++++||.|.|+|++
T Consensus 318 ~P~~~~~~F~A~v~~l~-----~~~~i~~G~~~~l~~~t~~~~~~i~~I~~~id~~t~~~~~~~p~~l~~nd~a~V~l~~ 392 (443)
T PTZ00141 318 DPAKGCSKFTAQVIVLN-----HPGEIKNGYSPVVDCHTAHISCKFLNIDSKMDKRSGKVLEENPKTIKSGDAALVSLKP 392 (443)
T ss_pred CCCCCCCEEEEEEEEEC-----CCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf 99762068999999968-----9876589963699934457999999988998678776547784364999889999998
Q ss_pred CCCEEECCC------CEEEEEECCEEEEEEEEEEEEC
Q ss_conf 781775469------8499998996999899955319
Q gi|254780263|r 362 IYPIAMEPN------QTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 362 ~~pi~~e~~------~rfilRd~~~tig~G~I~~v~e 392 (392)
.+|+|+|+| +||+|||+|+|+|+|+|++|.+
T Consensus 393 ~~pi~~e~y~~~~~lGrFiLrd~~~Tva~G~I~~V~~ 429 (443)
T PTZ00141 393 KKPMVVETFTEYPPLGRFAVRDMKQTVAVGVIKSVEK 429 (443)
T ss_pred CCEEEECCCCCCCCCCCEEEEECCEEEEEEEEEEEEC
T ss_conf 9856783677678876199998995799999999954
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=0 Score=685.22 Aligned_cols=373 Identities=25% Similarity=0.337 Sum_probs=326.6
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC----------CCCCHHHHHCCCEEEEEEEEE
Q ss_conf 038827999990468988789999998-----------76444200131----------268686986292063789998
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD----------IDSAPEEKLRGITIATAHVSY 66 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~----------~D~~~~E~~rGiTi~~~~~~~ 66 (392)
.+|++||++++||||||||||+|+|+. .+.++.+..+. ||.+++||+||||||+++.+|
T Consensus 23 ~~k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f 102 (475)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (475)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEE
T ss_conf 47985799999055797788889999981997889999999999982887772224442059988986697169567899
Q ss_pred ECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHH
Q ss_conf 21990899984787302467798774002331452012344332106778888631876023310023335612-22110
Q gi|254780263|r 67 ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDI 145 (392)
Q Consensus 67 ~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~ 145 (392)
+|++|+|+++|+|||++|+|||++|+|+||+|||||||++|+++|||||+.|+++|||+++||||||||+|+|+ ++|++
T Consensus 103 ~t~~r~~~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~~~~f~~ 182 (475)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFER 182 (475)
T ss_pred ECCCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCCHHHHHH
T ss_conf 53876899973796387788898888767889999989889478889999999865998599998504313543999999
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 123210011101453221023311467641144--456521233203443102522221000011000000013554454
Q gi|254780263|r 146 SEYEIRDLLKEHKYSDDTPIIRGSALCALQGTN--KELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGT 223 (392)
Q Consensus 146 i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n--~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~ 223 (392)
++.++.+++++.++..++++||+||+.|.|..+ ..++||++++|+++|++ ++.|.+..++||||||+++|+..+.++
T Consensus 183 I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv~~S~~m~WY~GptLle~Le~-~~~~~~~~~~pfRlPVq~V~r~~~~~r 261 (475)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQREVDAQPFRFPVQYVNRPNLDFR 261 (475)
T ss_pred HHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCCCCCCCCCCCCCCCEEEECCCCCCE
T ss_conf 9999999999749988850775413457676215667874567539999855-888876555665566579862687731
Q ss_pred CEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC-CCCCEE
Q ss_conf 3014874245348967999506874321254121001211443210013666411245432202117732677-763000
Q gi|254780263|r 224 VVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS-IQEYSR 302 (392)
Q Consensus 224 Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~-~~~~~~ 302 (392)
.++|||+||++++||++.++|++ ..++|++|+.++.++++|.|||+|+++|+ +..|++||||||++++ |..+++
T Consensus 262 g~~G~I~sG~i~~GD~V~vlPsg---~~a~Vk~I~~~~~~~~~A~aG~sV~l~L~--deiDIsRGdVl~~~~~~p~~s~~ 336 (475)
T PRK05124 262 GYAGTLASGVVKVGDRVKVLPSG---KESNVARIVTFDGDLEEAFAGEAITLVLE--DEIDISRGDLLVAADEAPPAAQH 336 (475)
T ss_pred EEEEEEEECEECCCCEEEECCCC---CEEEEEEEEECCCCCCCCCCCCEEEEEEE--CCCCCCCCCEEECCCCCCCCCCE
T ss_conf 68899713327179989993899---75898999965865254389987999960--34468998389738998670258
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEC-----------CCHHHHCCCCEEEEEEEECCCEEECCC-
Q ss_conf 16899971056787555511597899995414777999961-----------895570789769999997781775469-
Q gi|254780263|r 303 FRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILS-----------PGSQAVMPGDRVDLEVELIYPIAMEPN- 370 (392)
Q Consensus 303 f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~-----------~~~~~i~~g~~~~v~l~l~~pi~~e~~- 370 (392)
|+|+|+||+. .++..|+++.+++++..+.|++... ..+++|..||.+.|+|++.+|+|+|+|
T Consensus 337 F~A~Ivwm~~------~pL~~G~~y~lk~~t~~v~a~i~~I~~kiD~~T~~~~~~~~L~~Ndia~V~i~~~~pI~~d~y~ 410 (475)
T PRK05124 337 ASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQRDVENLPLNGIGLVELTFDEPLVLDPYQ 410 (475)
T ss_pred EEEEEEEECC------CCCCCCCEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEECCHH
T ss_conf 8999999548------7677998689998474998999873478857866717877118998899999989902612162
Q ss_pred -----CEEEEE--ECCEEEEEEEEEEEEC
Q ss_conf -----849999--8996999899955319
Q gi|254780263|r 371 -----QTFSMR--EGGKTVGAGLILEIIE 392 (392)
Q Consensus 371 -----~rfilR--d~~~tig~G~I~~v~e 392 (392)
+||+|+ .+|.|||+|+|++.++
T Consensus 411 ~~~~lGrFILIDr~t~~TVAaGmI~~~l~ 439 (475)
T PRK05124 411 QNRDTGGFILIDRLTNVTVGAGMVREPVE 439 (475)
T ss_pred HCCCCCCEEEEECCCCCEEEEEEEHHHHH
T ss_conf 39677858999879997899994803734
No 10
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=681.37 Aligned_cols=376 Identities=37% Similarity=0.559 Sum_probs=339.4
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEEC
Q ss_conf 038827999990468988789999998-----------76444200131--------26868698629206378999821
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYET 68 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~~ 68 (392)
..|||+|++++||||||||||+|+|+. ++.+++.+.++ ||++++|||||+||+.++++|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEEC
T ss_conf 87871289998378787034455657773797989999999999861977168999853886678666689977788643
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-
Q ss_conf 990899984787302467798774002331452012344-------332106778888631876023310023335612-
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDG-------PKPQTREHILLARQIGISSIVVYMNKVDAVDDD- 140 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G-------~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~- 140 (392)
+.+.+||+|||||+||++|||+|+||||+|+|||||+.| +++|||||+.|++.+||+++||||||||.++|+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCCEEEEEECCCHHHHHHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 77058996078467789876313313367999998889831014365875167899998569756999997156666279
Q ss_pred HHHHHCCCCCCEEEEEEEEEE-EEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 221101232100111014532-2102331146764114--4456521233203443102522221000011000000013
Q gi|254780263|r 141 ELLDISEYEIRDLLKEHKYSD-DTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCG 217 (392)
Q Consensus 141 ~~~~~i~~~i~~~l~~~~~~~-~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~ 217 (392)
++|++++.++..+++..+|++ +++|||+|+++|-|-. ...++||++++|+++|+ .++.|+++.|+|||+||+++|.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCCCCCCCCCEEEEEEEEEE
T ss_conf 999999999999999719986677079622446776332676786724871898974-5578987778881768001787
Q ss_pred CCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCC
Q ss_conf 55445430148742453489679995068743212541210012114432100136664112454322021177326777
Q gi|254780263|r 218 IEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSI 297 (392)
Q Consensus 218 i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~ 297 (392)
+.+.|+|..|||++|.|++||.+.+.|.+ ...+|+|+++|+++++.|.|||+|+++++|++..||+|||++++++++
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~---~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n~ 318 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAG---VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDNP 318 (428)
T ss_pred ECCCCEEEEEEEEEEEECCCCEEEEECCC---CEEEEEEEEECCCCCCCCCCCCEEEEEECCCCHHCCCCCCEECCCCCC
T ss_conf 16885478878861345169879996486---127876456126654447898768898357754316776574047888
Q ss_pred CC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE-------------ECCCHHHHCCCCEEEEEEEECC
Q ss_conf 63-000168999710567875555115978999954147779999-------------6189557078976999999778
Q gi|254780263|r 298 QE-YSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRII-------------LSPGSQAVMPGDRVDLEVELIY 363 (392)
Q Consensus 298 ~~-~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~-------------~~~~~~~i~~g~~~~v~l~l~~ 363 (392)
+. +..|.|++.+|+ ++..+..||++++|+++++++|++. .++++.++++|+.+.|.+++.+
T Consensus 319 ~t~~~~f~a~i~vl~-----~p~~i~~Gyt~vlh~hta~~a~~i~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~k 393 (428)
T COG5256 319 PTVSPEFTAQIIVLW-----HPGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEK 393 (428)
T ss_pred CCCCCCEEEEEEEEE-----CCCCCCCCCCCEEEECCCCEEEEHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEEEEECC
T ss_conf 643513167899980-----676324787617993253003357878875174324332468024425756899998247
Q ss_pred CEEECC------CCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 177546------98499998996999899955319
Q gi|254780263|r 364 PIAMEP------NQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 364 pi~~e~------~~rfilRd~~~tig~G~I~~v~e 392 (392)
|+|+++ .+||+|||+|+|||+|+|.++.+
T Consensus 394 P~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 394 PLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred CEEEEECCCCCCCCEEEEEECCCEEEEEEEEECCC
T ss_conf 54763201077222489980797698479974169
No 11
>KOG0460 consensus
Probab=100.00 E-value=0 Score=684.40 Aligned_cols=389 Identities=58% Similarity=0.969 Sum_probs=373.3
Q ss_pred HHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEEC
Q ss_conf 12421038827999990468988789999998764442----00131268686986292063789998219908999847
Q gi|254780263|r 3 EKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDC 78 (392)
Q Consensus 3 ~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~ 78 (392)
++.+.|+|||+|+++|||||||||||+.++|+.+.+.+ ..+..+|+-+|||.|||||+.++..|++..|+|.-+||
T Consensus 45 ~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DC 124 (449)
T KOG0460 45 KAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDC 124 (449)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 54412579865203300335772008999999997516501054766533826653561676435664224430014789
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 87302467798774002331452012344332106778888631876023310023335612221101232100111014
Q gi|254780263|r 79 PGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 79 PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
|||+||+||||+|++|+|+|||||+|++|+|||||||+.||+..||++++|+|||.|+|++++..|+++.|++++|..++
T Consensus 125 PGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460 125 PGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred CCHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 96388998753273236734999974789884068888889872876499997120246888999999999999999729
Q ss_pred EEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 532-2102331146764114445652123320344310252222100001100000001355445430148742453489
Q gi|254780263|r 159 YSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAG 237 (392)
Q Consensus 159 ~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~G 237 (392)
|+. +.|+|..||+|++++.++......+..|+|++|+++|.|+|+.++||.|||+++|+++|+|||++||++.|+|++|
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460 205 FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHEEEECCCCEEEEEEEEECCCCCC
T ss_conf 99887876632012222278842057999999998751589852135777404300246615883499877850221468
Q ss_pred CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCC
Q ss_conf 67999506874321254121001211443210013666411245432202117732677763000168999710567875
Q gi|254780263|r 238 SDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGR 317 (392)
Q Consensus 238 d~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~ 317 (392)
+++.+++.+. ..+..|..||+|++.+++|.|||++|+.|+|+..+|++||+|+|.|++..+.+.|+|++++|+.+++++
T Consensus 285 ~e~eivG~~~-~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGGR 363 (449)
T KOG0460 285 DEVEIVGHNK-TLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGGR 363 (449)
T ss_pred CEEEEECCCC-CEEEEEEHHHHHHHHHHHCCCCCCEEHHHHCCCHHHHHCCCEEECCCCCCCCCEEEEEEEEEEHHHCCC
T ss_conf 8789850676-404686269999877775015562016451477878744528736886540311259999987634897
Q ss_pred CCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 318 TTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
..+|..+|++++|+.+|++++++.+....+.++|||.+.+++.|.+|+++|+++||.||++|+|||.|+|+++++
T Consensus 364 ~~pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460 364 HKPFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred CCCHHHCCCHHHEEEECCCCEEEECCCHHHCCCCCCCEEEEEEEECCCCCCCCCEEEECCCCEEEEEEEEEEEEE
T ss_conf 364343364333144225505897167374036788707999982034467886246703880353236752000
No 12
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=673.49 Aligned_cols=389 Identities=61% Similarity=0.981 Sum_probs=370.3
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 961242103882799999046898878999999876444----2001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEE----KKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
|+|++|+|.|||+||++|||||||||||+.+|+..+.+. +......|..+|||+|||||+.++..|++.+++|..+
T Consensus 1 mak~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahV 80 (394)
T COG0050 1 MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHV 80 (394)
T ss_pred CCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEEC
T ss_conf 94455167987147878614247635289999999986324010333443048267645725401005886388148861
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|||||+||+||||+|++|+|+|||||+|++|++|||+||+++++..|+|+++|++||.|++++.++.++++.|++++|..
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 68974899998764077537628999847899986056420123428857999974223668689999999999999997
Q ss_pred EEEE-EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 1453-221023311467641144456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r 157 HKYS-DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235 (392)
Q Consensus 157 ~~~~-~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~ 235 (392)
++|. ++.|++..||+.+++++.. ...++..|++++++++|.|+|+.++||+|||.++|+++|+|+|++|||+.|+++
T Consensus 161 y~f~gd~~Pii~gSal~ale~~~~--~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lk 238 (394)
T COG0050 161 YGFPGDDTPIIRGSALKALEGDAK--WEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILK 238 (394)
T ss_pred CCCCCCCCCEEECHHHHHHCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEEEEEC
T ss_conf 399987763341123331037721--678999999999854899986556652010100689757516898788401241
Q ss_pred CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 89679995068743212541210012114432100136664112454322021177326777630001689997105678
Q gi|254780263|r 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEG 315 (392)
Q Consensus 236 ~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~ 315 (392)
+|+++.+.+.. ...+..+.+++||++..+++.|||+|++.|+|+.+.++.||++|+.|+++.+.++|+|++++|+.+++
T Consensus 239 vg~eveivG~~-~~~kttvtgvemfrk~ld~~~aGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeg 317 (394)
T COG0050 239 VGEEVEIVGIK-ETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEG 317 (394)
T ss_pred CCCEEEEECCC-CCCEEEEEHHHHHHHHHHCCCCCCCCCEEEEECCCCCEECCEEECCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 58779972564-55304887699999887404668985268972111335312076068866665210489999960217
Q ss_pred CCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 75555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 316 GRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
++.++|..||+|++|+.++++++-+.+-++.+.+++||.+.+.++|.+|+++|++.||++|++|+|+|+|.|.++++
T Consensus 318 grhtpff~~yrpqfyfRttDVtg~~~lpeg~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 318 GRHTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred CCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCEECCCCCEEEEEEEEEEEECCCCCEEEEEECCEEEEEEEEEECCC
T ss_conf 88788646766405898401455676167850414888448999986323217887899976886651147830019
No 13
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=0 Score=624.97 Aligned_cols=369 Identities=26% Similarity=0.336 Sum_probs=318.3
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC----------CCCCHHHHHCCCEEEEEEEEE
Q ss_conf 038827999990468988789999998-----------76444200131----------268686986292063789998
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD----------IDSAPEEKLRGITIATAHVSY 66 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~----------~D~~~~E~~rGiTi~~~~~~~ 66 (392)
.+|++||++++||||||||||+|+|+. .+.+..+..+. ||.+++|||+|||||++|.+|
T Consensus 3 ~~k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F 82 (613)
T PRK05506 3 ERKTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 82 (613)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEE
T ss_conf 77762589999366797888988999981996789999999999981898886035442148888985597168567788
Q ss_pred ECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHH
Q ss_conf 21990899984787302467798774002331452012344332106778888631876023310023335612-22110
Q gi|254780263|r 67 ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDI 145 (392)
Q Consensus 67 ~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~ 145 (392)
+|++|+|+|+|+|||++|++||++|+|+||+|||||||++|+++||++|+.|+++|||+++||||||||+|+|+ ++|+.
T Consensus 83 ~t~~r~~~i~DaPGH~~y~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~~~~f~~ 162 (613)
T PRK05506 83 STPKRKFIVADTPGHEQYTRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYDQEVFDR 162 (613)
T ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH
T ss_conf 43870599942896798998999878653879999988879515518999999872987599998520124781999999
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 12321001110145322102331146764114--4456521233203443102522221000011000000013554454
Q gi|254780263|r 146 SEYEIRDLLKEHKYSDDTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGT 223 (392)
Q Consensus 146 i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~ 223 (392)
++.++..++++.++. ++.+||+||+.|.|.. +..++||++++|++.|++. +.+....+.|||||||.|++...-.+
T Consensus 163 I~~~~~~~~~~l~~~-~~~~IPISAl~GDNVv~~S~~m~WY~GptLle~Le~~-~~~~~~~~~~fR~PVQ~V~Rp~~dfR 240 (613)
T PRK05506 163 IVADYLAFAAKLGLT-DVTFIPISALKGDNVVTRSARTPWYEGPSLLEHLETV-EIAGDRNLKDFRFPVQYVNRPNLDFR 240 (613)
T ss_pred HHHHHHHHHHHCCCC-CCEEEECCCCCCCEEEECCCCCCCCCCCCHHHHHHCC-CCCCCCCCCCCEEEEEEEECCCCCEE
T ss_conf 999999999657998-8759967357487476788788666786589997377-87866445671211178744787505
Q ss_pred CEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC-CCCCEE
Q ss_conf 3014874245348967999506874321254121001211443210013666411245432202117732677-763000
Q gi|254780263|r 224 VVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS-IQEYSR 302 (392)
Q Consensus 224 Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~-~~~~~~ 302 (392)
.++|||+||++++||++.++|++ .+++|++|+.++.++++|.+|+.|++.|. +..|++|||+|+++++ |..+++
T Consensus 241 gyaGrI~sG~ikvGD~V~vlPSg---~~s~Vk~I~~~~~~~~~A~agqSVtltL~--dEIDISRGDvI~~~~~~p~~s~~ 315 (613)
T PRK05506 241 GFAGTVASGVVRPGDEVVVLPSG---KTSRVKRIVTYDGELDEAFAGQAVTLTLA--DEIDISRGDMLARADNPPEVADQ 315 (613)
T ss_pred EEEEEECCEEECCCCEEEECCCC---CEEEEEEEECCCCCHHHCCCCCEEEEEEC--CCEECCCCCEEECCCCCCCCCCE
T ss_conf 79999841367269989987899---87999999868997641338980899974--62643798689648998870108
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-----------CCCHHHHCCCCEEEEEEEECCCEEECCC-
Q ss_conf 1689997105678755551159789999541477799996-----------1895570789769999997781775469-
Q gi|254780263|r 303 FRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-----------SPGSQAVMPGDRVDLEVELIYPIAMEPN- 370 (392)
Q Consensus 303 f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-----------~~~~~~i~~g~~~~v~l~l~~pi~~e~~- 370 (392)
|+|+++||+.. ++..|.++.+-.++..+.+++.. ......+..||++.|+|++.+|+++++|
T Consensus 316 f~A~lvWm~e~------pL~~gr~YllK~~t~~v~a~I~~I~~~iDinTl~~~~a~~L~lNdIg~V~l~l~~pI~~D~Y~ 389 (613)
T PRK05506 316 FDATLVWMAEE------PLLPGRPYLLKHGTRTVPASVAAIKHRVDVNTLERLAAKRLELNEIGRCNLSLDAPIAFDPYA 389 (613)
T ss_pred EEEEEEEECCC------CCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHH
T ss_conf 78999994498------767998899998777999999621689726751324435337874189999958973468365
Q ss_pred -----CEEEEEE--CCEEEEEEEEEE
Q ss_conf -----8499998--996999899955
Q gi|254780263|r 371 -----QTFSMRE--GGKTVGAGLILE 389 (392)
Q Consensus 371 -----~rfilRd--~~~tig~G~I~~ 389 (392)
++|+|.| ++.|+|+|+|..
T Consensus 390 ~n~~tGsFILID~~tn~TVaAGmI~~ 415 (613)
T PRK05506 390 RNRTTGSFILIDRLTNATVGAGMIDF 415 (613)
T ss_pred HCCCCCCEEEEECCCCCEEEEEEECH
T ss_conf 68666658999889995788983705
No 14
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=0 Score=608.19 Aligned_cols=354 Identities=32% Similarity=0.488 Sum_probs=309.8
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC----------------
Q ss_conf 4210388279999904689887899999987644420013126868698629206378999821----------------
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET---------------- 68 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---------------- 68 (392)
++++.|||+||+++||||||||||+++|++. .+|++++|++|||||+++|+++..
T Consensus 1 ~~~~~~p~vNIgtiGHVDHGKTTLv~aLTg~---------~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~ 71 (410)
T PRK04000 1 MWEFVQPEVNIGMVGHVDHGKTTLVQALTGV---------WTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEP 71 (410)
T ss_pred CCCCCCCCCEEEEEEEECCCHHHHHHHHHCC---------CCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEEC
T ss_conf 9877899526999965178699999887397---------5423887886488121051010012054555444135302
Q ss_pred ----------CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ----------9908999847873024677987740023314520123443-32106778888631876023310023335
Q gi|254780263|r 69 ----------DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 69 ----------~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
..++|+|||+|||++|++||++|++++|+|||||||++|+ ||||+||+.+++++||+++||++||||++
T Consensus 72 ~~~~~~~~~~~~r~is~VD~PGHe~fi~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv 151 (410)
T PRK04000 72 TCPKCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 151 (410)
T ss_pred CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 33444555443316999979887999999984021266799998657787677149999999980998379999625678
Q ss_pred CCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 61222110123210011101453221023311467641144456521233203443102522221000011000000013
Q gi|254780263|r 138 DDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCG 217 (392)
Q Consensus 138 ~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~ 217 (392)
++++..+ ..++++++|+... .++.|+||+||.++. +++.|+++|++++|.|.++.++||||+|+++|.
T Consensus 152 ~~e~~~~-~~~ei~~~l~g~~-~~~~piipvSa~~g~----------~i~~L~~~l~~~~~~p~r~~~~~f~m~Vdr~F~ 219 (410)
T PRK04000 152 SKEKALE-NYEQIKEFVKGTV-AENAPIIPVSALHGV----------NIDALIEAIEEEIPTPERDLDKPPLMYVARSFD 219 (410)
T ss_pred CHHHHHH-HHHHHHHHHCCCC-CCCCCEEEEECCCCC----------CCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
T ss_conf 9899999-9999999870676-568999996477788----------940899989862778777888994489988885
Q ss_pred CCCCCC--------CEEEEEEECCCCCCCEEEEEECCC---------CCCCEEEECCCCCCCCCCCCCCCHHHHHHHC--
Q ss_conf 554454--------301487424534896799950687---------4321254121001211443210013666411--
Q gi|254780263|r 218 IEGRGT--------VVTGCIKRGRIKAGSDVEIIGMGG---------KKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR-- 278 (392)
Q Consensus 218 i~g~G~--------Vv~GrV~sG~l~~Gd~i~i~p~~~---------~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk-- 278 (392)
+.|.|+ |++|+|++|++++||++.++|... ++..++|++|++|++++++|.||+++|++++
T Consensus 220 i~g~Gt~~~~~~G~VvtGtv~~G~ik~GD~vei~Pg~~~~~~~~~~~~pi~t~V~si~~~~~~~~~a~aG~~vai~~~ld 299 (410)
T PRK04000 220 VNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEKGGKTKWEPITTKITSLRAGGEKVEEARPGGLVGVGTKLD 299 (410)
T ss_pred ECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEECCEEHHEECCCCEEEECCCCC
T ss_conf 05798655356441788899762784299899944743345665311221269989974783911013676585223345
Q ss_pred -CCCCCEEECHHEEECCCCCCCC-EEEEEEEEEEECC----CCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCC
Q ss_conf -2454322021177326777630-0016899971056----787555511597899995414777999961895570789
Q gi|254780263|r 279 -GVNRADVPRGRVVCAPGSIQEY-SRFRASVYILTAS----EGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPG 352 (392)
Q Consensus 279 -gi~~~di~rGdvl~~~~~~~~~-~~f~A~i~il~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g 352 (392)
++...|+.||+|++.|+.++++ ..|++++.+|+.. +.....+++.++.+++|++++++.+++...+..
T Consensus 300 ~~i~r~D~~rG~Vl~~pg~l~p~~~~~~~~~~ll~~~~g~~~~~~~~plk~~~~~~~~~gTa~~~g~v~~~~~~------ 373 (410)
T PRK04000 300 PALTKADALAGSVAGKPGTLPPVWTSLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSAKKD------ 373 (410)
T ss_pred CCCCHHHHHCCCEEECCCCCCCCEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCC------
T ss_conf 55335574156554359976874169999999980112653346667765796489998116278999977898------
Q ss_pred CEEEEEEEECCCEEECCCCEEEE--EECCE--EEEEEEEE
Q ss_conf 76999999778177546984999--98996--99989995
Q gi|254780263|r 353 DRVDLEVELIYPIAMEPNQTFSM--REGGK--TVGAGLIL 388 (392)
Q Consensus 353 ~~~~v~l~l~~pi~~e~~~rfil--Rd~~~--tig~G~I~ 388 (392)
.++++|.+|+|++.++||+| |++++ |||+|.|.
T Consensus 374 ---~~~l~L~~Pv~~~~g~Rf~i~rr~~~r~rtIG~G~i~ 410 (410)
T PRK04000 374 ---EAEVKLKRPVCAEEGSRVAISRRVGGRWRLIGYGIIK 410 (410)
T ss_pred ---EEEEEECCCEECCCCCEEEEEEECCCCEEEEEEEEEC
T ss_conf ---7999969436368899899998359953787258969
No 15
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=0 Score=601.76 Aligned_cols=335 Identities=27% Similarity=0.407 Sum_probs=301.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219-90899984787302467798774
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
-|+++||||||||||+.+||+. ++|+++|||+|||||+++|++|..+ ++++.|||.|||++|++||++|+
T Consensus 2 IigTAGHVDHGKTsLvkALTG~---------dtDRL~EEk~RGiTIdLGFA~~~l~~g~~~g~VDVPGHErFIknMlAG~ 72 (615)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGV 72 (615)
T ss_pred EEEEECCCCCCHHHHHHHHHCC---------CCCCCHHHHHHCCEEEECEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 8996365477899999998688---------8656977897187277130755579997899987998389999997446
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEE
Q ss_conf 00233145201234433210677888863187602331002333561222110123210011101453221023311467
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALC 172 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~ 172 (392)
+.+|.++|||+|+||+||||+||+.++++|||++++||+||+|+|+++ +.+.++++++++++... ..+.|++++|+.+
T Consensus 73 ~gid~vlLVVAAdeGvMPQT~EHl~Il~lLgi~~giV~lTK~Dlvd~e-~l~~v~~ei~~~l~~t~-l~~~pi~~vSa~t 150 (615)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEA-RIDEVRRQVLEVLREYG-FAEAKLFVTAATE 150 (615)
T ss_pred HHCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHHCCC-CCCCCEEECCCCC
T ss_conf 437889999988998772379999999981998289999776568979-99999999999984478-7679752014566
Q ss_pred EEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCE
Q ss_conf 64114445652123320344310252222100001100000001355445430148742453489679995068743212
Q gi|254780263|r 173 ALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKV 252 (392)
Q Consensus 173 g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~ 252 (392)
| .+++.|.++|.... .+.++.+++||||||++|.++|.||||+|++.||++++||++.++|.+ ..+
T Consensus 151 g----------~Gi~~L~~~L~~l~-~~~~~~~~~fRL~IDRvFsvkG~GTVVTGTl~sG~v~~GD~l~i~P~~---~~~ 216 (615)
T PRK10512 151 G----------RGIDALREHLLQLP-EREHASQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN---KPM 216 (615)
T ss_pred C----------CCHHHHHHHHHHHC-CCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCC---CEE
T ss_conf 6----------79999999998625-566676776178831189626885699999814714269989986999---679
Q ss_pred EEECCCCCCCCCCCCCCCHHHHHHHCC-CCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEE
Q ss_conf 541210012114432100136664112-4543220211773267776300016899971056787555511597899995
Q gi|254780263|r 253 KCTDVEMFRKKLDEAIAGDNVGLLLRG-VNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFM 331 (392)
Q Consensus 253 kv~si~~~~~~v~~a~aGd~v~l~Lkg-i~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~ 331 (392)
+|++||.|++++++|.||++||+||+| ++.++|.|||+|+++++..+++++.+++. . ..+++++.+.++|+
T Consensus 217 rVR~iQ~h~~~v~~a~aG~R~AlNL~G~v~~~~i~RGd~L~~~~~~~~~~~~~v~l~---~-----~~~lk~~~~v~l~~ 288 (615)
T PRK10512 217 RVRALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQ---T-----HTPLTQWQPLHIHH 288 (615)
T ss_pred EEEEHHHCCCCCCEECCCCEEEEEECCCCCHHHCCCCCEEECCCCCCCEEEEEEEEC---C-----CCCCCCCCEEEEEE
T ss_conf 873477679815573277459996125446723178668923888775359999957---8-----99865893799996
Q ss_pred CCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEE--CCEEEEEEEEEEE
Q ss_conf 4147779999618955707897699999977817754698499998--9969998999553
Q gi|254780263|r 332 DTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMRE--GGKTVGAGLILEI 390 (392)
Q Consensus 332 ~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd--~~~tig~G~I~~v 390 (392)
|++++.||+.+.+. +++++.|++|+++..+|||+||+ ..+|||+|.|+++
T Consensus 289 Gt~~v~~rv~ll~~---------~~aqL~Le~pv~~~~GDRfIlR~~Sp~~TIGGG~VLd~ 340 (615)
T PRK10512 289 AASHVTGRVSLLED---------NLAELVFDTPLWLADNDRLVLRDISARNTLAGARVVML 340 (615)
T ss_pred CCCCEEEEEEECCC---------CEEEEEECCCEEEECCCEEEEECCCCCEEEEEEEEECC
T ss_conf 45102799995488---------46999978945455397689962888826762799688
No 16
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=100.00 E-value=0 Score=603.59 Aligned_cols=360 Identities=27% Similarity=0.402 Sum_probs=308.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHH-----------HHHH----HHHCCCC------CCCCHHHHHCCCEEEEEEEEEECCCE
Q ss_conf 7999990468988789999998-----------7644----4200131------26868698629206378999821990
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITK-----------YYSE----EKKEYGD------IDSAPEEKLRGITIATAHVSYETDKR 71 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~-----------~~~~----~~~~~~~------~D~~~~E~~rGiTi~~~~~~~~~~~~ 71 (392)
|++.+||+||.|||||+|||++ .+.. ++.+.+. +|.+..|||+|||||++|+||.|++|
T Consensus 1 LRflTCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVAYRYFsT~KR 80 (411)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (411)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 93352054458731022222555521689999998852255347887652341330677443248612133132577876
Q ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCC
Q ss_conf 899984787302467798774002331452012344332106778888631876023310023335612-2211012321
Q gi|254780263|r 72 FYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEI 150 (392)
Q Consensus 72 ~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i 150 (392)
+|.+-|||||+.|+|||.+|||.||.|||+|||++|+..|||+|..++.+|||+|+|+||||||||+|+ +.|+.|+++.
T Consensus 81 kFIvADTPGHEQYTRNMATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd~~vF~~I~~~y 160 (411)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (411)
T ss_pred CEEEECCCCCCCCCCCCCHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 17884085594154430000131124665542102134567799999886045389999970111476578899999999
Q ss_pred CEEEEEE-EEEEEEECCCCEEEEEEECC-C--CCCCCCCCCCHHHHHHCCCCCCC-CCCCCCCCEECCCCC--CC-CCCC
Q ss_conf 0011101-45322102331146764114-4--45652123320344310252222-100001100000001--35-5445
Q gi|254780263|r 151 RDLLKEH-KYSDDTPIIRGSALCALQGT-N--KELGEDSIHALMKAVDTHIPTPQ-RSLDAPFLMHIEGSC--GI-EGRG 222 (392)
Q Consensus 151 ~~~l~~~-~~~~~~pii~~sa~~g~~~~-n--~~~~~~~~~~Ll~~i~~~~~~p~-~~~~~p~r~~I~~vf--~i-~g~G 222 (392)
..|-.++ ++. ++.+||.||+.|-|.. + ..|+||.+|+|||.|++ +.... ...+.|||||||+|. +. .++|
T Consensus 161 ~~fa~~L~g~~-~~~~iP~SAL~GdNv~y~~S~~MpWY~GPtLle~LEt-v~~~~G~~~~~~lRfPVQyVnRPn~tdFRG 238 (411)
T TIGR02034 161 LAFAEQLAGVR-DVTFIPLSALKGDNVVYSRSESMPWYSGPTLLEHLET-VEVERGDAQDLPLRFPVQYVNRPNLTDFRG 238 (411)
T ss_pred HHHHHHCCCCC-EEEEEEEECCCCCCEEECCCCCCCCCCCCCHHHHCCC-CCCCCCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf 99998638983-4799873313687402256678887578806530040-000367422478720045652688866652
Q ss_pred CCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC-CCCCE
Q ss_conf 43014874245348967999506874321254121001211443210013666411245432202117732677-76300
Q gi|254780263|r 223 TVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS-IQEYS 301 (392)
Q Consensus 223 ~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~-~~~~~ 301 (392)
..|+|.||++++||+|.++|++ ..++|..|-++..++++|.+||.|+|.|+ ++.||+|||+|..+|. |+.+.
T Consensus 239 --yaGt~asG~v~~Gd~v~vlPSG---~~srV~rIVt~dg~l~~A~aG~AvTL~L~--~eiDisRGDll~~~D~~p~~~~ 311 (411)
T TIGR02034 239 --YAGTIASGSVKVGDEVVVLPSG---RSSRVARIVTFDGDLEQAVAGQAVTLVLD--DEIDISRGDLLAAADSAPEVAD 311 (411)
T ss_pred --HHHHEECCEECCCCEEEEEECC---CEEEEEEEEECCCCHHHCCCCCEEEEEEE--CEEEEECCHHHHCCCCCCCCCH
T ss_conf --2231022553459889996279---64435588704653300668753899860--0043320022122467787012
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------C----CCHHHHC-CCCEEEEEEEECCCEEECC
Q ss_conf 01689997105678755551159789999541477799996-------1----8955707-8976999999778177546
Q gi|254780263|r 302 RFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------S----PGSQAVM-PGDRVDLEVELIYPIAMEP 369 (392)
Q Consensus 302 ~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------~----~~~~~i~-~g~~~~v~l~l~~pi~~e~ 369 (392)
+|.|.+.||..+ ++.+|.++.+-.++..+.++|.. + ...+.+. -|+++.|+|.+++|+++|+
T Consensus 312 ~F~a~lVWm~~~------~l~PG~~Y~lk~g~~~v~a~v~~I~~~vdvn~~~~~~A~~L~GLN~iG~v~l~~~~~~~fd~ 385 (411)
T TIGR02034 312 QFAATLVWMADE------PLLPGRSYLLKLGTRKVRASVTAIKHKVDVNTLEKNAAKELEGLNEIGLVNLSLDEPIAFDA 385 (411)
T ss_pred HHEEEEEEECCC------CCCCCCEEEEEECCEEEEEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf 001256620113------45889537887324277589987779972464310221231068705799983066101354
Q ss_pred C------CEEEEEE--CCEEEEEEEE
Q ss_conf 9------8499998--9969998999
Q gi|254780263|r 370 N------QTFSMRE--GGKTVGAGLI 387 (392)
Q Consensus 370 ~------~rfilRd--~~~tig~G~I 387 (392)
| |.|||-| +|.|||+|||
T Consensus 386 Y~~nR~tG~FILIDr~sN~TVgAGmi 411 (411)
T TIGR02034 386 YAENRTTGAFILIDRLSNATVGAGMI 411 (411)
T ss_pred HHHCCCCEEEEEEECCCCCEECCCCC
T ss_conf 22188410279998466871124569
No 17
>TIGR00485 EF-Tu translation elongation factor Tu; InterPro: IPR004541 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A (or EF-Tu) proteins found primarily in bacteria, mitochondria and chloroplasts. Eukaryotic and archaeal EF1A (IPR004539 from INTERPRO) are excluded from this entry. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors . More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=574.45 Aligned_cols=389 Identities=59% Similarity=0.974 Sum_probs=368.5
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 9612421038827999990468988789999998764442----001312686869862920637899982199089998
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ii 76 (392)
|++++|.|.|+|+||+++||||||||||..+++..+.... .....+|..++|++|||||+.++..|+++.++|.-+
T Consensus 1 ~~~~~f~r~k~h~n~GtiGhvdhGkttl~aa~~~~l~~~~~~~~~~y~~id~aPee~~rGiti~~~~vey~~~~rhyahv 80 (394)
T TIGR00485 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGKAAAKKYDEIDKAPEEKARGITINTAHVEYETEKRHYAHV 80 (394)
T ss_pred CCCHHHHCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEEEEEEECCCCCCEEEE
T ss_conf 96001011467033301210015505789999999875100356767765237211334515653355421467515763
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|||||.||++||++|++|+|+|+|||+|.+|++|||+||+.|++..|+|.+++++||.|.++++++.++++.+++++|..
T Consensus 81 dCPGhadyvknmitGaaqmdGailvv~~~d~~mPqt~ehill~~~vGvP~~vvflnk~d~~~~~el~~lv~~e~~~ll~~ 160 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPKIVVFLNKVDMVDDEELLELVELEVRELLSE 160 (394)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 18862678887641011117607999527888874112100100268765787640233224278999999999999874
Q ss_pred EEEEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 14532-21023311467641144456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r 157 HKYSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235 (392)
Q Consensus 157 ~~~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~ 235 (392)
..|.. +.|++..||+.++++++ ....++..|++.+++++|.|.|..++||.|+|.++|.+.|+|+|++|||+.|.++
T Consensus 161 ~~f~G~~~Pi~~Gsal~al~~~~--~~~~~~~~l~~~vd~~i~~P~r~~~~~fl~~~ed~~~i~GrGtv~tGr~e~G~~~ 238 (394)
T TIGR00485 161 YDFPGDDVPIVRGSALKALEGDA--EWEEKILELMEAVDEYIPTPEREVDKPFLLPIEDVFSITGRGTVVTGRVERGVVK 238 (394)
T ss_pred CCCCCCCCCEEECHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEEEECCCEEEEEEEEECEEE
T ss_conf 07898652256114565420036--7999999999999865067511314411455310467504634785024304476
Q ss_pred CCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCC
Q ss_conf 89679995068743212541210012114432100136664112454322021177326777630001689997105678
Q gi|254780263|r 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEG 315 (392)
Q Consensus 236 ~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~ 315 (392)
+|+++.+.+... .....+.++++|++.++.+.|||++|+.|+|+...++.||.+|+.|++..+...|++.+++|..+++
T Consensus 239 v~~~v~~~G~~~-~~~~~vtGvemf~k~l~~~~aG~n~G~llrG~~~~~~~rG~v~~~P~~~~~~~~f~~~~y~l~k~eG 317 (394)
T TIGR00485 239 VGEEVEIVGLKD-TKKTTVTGVEMFRKELDEGEAGDNVGLLLRGIKKEEIERGMVLAKPGSIKPHKKFEAEVYVLKKEEG 317 (394)
T ss_pred ECCEEEEEEEEC-CCCEEEHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf 446479987402-4540221478888874113355420101104531210156378437632300012048999961688
Q ss_pred CCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECCEEEEEEEEEEEEC
Q ss_conf 75555115978999954147779999618955707897699999977817754698499998996999899955319
Q gi|254780263|r 316 GRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~~v~e 392 (392)
++..+|..+|+|++|..+.++++.+...++.+.+.|||...+.++|..|++++.+.||.+|++|+|+|+|.|.++++
T Consensus 318 Grh~~f~~~yrPqfy~rt~dvtG~~~~~~~~~mv~PGd~~~~~~~li~~~a~~~G~~f~~reGG~tvGaG~v~~~~~ 394 (394)
T TIGR00485 318 GRHTPFFSGYRPQFYLRTTDVTGKIELPEGVEMVMPGDNVKLTVELISPVALEEGLRFAIREGGRTVGAGVVSKILE 394 (394)
T ss_pred CCCCHHHHCCCCEEEEEEECEEEEEEECCCCEEEECCCCEEEEEEEEEEEHHCCCCEEEEECCCCEECCHHHHHHCC
T ss_conf 73003342278505788511035775213515761587258999774120002586666413871321106776509
No 18
>KOG0458 consensus
Probab=100.00 E-value=0 Score=555.88 Aligned_cols=376 Identities=27% Similarity=0.415 Sum_probs=326.8
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEEC
Q ss_conf 038827999990468988789999998-----------76444200131--------26868698629206378999821
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYET 68 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~~ 68 (392)
..|+|+|++++||||+|||||+|||+. ++.++....+. +|..++||+||+|++.+..+|++
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEEC
T ss_conf 87661589997023454111023788873686578899999998752875302567743631245436367754689846
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-
Q ss_conf 99089998478730246779877400233145201234433-------2106778888631876023310023335612-
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPK-------PQTREHILLARQIGISSIVVYMNKVDAVDDD- 140 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~-------~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~- 140 (392)
+.+.++|+|+|||+||++|||.|+++||+|+|||||+.|.+ +||+||+.+++.|||.++||+|||||+|+|+
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CCEEEEEECCCCCCCCCHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCH
T ss_conf 86169986078742355234336221566899998775433313487986589999998749525888863010127538
Q ss_pred HHHHHCCCCCCEEE-EEEEEEEE-EECCCCEEEEEEE-----CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf 22110123210011-10145322-1023311467641-----14445652123320344310252222100001100000
Q gi|254780263|r 141 ELLDISEYEIRDLL-KEHKYSDD-TPIIRGSALCALQ-----GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIE 213 (392)
Q Consensus 141 ~~~~~i~~~i~~~l-~~~~~~~~-~pii~~sa~~g~~-----~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~ 213 (392)
+||+++++.+..|| +..+|.+. +.+||+|+++|-+ -+|....||++++||+.|++ +..|.++.++||||.|.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIs 411 (603)
T KOG0458 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTIS 411 (603)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-CCCCCCCCCCCEEEEHH
T ss_conf 89999999899999985285047765695546567762123341355665338808888861-36888766677487830
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEE-
Q ss_conf 0013554454301487424534896799950687432125412100121144321001366641124543220211773-
Q gi|254780263|r 214 GSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVC- 292 (392)
Q Consensus 214 ~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~- 292 (392)
++|..++.|..++|+|+||.++.||+++++|+.. ...|++|..+.++...|.|||.|.+.|.+++..+++.|+++|
T Consensus 412 di~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e---~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~ 488 (603)
T KOG0458 412 DIYPLPSSGVSISGKIESGYIQPGQKLYIMTSRE---DATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADS 488 (603)
T ss_pred HEEECCCCEEEEEEEEECCCCCCCCEEEEECCCC---EEEEEEEECCCCCCEEEEECCEEEEECCCCCHHHCCCCEEEEC
T ss_conf 0543588706899997214213599899835753---0799855438986215761778998537657645355204522
Q ss_pred CCCCC-CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE-------------ECCCHHHHCCCCEEEEE
Q ss_conf 26777-63000168999710567875555115978999954147779999-------------61895570789769999
Q gi|254780263|r 293 APGSI-QEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRII-------------LSPGSQAVMPGDRVDLE 358 (392)
Q Consensus 293 ~~~~~-~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~-------------~~~~~~~i~~g~~~~v~ 358 (392)
.++.| +.+.+|.|++.||+.. .++..|....+|.|....++++. .+..++++..|+.|.++
T Consensus 489 ~~~~~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ve 563 (603)
T KOG0458 489 GPQFPISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVE 563 (603)
T ss_pred CCCCCCCCEEEEEEEEEEEECC-----CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCHHHCCCCEECCCCEEEEE
T ss_conf 7875432113799998886035-----64557861588823314355543223212357773222255011357424665
Q ss_pred EEECCCEEECCC------CEEEEEECCEEEEEEEEEEEEC
Q ss_conf 997781775469------8499998996999899955319
Q gi|254780263|r 359 VELIYPIAMEPN------QTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 359 l~l~~pi~~e~~------~rfilRd~~~tig~G~I~~v~e 392 (392)
++...|+|++.| +||++|..|.|||+|+|++|..
T Consensus 564 le~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~~ 603 (603)
T KOG0458 564 LETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEIIQ 603 (603)
T ss_pred CCCCCCHHHHHHHHCHHHEEEEEECCCCEEEEEEEEEECC
T ss_conf 0346750054444341331578721674563116886039
No 19
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=0 Score=551.24 Aligned_cols=358 Identities=28% Similarity=0.438 Sum_probs=302.9
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE-----------------
Q ss_conf 421038827999990468988789999998764442001312686869862920637899982-----------------
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE----------------- 67 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~----------------- 67 (392)
+-+++|+.+||+++||||||||||+.+|++. .+|++++|++|||||+++|+.+.
T Consensus 30 e~~~~q~~vNIGtiGHVDHGKTTLvkALTgv---------~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~ 100 (460)
T PTZ00327 30 EVISRQATINIGTIGHVAHGKSTVVKALSGV---------KTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYP 100 (460)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHCC---------CHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCC
T ss_conf 8962588218988746289899999998677---------5010656787587212054330111365677631010146
Q ss_pred ----------------CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCEEEE
Q ss_conf ----------------19908999847873024677987740023314520123443-3210677888863187602331
Q gi|254780263|r 68 ----------------TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGISSIVVY 130 (392)
Q Consensus 68 ----------------~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~iIv~ 130 (392)
+..|+|.|||+|||++|++||++|++++|+|||||||++|+ +|||+||+.+++.+|++++||+
T Consensus 101 s~~~~~~~c~~c~~~~t~~Rh~s~VDcPGH~~l~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~ 180 (460)
T PTZ00327 101 SSKPDNPQCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 180 (460)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEE
T ss_conf 66655544555565431220489986898799999987476337679999986888876468999999997289719999
Q ss_pred ECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 00233356122211012321001110145322102331146764114445652123320344310252222100001100
Q gi|254780263|r 131 MNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLM 210 (392)
Q Consensus 131 iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~ 210 (392)
+||+|++++++..+.. ++++++|+.. +.++.|+||+||..++ +++.|++++++++|.|.|+.++||+|
T Consensus 181 ~nK~DlV~~e~~~~~~-~ei~~~l~~t-~~~~~PIIpvSA~~~~----------nid~L~~~i~~~ip~P~R~~~~~~~m 248 (460)
T PTZ00327 181 QNKIDLIKEVQALDQY-EEIRNFIDGT-IAENAPIIPISAQLKY----------NIDVLLEYICTQIPIPKRDLTSPPRM 248 (460)
T ss_pred ECCCCCCCHHHHHHHH-HHHHHHHCCC-CCCCCCEEECCHHHCC----------CHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 5354455889999999-9999985257-6779998756544505----------87999999997589998888999537
Q ss_pred ECCCCCCCCC--------CCCCEEEEEEECCCCCCCEEEEEECC------C----CCCCEEEECCCCCCCCCCCCCCCHH
Q ss_conf 0000013554--------45430148742453489679995068------7----4321254121001211443210013
Q gi|254780263|r 211 HIEGSCGIEG--------RGTVVTGCIKRGRIKAGSDVEIIGMG------G----KKLKVKCTDVEMFRKKLDEAIAGDN 272 (392)
Q Consensus 211 ~I~~vf~i~g--------~G~Vv~GrV~sG~l~~Gd~i~i~p~~------~----~~~~~kv~si~~~~~~v~~a~aGd~ 272 (392)
+|+++|.+.+ +|+|++|++++|.+++||++.+.|.- + .....+|.++++++.++++|.||+.
T Consensus 249 ~I~rsFdIngpg~~~~~lrGtVvtGti~~G~lkvGDeIEI~PG~~~~~~~~k~~~~pi~t~I~sl~~~~~~l~~a~pGGl 328 (460)
T PTZ00327 249 IVIRSFDVNKPGEDIENLRGGVAGGSILQGVLKVGDEVEIRPGIVSKDSGGKFTCSPIRTRIVSLKAEQNELQYAVPGGL 328 (460)
T ss_pred EEEEEECCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEECCCEEEEECCCEEEEEEEEEEEEEEEECCCCHHHCCCCCE
T ss_conf 48746715789866567654599889988179369989982675324158659999999999988725852421256753
Q ss_pred HHHH--H-CCCCCCEEECHHEEECCCCCCC-CEEEEEEEEEEECCCCCCCCCCCCCC---------EEEEEECCEEEEEE
Q ss_conf 6664--1-1245432202117732677763-00016899971056787555511597---------89999541477799
Q gi|254780263|r 273 VGLL--L-RGVNRADVPRGRVVCAPGSIQE-YSRFRASVYILTASEGGRTTGFMDNY---------RPQFFMDTADVTGR 339 (392)
Q Consensus 273 v~l~--L-kgi~~~di~rGdvl~~~~~~~~-~~~f~A~i~il~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~~ 339 (392)
+++. | .++.+.|..+|+|++.|+++++ ...|++++++|....+.+..++..++ ..++.++++...++
T Consensus 329 igiGT~Ldp~ltr~D~l~GqVlgkPGslppv~~~~~~e~~lL~k~vG~~~~~~~~~~k~~~~~~~e~l~~~igt~~t~g~ 408 (460)
T PTZ00327 329 IGVGTTIDPTLTRADRLVGQVLGEPGQLPEVYAEIEVQYYLLRRLVGAKSQDGKKAKKVQKLNVNEFLMINIGSTSTGGR 408 (460)
T ss_pred EEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEE
T ss_conf 65322014662113101467786699778752899999999812328746888767664344237359999886466769
Q ss_pred EEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEE----ECCEEEEEEEEEEEE
Q ss_conf 9961895570789769999997781775469849999----899699989995531
Q gi|254780263|r 340 IILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMR----EGGKTVGAGLILEII 391 (392)
Q Consensus 340 i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilR----d~~~tig~G~I~~v~ 391 (392)
+... ++...+.++|.+|+|++.++||++| +.|||||||.|.+-.
T Consensus 409 V~~v--------~~d~~~~v~L~~PIc~~~G~r~AIsRrV~~~wRlIG~G~I~kg~ 456 (460)
T PTZ00327 409 VTNI--------KTDDIAKLELTTPVCTSTGEKIAISRRVDKHWRLIGWGQIRKGV 456 (460)
T ss_pred EEEE--------CCCCEEEEEECCCEECCCCCEEEEEEECCCCCEEEEEEEECCCE
T ss_conf 9986--------89957999937536568899899997418895798289982777
No 20
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=544.75 Aligned_cols=351 Identities=26% Similarity=0.427 Sum_probs=304.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698-62920637899982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEK-LRGITIATAHVSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~-~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
++||+.||||||||||+.+||+..+. -+|++|+|+ +||+|||+||+||..++ ++++|||+|||+.|++||+
T Consensus 1 ~~~at~GHvDHGKT~L~k~LTgi~st------sa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGHe~fl~n~l 74 (627)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIDST------SADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGHEKFLSNAL 74 (627)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCH------HHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf 96873124450479999985064301------231277410257662460420036777771334785597389999986
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 77400233145201234433210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
+|.+.+|+|||||||+||+++||+|||.+++.+|+|++||+|||||.+|++ +.+.+|.+++.+|.+..+..+..+|.+|
T Consensus 75 Ag~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~-~~~~~E~~~~~~l~~~~~~~n~~~~~~S 153 (627)
T TIGR00475 75 AGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEE-EVKRVEEELKEILEEYEFLKNAKIFKTS 153 (627)
T ss_pred HHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 675654010035415778853238999999970896199997346745658-9999999999998764321157479991
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCC
Q ss_conf 46764114445652123320344310252222100001100000001355445430148742453489679995068743
Q gi|254780263|r 170 ALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKK 249 (392)
Q Consensus 170 a~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~ 249 (392)
|.+|--.+ .....+..|+|.++. .|+.++||||+||++|.++|.|||++|++.+|.+++||++++.|.+
T Consensus 154 A~tG~Gi~---~Lk~~L~~L~e~~~~-----~r~~~~~lr~~iD~aF~vKG~GtVvtGt~f~G~VkvGD~~~~~pig--- 222 (627)
T TIGR00475 154 AKTGQGIE---ELKKELKNLLESLDI-----KRDKQKPLRLAIDRAFKVKGAGTVVTGTAFSGEVKVGDKLVLEPIG--- 222 (627)
T ss_pred CCCCCCHH---HHHHHHHHHHHHHHH-----HHCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCEEEEEECC---
T ss_conf 34687778---999999865777655-----4201566651032155870302468755784168988889981058---
Q ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHC-CCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 21254121001211443210013666411-24543220211773267776300016899971056787555511597899
Q gi|254780263|r 250 LKVKCTDVEMFRKKLDEAIAGDNVGLLLR-GVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQ 328 (392)
Q Consensus 250 ~~~kv~si~~~~~~v~~a~aGd~v~l~Lk-gi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~ 328 (392)
..++|++|+.|+.+++.|+|||++||||. +++...+.|||++|...|+.+..+.-.++ .. ..++..+..++
T Consensus 223 ~~~rvk~~~~~~~~~~~A~AG~RiALnL~~~vd~~~~~RGDWll~~~p~~~~~~~v~~~--~a------~v~L~~~~~~~ 294 (627)
T TIGR00475 223 KEVRVKAIQAQNQDVEKAVAGQRIALNLAADVDKEKLKRGDWLLILKPEDPKKRVVVKL--KA------EVPLKELQPYH 294 (627)
T ss_pred CEEEEEEEECCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEE--EE------ECCCCCCCEEE
T ss_conf 36788640205885221002013654123457612256651220278888553278999--85------11235374046
Q ss_pred EEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEE--CCEEEEEEEEEEE
Q ss_conf 9954147779999618955707897699999977817754698499998--9969998999553
Q gi|254780263|r 329 FFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMRE--GGKTVGAGLILEI 390 (392)
Q Consensus 329 ~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd--~~~tig~G~I~~v 390 (392)
+|.+..++++|+.+.++.. ...||..+.++.++.|+.+..++|+++|| ++.++|+..|.++
T Consensus 295 ~~~~~~~~~gk~sll~~~n-aakndrtl~l~~l~~~~~~~~~dkL~~~~~s~~n~laGArVl~~ 357 (627)
T TIGR00475 295 IFHGMSETTGKISLLDKKN-AAKNDRTLALLVLDEPLILAKGDKLVLRDISSKNLLAGARVLEP 357 (627)
T ss_pred EECCCCEEEEEEEEEECCC-CCCCCCEEEEEEECCCCEEECCCEEEEECCCCCCCCCCEEEECC
T ss_conf 4203401420488971776-43234427999845742010486578713663431123178324
No 21
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=536.68 Aligned_cols=369 Identities=27% Similarity=0.379 Sum_probs=308.0
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH-----------HHHHHHH---CC-CC------CCCCHHHHHCCCEEEEEEEEE
Q ss_conf 038827999990468988789999998-----------7644420---01-31------268686986292063789998
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITK-----------YYSEEKK---EY-GD------IDSAPEEKLRGITIATAHVSY 66 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~-----------~~~~~~~---~~-~~------~D~~~~E~~rGiTi~~~~~~~ 66 (392)
+.|+.||+.+|||||+|||||+|||+. .+....+ .. .. +|.+..|||+|||||++|.||
T Consensus 2 ~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF 81 (431)
T COG2895 2 QHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF 81 (431)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 86541368975353686023244655310110577999875213123677875452563325688886496599876410
Q ss_pred ECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHH
Q ss_conf 21990899984787302467798774002331452012344332106778888631876023310023335612-22110
Q gi|254780263|r 67 ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDI 145 (392)
Q Consensus 67 ~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~ 145 (392)
.|++|+|.+.|||||+.|++||++|+|.||.|+|+|||++|+.+|||+|..++.+|||+|++++|||||+++|+ ++|+.
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~ 161 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA 161 (431)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHH
T ss_conf 36663089845996798764222362300379999964221677767789999972876799997410123567899999
Q ss_pred CCCCCCEEEEEEEEEEEEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCC--CCC
Q ss_conf 12321001110145322102331146764114--44565212332034431025222210000110000000135--544
Q gi|254780263|r 146 SEYEIRDLLKEHKYSDDTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGI--EGR 221 (392)
Q Consensus 146 i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i--~g~ 221 (392)
+..+...|..++++... .+||+||+.|-|.. +..|+||.+++||+.|++. +.......+|||||||.+.+. .++
T Consensus 162 I~~dy~~fa~~L~~~~~-~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v-~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 162 IVADYLAFAAQLGLKDV-RFIPISALLGDNVVSKSENMPWYKGPTLLEILETV-EIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHHCCCCCC-EEEECHHHCCCCCCCCCCCCCCCCCCCHHHHHHHC-CCCCCCCCCCEEECEEEECCCCCCCC
T ss_conf 99999999997699852-47743230487533465678864685099997412-23455436650102288617897621
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC-CCCC
Q ss_conf 543014874245348967999506874321254121001211443210013666411245432202117732677-7630
Q gi|254780263|r 222 GTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS-IQEY 300 (392)
Q Consensus 222 G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~-~~~~ 300 (392)
| ..|+|+||++++||++.++|++ ..++|++|..++.++++|.||+.|++.|. +..|++|||+|++.+. |.++
T Consensus 240 G--yaGtiasG~v~~Gd~vvvlPsG---~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~~ 312 (431)
T COG2895 240 G--YAGTIASGSVKVGDEVVVLPSG---KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAVA 312 (431)
T ss_pred C--CCEEEECCCEECCCEEEECCCC---CEEEEEEEECCCCCHHHCCCCCEEEEEEC--CEEECCCCCEEECCCCCCCHH
T ss_conf 0--0304403514059748994589---70357999646871654168842899980--002002573787068985522
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-----------CCCHHHHCCCCEEEEEEEECCCEEECC
Q ss_conf 001689997105678755551159789999541477799996-----------189557078976999999778177546
Q gi|254780263|r 301 SRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-----------SPGSQAVMPGDRVDLEVELIYPIAMEP 369 (392)
Q Consensus 301 ~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-----------~~~~~~i~~g~~~~v~l~l~~pi~~e~ 369 (392)
..|.|.++||..+ ++.+|.++.+-.++..+.+++.- .+..+.+..|+++.|++.+++|+++++
T Consensus 313 ~~f~A~vvWm~~~------pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd~ 386 (431)
T COG2895 313 DAFDADVVWMDEE------PLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFDA 386 (431)
T ss_pred HHCCEEEEEECCC------CCCCCCEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCEEECC
T ss_conf 3216069984377------7788846888841247789861127898435001000001477763599996378555032
Q ss_pred C------CEEEEEE--CCEEEEEEEEEEEE
Q ss_conf 9------8499998--99699989995531
Q gi|254780263|r 370 N------QTFSMRE--GGKTVGAGLILEII 391 (392)
Q Consensus 370 ~------~rfilRd--~~~tig~G~I~~v~ 391 (392)
| ++|+|.| +|.|+|+|+|..-+
T Consensus 387 Y~~N~atG~FIlID~~tn~TVgaGmI~~~l 416 (431)
T COG2895 387 YAENRATGSFILIDRLTNGTVGAGMILASL 416 (431)
T ss_pred CCCCCCCCCEEEEECCCCCCEECEEEECHH
T ss_conf 014755564799975878851020351126
No 22
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=100.00 E-value=0 Score=539.49 Aligned_cols=331 Identities=28% Similarity=0.374 Sum_probs=292.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH-H-HH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCC----EEEEEEECCCCHH
Q ss_conf 999990468988789999998764-4-42----001312686869862920637899982199----0899984787302
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS-E-EK----KEYGDIDSAPEEKLRGITIATAHVSYETDK----RFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~-~-~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~----~~i~iiD~PGH~~ 83 (392)
|||||+|||||||||++.||+..+ . ++ .....||+++.||||||||-++.+...|++ ++|||||||||+|
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGITILaKNTav~y~g~dG~~~INIvDTPGHAD 82 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGITILAKNTAVRYNGKDGVTKINIVDTPGHAD 82 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCC
T ss_conf 18999880699436898888876588641588321354067652100155201300366252889718997781689887
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE---
Q ss_conf 46779877400233145201234433210677888863187602331002333561222110123210011101453---
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS--- 160 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~--- 160 (392)
|.+++.|.++++|+|||||||.||+|||||.+|..|-.+|.++ ||||||+|+ ++.|.+++.+++.++|-.++..
T Consensus 83 FGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkP-IVViNKiDr--p~ARP~eV~d~vFDLF~~LgA~deQ 159 (609)
T TIGR01394 83 FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR--PSARPDEVVDEVFDLFIELGADDEQ 159 (609)
T ss_pred CCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCE-EEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 8865887330240589998578889885347899999568936-999713478--8788378875787888853888001
Q ss_pred EEEECCCCEEEEEEECCC-----CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 221023311467641144-----456521233203443102522221000011000000013554454301487424534
Q gi|254780263|r 161 DDTPIIRGSALCALQGTN-----KELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~~n-----~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~ 235 (392)
.++|+++.||..||+..+ ......++..|+++|..++|.|..+.|+||+|.|...-|.+|.|+++.|||++|+||
T Consensus 160 LDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~~~d~PlQmlvt~ldy~~y~GRI~~GRv~~G~vk 239 (609)
T TIGR01394 160 LDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVK 239 (609)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCEEEEEEEEECEEC
T ss_conf 01256766523672014466577887220178999898640688898887624210001101467766999987505654
Q ss_pred CCCEEEEEECC-CCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEE
Q ss_conf 89679995068-74321254121001----21144321001366641124543220211773267776300016899971
Q gi|254780263|r 236 AGSDVEIIGMG-GKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYIL 310 (392)
Q Consensus 236 ~Gd~i~i~p~~-~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il 310 (392)
+||.+.++... ++....||.++..| |.++++|.|||+||++ |+. |+..|++||+++.|.+.. .+
T Consensus 240 ~Gq~V~~~~~d~g~~~~~ri~~L~~f~GL~R~~~d~A~AGDIvAva--G~~--~~~IGeTiad~~~~~ALP-------~~ 308 (609)
T TIGR01394 240 KGQQVALMKRDDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GLE--DINIGETIADPEAPEALP-------LI 308 (609)
T ss_pred CCCEEEEEECCCCEEEEEEEEEEEECCCCEEEECCCCCCCCEEEEE--CCC--CCCCCCEECCCCCCCCCC-------CC
T ss_conf 6864798724696897777645420157110004557987789990--779--887352113333467887-------11
Q ss_pred ECCCCCCCCCCCCCCEEEEEEC-CEEEEEEEEECCCHHHHCCCCEEEEE
Q ss_conf 0567875555115978999954-14777999961895570789769999
Q gi|254780263|r 311 TASEGGRTTGFMDNYRPQFFMD-TADVTGRIILSPGSQAVMPGDRVDLE 358 (392)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~i~~~~~~~~i~~g~~~~v~ 358 (392)
..++|..++.|..|.+|...-+ ..++|+|.+.+.-.+++..|=.-.|+
T Consensus 309 ~vDEPT~sMtF~vN~SPlAG~EVGk~VTSR~i~dRL~rEL~~NvALrVe 357 (609)
T TIGR01394 309 TVDEPTLSMTFSVNDSPLAGKEVGKFVTSRQIRDRLERELETNVALRVE 357 (609)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHCCCEEEEE
T ss_conf 2588812899875288765532573032441578999986317145640
No 23
>KOG0459 consensus
Probab=100.00 E-value=0 Score=524.86 Aligned_cols=373 Identities=29% Similarity=0.448 Sum_probs=327.3
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHH-----------HHHHHHHHCCCC--------CCCCHHHHHCCCEEEEEEEEEECC
Q ss_conf 3882799999046898878999999-----------876444200131--------268686986292063789998219
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAIT-----------KYYSEEKKEYGD--------IDSAPEEKLRGITIATAHVSYETD 69 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~-----------~~~~~~~~~~~~--------~D~~~~E~~rGiTi~~~~~~~~~~ 69 (392)
+|+|+|++++||||+||||+.|.|+ .++..++++.++ ||++.+||++|.|+..+.++|+++
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCCEEEEEEEEECCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEEC
T ss_conf 77874489999996440126873678986543778999999987613332248999737601210265054125788713
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CCHHHHHHHHHHCCCCCEEEEECCCC--CCCCH
Q ss_conf 9089998478730246779877400233145201234433-------21067788886318760233100233--35612
Q gi|254780263|r 70 KRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPK-------PQTREHILLARQIGISSIVVYMNKVD--AVDDD 140 (392)
Q Consensus 70 ~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~-------~QT~eh~~l~~~lgi~~iIv~iNKmD--~v~~~ 140 (392)
+++++|+|+|||+.|++|||.|++|||.++||++|+.|.+ +|||||+++++++|++++||.||||| .++|.
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred CEEEEEECCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCC
T ss_conf 43677631676555560003661111233201132001121031036630578999886233257999995058866730
Q ss_pred -HHHHHCCCCCCEEEEEEEEEE--EEECCCCEEEEEEECCCCC---CCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf -221101232100111014532--2102331146764114445---6521233203443102522221000011000000
Q gi|254780263|r 141 -ELLDISEYEIRDLLKEHKYSD--DTPIIRGSALCALQGTNKE---LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEG 214 (392)
Q Consensus 141 -~~~~~i~~~i~~~l~~~~~~~--~~pii~~sa~~g~~~~n~~---~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~ 214 (392)
+||+++++++..+|+..+|+. +..++|+|+++|.+..+.. .+||.++.+++.+++ +|.+.|..|+||||||.+
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~ 314 (501)
T KOG0459 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVAN 314 (501)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCCCCCCCCCEEHHC-CCCCCCCCCCCEEEEHHH
T ss_conf 5668999999999999844468998414202464555553446665884217755500202-676554689877855256
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECC
Q ss_conf 01355445430148742453489679995068743212541210012114432100136664112454322021177326
Q gi|254780263|r 215 SCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAP 294 (392)
Q Consensus 215 vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~ 294 (392)
-|+ ..|||+.|+++||+++.||.+.++|. +..++|.+|+....+++.+.|||++-+.|+|++..||+.|.+||++
T Consensus 315 Kyk--dmGTvv~GKvEsGsi~kg~~lvvMPn---k~~veV~~I~~dd~E~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459 315 KYK--DMGTVVGGKVESGSIKKGQQLVVMPN---KTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred HCC--CCCEEEEEEECCCCEECCCEEEECCC---CCCEEEEEEECCCCEEEECCCCCCEEEEECCCCHHHCCCCEEEECC
T ss_conf 205--56527887860260305984797258---8625789875165201001588515899645335424673487068
Q ss_pred CCCCC-CEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEE------EEEEE------CCCHHHHCCCCEEEEEEEE
Q ss_conf 77763-00016899971056787555511597899995414777------99996------1895570789769999997
Q gi|254780263|r 295 GSIQE-YSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVT------GRIIL------SPGSQAVMPGDRVDLEVEL 361 (392)
Q Consensus 295 ~~~~~-~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~i~~------~~~~~~i~~g~~~~v~l~l 361 (392)
++|.. ...|.|+|.+|.. ..-+..||+.++|++++--. |.+.+ ...+++++.++.++++|+.
T Consensus 390 ~n~~~s~~~F~aqi~IlE~-----~sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t 464 (501)
T KOG0459 390 NNPCKSGRTFDAQIVILEH-----KSIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLET 464 (501)
T ss_pred CCCCCCCCEEEEEEEEEEC-----CCEECCCCCEEEEEEEEHHHEEEEEEEEECCCCCCCCCCCCEEECCCCEEEEEEEC
T ss_conf 9855555488777899714-----73341584137653111100411224420011465445787200078689999703
Q ss_pred CCCEEECCC------CEEEEEECCEEEEEEEEEEEEC
Q ss_conf 781775469------8499998996999899955319
Q gi|254780263|r 362 IYPIAMEPN------QTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 362 ~~pi~~e~~------~rfilRd~~~tig~G~I~~v~e 392 (392)
..|+|+|++ +||.|||.|+|||+|+|++++|
T Consensus 465 ~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~k~~~ 501 (501)
T KOG0459 465 EGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred CCCEEHHHCCCCHHHCCEEEECCCCEEEEEEEEEECC
T ss_conf 7847301004654436167712893788878986049
No 24
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=464.40 Aligned_cols=335 Identities=29% Similarity=0.475 Sum_probs=288.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.|+++||||||||||+.++++. .+|+++||++||+|||++|.|+..+++.++|||+|||+||++||+.|++
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLG 72 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCC---------CCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 6997400201430223330255---------3320545661584684205732577773688618984788999985405
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEE
Q ss_conf 02331452012344332106778888631876023310023335612221101232100111014532210233114676
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g 173 (392)
..|+|+|||++++|+++||.||+.++.++|++++|+++||+|++++.++.+ .+++++..+. ..+.++++.|+.+|
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~----~i~~Il~~l~-l~~~~i~~~s~~~g 147 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQ----KIKQILADLS-LANAKIFKTSAKTG 147 (447)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH----HHHHHHHHCC-CCCCCCCCCCCCCC
T ss_conf 774589998475576643688999998619873289996223446788999----9999986502-00032301101257
Q ss_pred EECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEE
Q ss_conf 41144456521233203443102522221000011000000013554454301487424534896799950687432125
Q gi|254780263|r 174 LQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVK 253 (392)
Q Consensus 174 ~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~k 253 (392)
.++..|-+.|.+....++++.++|||++||++|+++|+|||++|++.||++++||++++.|.+ ..++
T Consensus 148 ----------~Gi~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~---k~v~ 214 (447)
T COG3276 148 ----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN---KEVR 214 (447)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEEECCEEEEECCC---CEEE
T ss_conf ----------877999999987520055404786599975579951331799867864358878889990589---7689
Q ss_pred EECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 41210012114432100136664112454322021177326777630001689997105678755551159789999541
Q gi|254780263|r 254 CTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDT 333 (392)
Q Consensus 254 v~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~ 333 (392)
|+|||.|++++++|.||++||++|+|++.+++.|||+|+++++..++++|.+.+.|... -..++..+...++|.+.
T Consensus 215 VRsIq~~d~d~~~a~AG~RVglaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~----~~~~l~~~~~~hi~~g~ 290 (447)
T COG3276 215 VRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPL----FKKTLKQGQPVHIHVGL 290 (447)
T ss_pred EEEEEECCCCHHHCCCCCEEEEECCCCCHHHHHCCCEECCCCCCCCCEEEEEEEEECCC----CCCCCCCCCEEEEEEEC
T ss_conf 98632068645550122514542378877885112275157777762489999871401----03245789538999813
Q ss_pred EEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEECC--EEEEEEEEEE
Q ss_conf 4777999961895570789769999997781775469849999899--6999899955
Q gi|254780263|r 334 ADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMREGG--KTVGAGLILE 389 (392)
Q Consensus 334 ~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd~~--~tig~G~I~~ 389 (392)
.+++|++...+.. +++-+..|+..-.+++++||++. .+.+++.++.
T Consensus 291 ~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl~ 338 (447)
T COG3276 291 RSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVLS 338 (447)
T ss_pred CCCCEEEEECCCC----------CEEEEECCCCCCCCCEEEEECCCCEEEECCCEEEE
T ss_conf 5663576531465----------40455045455657459997266135633645985
No 25
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=0 Score=459.92 Aligned_cols=363 Identities=29% Similarity=0.440 Sum_probs=312.7
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH--HCCCCCCCCHHHHHCCCEEEEEEEEEEC------------------
Q ss_conf 38827999990468988789999998764442--0013126868698629206378999821------------------
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEK--KEYGDIDSAPEEKLRGITIATAHVSYET------------------ 68 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~--~~~~~~D~~~~E~~rGiTi~~~~~~~~~------------------ 68 (392)
.++|++++++||||||||||+|.|+....+.+ ..+..+|..+||-+||.|-+++++-|-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHHHH
T ss_conf 99638999742445786359878984577788840211345416777616532226999972499267605852077776
Q ss_pred -----CCEEEEEEECCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf -----9908999847873024677987740--023314520123443321067788886318760233100233356122
Q gi|254780263|r 69 -----DKRFYSHIDCPGHADYVKNMITGAT--QADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 69 -----~~~~i~iiD~PGH~~f~~~mi~g~~--~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
.++.+.|+||-||+.|++++++|+- ..|+.+|+|+|++|++..|+||+.++.++++| +||+++|+|+++++
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~dd- 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVPDD- 271 (527)
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCHH-
T ss_conf 7665203089998537862789988888732666627999981677303306765656461697-79999952568278-
Q ss_pred HHHHCCCCCCEEEEEEE--------------------EEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 21101232100111014--------------------532-210233114676411444565212332034431025222
Q gi|254780263|r 142 LLDISEYEIRDLLKEHK--------------------YSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 142 ~~~~i~~~i~~~l~~~~--------------------~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
++..+.+++..+|+..+ .+. -+|++.+|+++| .+-.+|+.+-..+|.-
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg-----------~GldlL~e~f~~Lp~r 340 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG-----------EGLDLLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCC-----------CCHHHHHHHHHHCCCC
T ss_conf 89999999999999743465355055326776543323782577999822457-----------5389999999749850
Q ss_pred CC-CCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 21-0000110000000135544543014874245348967999506-874321254121001211443210013666411
Q gi|254780263|r 201 QR-SLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR 278 (392)
Q Consensus 201 ~~-~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk 278 (392)
.+ +..+||+|+|+++|++.|+|+|+.|.|.||.++.||++++.|. .+++..++|+||++|+..+++|.||++++++|+
T Consensus 341 r~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~Al~ 420 (527)
T COG5258 341 RRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIALK 420 (527)
T ss_pred CCCCCCCCEEEEEEEEEEEEEEEEEEEEEEEEEEECCCCEEEECCCCCCCEEEEEEEEEEEEEEEECCCCCCCEEEEEEC
T ss_conf 02477897289987567774257898613776166059879974578995799999999976677032357758999962
Q ss_pred CCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEE
Q ss_conf 24543220211773267776300016899971056787555511597899995414777999961895570789769999
Q gi|254780263|r 279 GVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLE 358 (392)
Q Consensus 279 gi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~ 358 (392)
|+..+.+.||+||+.+..|.+++.|+|++.+|. ||+.++.||.+.+|..+...+.++... ...++++||.+.++
T Consensus 421 gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~-----HPT~I~aGye~v~H~etI~e~~~f~~i-d~~~L~~GD~g~vr 494 (527)
T COG5258 421 GVEKEELERGMVLSAGADPKAVREFDAEVLVLR-----HPTTIRAGYEPVFHYETIREAVYFEEI-DKGFLMPGDRGVVR 494 (527)
T ss_pred CCCHHHHHCCEEECCCCCCHHHHEECCEEEEEE-----CCCEEECCCEEEEEEEEEEHEEEEEEC-CCCCCCCCCCCEEE
T ss_conf 668778734517527999604440112299994-----785775372356675470000589872-54544578864499
Q ss_pred EEEC-CCEEECCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 9977-81775469849999899699989995531
Q gi|254780263|r 359 VELI-YPIAMEPNQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 359 l~l~-~pi~~e~~~rfilRd~~~tig~G~I~~v~ 391 (392)
++|. +|-.++.+|+|++|+ |+|-|.|.|+++.
T Consensus 495 ~~fkyrP~~v~eGQ~fvFRe-GrskgvG~v~~~~ 527 (527)
T COG5258 495 MRFKYRPHHVEEGQKFVFRE-GRSKGVGRVIRVD 527 (527)
T ss_pred EEEEECCHHHCCCCEEEEEC-CCCCCCEEEECCC
T ss_conf 99971711120583899942-7776534774159
No 26
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=0 Score=456.13 Aligned_cols=282 Identities=32% Similarity=0.413 Sum_probs=241.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH----HHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 99999046898878999999876444----20013126868698629206378999821990899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEE----KKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
||+||+|||||||||+++|+...+.- ......||++++||||||||.++...++|++++|||||||||.||..++.
T Consensus 7 NiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~DF~gEVe 86 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE 86 (607)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 48999756889889999999972898644541120147868898759726230489960878997865998543014889
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE---EEEECC
Q ss_conf 77400233145201234433210677888863187602331002333561222110123210011101453---221023
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS---DDTPII 166 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~---~~~pii 166 (392)
|+++++|+|+|||||.+|++|||+.++..|..+|+|. |++|||||+.+. +++.+..++.+++...+.. .++|++
T Consensus 87 R~L~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~-IvvINKiDr~~A--~~~~V~~ei~dlfi~L~a~deqld~Pi~ 163 (607)
T PRK10218 87 RVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLDFPIV 163 (607)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEECCCCCCCC--CHHHHHHHHHHHHHCCCCCHHHHCCHHH
T ss_conf 7897668489999788786245899999999879975-997216676655--3578999999887404985677444355
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECC
Q ss_conf 31146764114445652123320344310252222100001100000001355445430148742453489679995068
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMG 246 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~ 246 (392)
..|+.+||.+.+......++..|+++|.+++|.|..+.++||++.|.++++.+++|++.+|||.+|++++||++.++..+
T Consensus 164 ~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPaP~~d~d~Plq~lV~~ldyD~YvGrI~igRV~sG~ik~Gd~V~~~~~~ 243 (607)
T PRK10218 164 YASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSE 243 (607)
T ss_pred HHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCEECCCCEEEEECCC
T ss_conf 65540650126823433313608899985487989998888410101123567676489999965748589843663279
Q ss_pred CCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEE
Q ss_conf 74321254121001----211443210013666411245432202117732677763000
Q gi|254780263|r 247 GKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSR 302 (392)
Q Consensus 247 ~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~ 302 (392)
++....+|..++.+ +.++++|.|||+|++ +|+ .++..||+||+++.|.+...
T Consensus 244 g~~~~~kV~kl~~~~gl~r~ev~~a~AGDIVAI--aGl--~d~~iGDTl~d~~~p~~Lp~ 299 (607)
T PRK10218 244 GKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNISDTVCDTQNVEALPA 299 (607)
T ss_pred CEEEEEEEEEEEECCCCCCCCCCEECCEEEEEE--ECC--CCCCCCCEECCCCCCCCCCC
T ss_conf 638843467995115777400546524059999--423--35777765215776556766
No 27
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=0 Score=437.27 Aligned_cols=316 Identities=31% Similarity=0.398 Sum_probs=271.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 79999904689887899999987644----42001312686869862920637899982199089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~----~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
-|||||+|||||||||++.|++..+. +......||+.+.||||||||-++.+...|++++|||+|||||+||.+++
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCCCCHH
T ss_conf 30689998448810289999873165445652014403764234434938985152462088389876589867766254
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE---EEEEEC
Q ss_conf 87740023314520123443321067788886318760233100233356122211012321001110145---322102
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY---SDDTPI 165 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~---~~~~pi 165 (392)
.|.++.+|+++|+|||.+|+|||||..+..|..+|+++| |+|||+|+.+ .+.+++..++.+++..++. +.++|+
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp~--Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRPD--ARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCE-EEEECCCCCC--CCHHHHHHHHHHHHHHHCCCHHHCCCEE
T ss_conf 511432334899997555888731444899997499848-9996778999--8878999999999998199745578707
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC
Q ss_conf 33114676411444565212332034431025222210000110000000135544543014874245348967999506
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM 245 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~ 245 (392)
++.|+..|+...+.......+..|+++|.+++|.|..+.++||+|.|...-+.+++|++..|||.+|++++|+.+.+...
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECC
T ss_conf 98541475101586555553168999999758999899988807899852244545226899985272548976899847
Q ss_pred CCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCC
Q ss_conf 874321254121001----2114432100136664112454322021177326777630001689997105678755551
Q gi|254780263|r 246 GGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGRTTGF 321 (392)
Q Consensus 246 ~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~ 321 (392)
.++....+|..+..| |.++++|.|||+|+++ |+ .++..||++|+++.+.+.. .+..++|..++.|
T Consensus 243 ~g~~~~gri~kll~f~GL~R~ei~eA~AGDIvaia--G~--~~~~igdTi~d~~~~~aLp-------~l~iDePTlsMtf 311 (603)
T COG1217 243 DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINIGDTICDPDNPEALP-------ALSVDEPTLSMTF 311 (603)
T ss_pred CCCEEEEEEEEEEECCCEEEEEHHHCCCCCEEEEC--CC--CCCCCCCCCCCCCCCCCCC-------CCCCCCCCEEEEE
T ss_conf 99477557766655054233350012556789982--76--4355434135877766788-------7336898468999
Q ss_pred CCCCEEEEEECCEEEEEEEEE
Q ss_conf 159789999541477799996
Q gi|254780263|r 322 MDNYRPQFFMDTADVTGRIIL 342 (392)
Q Consensus 322 ~~~~~~~~~~~~~~v~~~i~~ 342 (392)
..|.+|........+++|.+.
T Consensus 312 ~vN~SPfAG~EGk~vTSR~i~ 332 (603)
T COG1217 312 SVNDSPFAGKEGKFVTSRQIR 332 (603)
T ss_pred EECCCCCCCCCCCEEEHHHHH
T ss_conf 956887777678565589999
No 28
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=416.30 Aligned_cols=350 Identities=31% Similarity=0.475 Sum_probs=294.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE---C---------------C--
Q ss_conf 8827999990468988789999998764442001312686869862920637899982---1---------------9--
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE---T---------------D-- 69 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~---------------~-- 69 (392)
+|.+||+++||||||||||+.+|++. ++|++.+|.+|||||.++|+... + +
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv---------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~c 78 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV---------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNC 78 (415)
T ss_pred CCCEEEEEEEECCCCHHHHEEHHHCE---------EEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCC
T ss_conf 86147623420146624110033133---------430206887568479840255745757777887662347877778
Q ss_pred ------CEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf ------9089998478730246779877400233145201234-433210677888863187602331002333561222
Q gi|254780263|r 70 ------KRFYSHIDCPGHADYVKNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGISSIVVYMNKVDAVDDDEL 142 (392)
Q Consensus 70 ------~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~ 142 (392)
-|+++|+|+|||+-.+.+|+.|++.+|+|||||+|++ .++|||+||+..+..+|++++|++.||+|+|+.++.
T Consensus 79 g~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 79 GAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred CCCCCEEEEEEEEECCCHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHHH
T ss_conf 99730799999740796699999886023442153899953898989731877887766265339999523011159998
Q ss_pred HHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCC--C
Q ss_conf 11012321001110145322102331146764114445652123320344310252222100001100000001355--4
Q gi|254780263|r 143 LDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIE--G 220 (392)
Q Consensus 143 ~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~--g 220 (392)
.|.. +++++|++-. +.++.|+||+||... ++++.|+++|.+++|.|.++.++|.+|.|.++|.+. |
T Consensus 159 lE~y-~qIk~FvkGt-~Ae~aPIIPiSA~~~----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPG 226 (415)
T COG5257 159 LENY-EQIKEFVKGT-VAENAPIIPISAQHK----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPG 226 (415)
T ss_pred HHHH-HHHHHHHCCC-CCCCCCEEEEHHHHC----------CCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 8879-9999986263-347995443256430----------587999999998689986678999669998640358998
Q ss_pred ------CCCCEEEEEEECCCCCCCEEEEEECC---------CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHC---CCCC
Q ss_conf ------45430148742453489679995068---------74321254121001211443210013666411---2454
Q gi|254780263|r 221 ------RGTVVTGCIKRGRIKAGSDVEIIGMG---------GKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR---GVNR 282 (392)
Q Consensus 221 ------~G~Vv~GrV~sG~l~~Gd~i~i~p~~---------~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk---gi~~ 282 (392)
.|-|+.|.+.+|.+++||++.+.|.- -.+..++|.||+.....+++|.||..+|+..+ .+.+
T Consensus 227 t~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltK 306 (415)
T COG5257 227 TPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTK 306 (415)
T ss_pred CCHHHCCCCEECCEEEEEEEECCCEEEECCCEEEECCCCEEEEEEEEEEEEEEECCEEEEECCCCCEEEEECCCCCCHHH
T ss_conf 99777247432220255368538757854881760399247787138999997377664312688368773344842100
Q ss_pred CEEECHHEEECCCCCCCC-EEEEEEEEEEECCC----CCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEE
Q ss_conf 322021177326777630-00168999710567----8755551159789999541477799996189557078976999
Q gi|254780263|r 283 ADVPRGRVVCAPGSIQEY-SRFRASVYILTASE----GGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDL 357 (392)
Q Consensus 283 ~di~rGdvl~~~~~~~~~-~~f~A~i~il~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v 357 (392)
.|--.|.|+..++.++++ ++|+.+..+|..-. .....+++.|-..++.+|++.+.+.+..-... .+
T Consensus 307 aD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~d---------~~ 377 (415)
T COG5257 307 ADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKKD---------EI 377 (415)
T ss_pred HHHHCCCCCCCCCCCCCCEEEEEEEEEEHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCC---------EE
T ss_conf 123201202589889982478999742046664753201345456798699996233167899974075---------27
Q ss_pred EEEECCCEEECCCCEEEE-E-E--CCEEEEEEEEEE
Q ss_conf 999778177546984999-9-8--996999899955
Q gi|254780263|r 358 EVELIYPIAMEPNQTFSM-R-E--GGKTVGAGLILE 389 (392)
Q Consensus 358 ~l~l~~pi~~e~~~rfil-R-d--~~~tig~G~I~~ 389 (392)
++.|.+|+|.+.++|.++ | - .+|.||+|.|.+
T Consensus 378 ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 378 EVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred EEEECCCEECCCCCEEEEEEEECCEEEEEEEEEEEC
T ss_conf 999635311377877987751015379975789833
No 29
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=100.00 E-value=0 Score=412.02 Aligned_cols=265 Identities=27% Similarity=0.389 Sum_probs=221.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEE------ECCCEEEEEEECCCCHHH
Q ss_conf 9999904689887899999987644---4200131268686986292063789998------219908999847873024
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSY------ETDKRFYSHIDCPGHADY 84 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~------~~~~~~i~iiD~PGH~~f 84 (392)
||.||+|+|||||||.+||++..+. +....-.||+|+.||||||||.+-...+ +.+.|.+||||||||+||
T Consensus 5 NFsIIAHIDHGKSTLADRlle~T~~~s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEKTGAVSEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred CEEEEEEECCCCCHHHHHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 26788462489324889999861745620254305775100000582011563475337533887889964528897212
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 67798774002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.-++-|+++.|.+|||||||+.|++.||-=++++|-...+. ||-+|||+||.+.| .|.++.|+++++. .. ...
T Consensus 85 sYEVSRSLAACEGALL~VDA~QGvEAQT~aN~YlAlE~dLe-IIPViNKIDLP~Ad--pe~v~~eIe~~iG---ld-~~~ 157 (598)
T TIGR01393 85 SYEVSRSLAACEGALLLVDAAQGVEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEEVIG---LD-ASE 157 (598)
T ss_pred CHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCE-EEEEECCCCCCCCC--HHHHHHHHHHHCC---CC-CCC
T ss_conf 73788888871640356141032358889999887561875-84778253688888--5899998765418---89-643
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCC-CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 23311467641144456521233203443102522221000-01100000001355445430148742453489679995
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLD-APFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEII 243 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~-~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~ 243 (392)
.|.+||.+|. +++.+||+|.+.+|+|.-+.+ +||+..|+|+|+++|+|.|+.-||..|++++||+|.++
T Consensus 158 ai~~SAKtG~----------Gi~e~LEaIv~~vPpP~Gd~~DapLkALIFDS~YD~YrGVv~~vRv~~G~ik~gD~I~~M 227 (598)
T TIGR01393 158 AILASAKTGI----------GIEEILEAIVKRVPPPKGDPDDAPLKALIFDSHYDNYRGVVVLVRVFEGTIKKGDKIRFM 227 (598)
T ss_pred CEEEEECCCC----------CHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECEECCCCEEEEE
T ss_conf 0387503678----------889998897101810011388866322788435438650899999952686469889995
Q ss_pred ECCCCCCCEEEECCCCC-C-CCCCCCCCCHHHHHHHCCC-CCCEEECHHEEECCCCC
Q ss_conf 06874321254121001-2-1144321001366641124-54322021177326777
Q gi|254780263|r 244 GMGGKKLKVKCTDVEMF-R-KKLDEAIAGDNVGLLLRGV-NRADVPRGRVVCAPGSI 297 (392)
Q Consensus 244 p~~~~~~~~kv~si~~~-~-~~v~~a~aGd~v~l~Lkgi-~~~di~rGdvl~~~~~~ 297 (392)
..+.++...+|. +... - ...++..||| ||.-..|+ +..|++.||||+..++|
T Consensus 228 stgk~y~V~evG-~~~P~~~~~~~~L~aGe-VGy~~AgIK~v~D~~VGDTiT~~~~P 282 (598)
T TIGR01393 228 STGKEYEVDEVG-VFTPKLEVKTQELSAGE-VGYIIAGIKDVSDVKVGDTITSVKNP 282 (598)
T ss_pred ECCCEEEEEEEE-EECCCCCCCCCCEECCC-EEEEEEEEEECCCEECCCEEECCCCC
T ss_conf 348766675500-34345201466200163-05999865310411205445256787
No 30
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=0 Score=398.43 Aligned_cols=190 Identities=61% Similarity=0.965 Sum_probs=173.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 8279999904689887899999987644420----013126868698629206378999821990899984787302467
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKK----EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~----~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
||+||+++||||||||||+++|++....... ....+|++++||+|||||++++..|+|++++++|||||||+||++
T Consensus 1 p~~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHHH
T ss_conf 93799999605886989999999988663444411200100546665058861441899960881699626896077888
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE-EEEC
Q ss_conf 798774002331452012344332106778888631876023310023335612221101232100111014532-2102
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD-DTPI 165 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~-~~pi 165 (392)
||++|++++|+|||||||.+|+++||+||+.+++.+|+|++||||||||+++++++++.++.++.++|.+.++.. ++|+
T Consensus 81 ~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~~~l~~~g~~~~~~p~ 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 99863511362689985277874789999999998099962799968778987899999999999999842999556829
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 33114676411444565212332034431025222
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
||+||++|+++.+......++.+|+|+|++++|+|
T Consensus 161 ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~iP~P 195 (195)
T cd01884 161 VRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99773875357888755369999999999648998
No 31
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=0 Score=388.67 Aligned_cols=186 Identities=40% Similarity=0.578 Sum_probs=161.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHH-----------HHHHHHCCC--------CCCCCHHHHHCCCEEEEEEEEEECCCEEEE
Q ss_conf 9999904689887899999987-----------644420013--------126868698629206378999821990899
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY-----------YSEEKKEYG--------DIDSAPEEKLRGITIATAHVSYETDKRFYS 74 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~-----------~~~~~~~~~--------~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ 74 (392)
||+++||||||||||+|+|+.. +.+.+.+.+ .||++++||+||+||++++.+|+|++++||
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CCCCHHHHHHHHHHCCCCCEEEEECCCCCC--CCH-HHHH
Q ss_conf 984787302467798774002331452012344-------332106778888631876023310023335--612-2211
Q gi|254780263|r 75 HIDCPGHADYVKNMITGATQADGAILVCAAEDG-------PKPQTREHILLARQIGISSIVVYMNKVDAV--DDD-ELLD 144 (392)
Q Consensus 75 iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G-------~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v--~~~-~~~~ 144 (392)
|||||||+||++||++|++++|+|||||||.+| +++||+||+.+++.+||+++||||||||++ +|+ ++|+
T Consensus 81 iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~y~~~rf~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98789726678899987753166899998576751036677765999999999849974899998753688652599999
Q ss_pred HCCCCCCEEEEEEEEEE-EEECCCCEEEEEEECC--CCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 01232100111014532-2102331146764114--44565212332034431025222
Q gi|254780263|r 145 ISEYEIRDLLKEHKYSD-DTPIIRGSALCALQGT--NKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~~-~~pii~~sa~~g~~~~--n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
+++.++.+++++.++.. ++++||+||+.|.|.. ...++||++++|+++|++. ++|
T Consensus 161 ~i~~~~~~~l~~~g~~~~~~~~IPiSa~~GdNi~~~s~~m~WY~GptLl~~Ld~~-~~p 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSL-EPP 218 (219)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCC-CCC
T ss_conf 9999999999982999566159993367663046678899898781699998478-998
No 32
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=0 Score=388.88 Aligned_cols=185 Identities=32% Similarity=0.395 Sum_probs=159.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH-----------HHHHCCC--------CCCCCHHHHHCCCEEEEEEEEEECCCEEEE
Q ss_conf 999990468988789999998764-----------4420013--------126868698629206378999821990899
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS-----------EEKKEYG--------DIDSAPEEKLRGITIATAHVSYETDKRFYS 74 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~-----------~~~~~~~--------~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~ 74 (392)
+|+++||||||||||+|+|+...+ +.....+ -||++++||+||+||++++.+|++++++|+
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEE
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899981992699
Q ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEE
Q ss_conf 984787302467798774002331452012344332106778888631876023310023335612-2211012321001
Q gi|254780263|r 75 HIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDL 153 (392)
Q Consensus 75 iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~ 153 (392)
|||||||+||++||++|+++||+|+|||||.+|+++||+||+.+++.+|++++||||||||+++|+ ++|++++.++.++
T Consensus 81 iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~~f~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98789628899999999863774799997588872789999999997499839999988576899989999999999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 1101453221023311467641144--4565212332034431025222
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQGTN--KELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~~~n--~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
+++.++. ++++||+||++|.|..+ ..++||++++|+++|++ +|.|
T Consensus 161 l~~~~~~-~~~~IPiSa~~GdNi~~~s~~~~WY~G~tLle~Ld~-~~~~ 207 (208)
T cd04166 161 AAKLGIE-DITFIPISALDGDNVVSRSENMPWYSGPTLLEHLET-VPIA 207 (208)
T ss_pred HHHCCCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHC-CCCC
T ss_conf 9974998-871998126778887869999989888349999847-7789
No 33
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=0 Score=389.24 Aligned_cols=273 Identities=26% Similarity=0.378 Sum_probs=223.3
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH---HHCCCCCCCCHHHHHCCCEEEEEEEEEECC-----CEE
Q ss_conf 961242103882799999046898878999999876444---200131268686986292063789998219-----908
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEE---KKEYGDIDSAPEEKLRGITIATAHVSYETD-----KRF 72 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~---~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-----~~~ 72 (392)
|.+.+++| ||+|++|||||||||.++|+...+.. ......||+++.||||||||.+....+.|. .|.
T Consensus 1 ~~~~~~IR-----Nf~IiAHIDhGKSTLaDrlL~~tg~i~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~ 75 (601)
T PRK05433 1 MMDMKNIR-----NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQ 75 (601)
T ss_pred CCCHHCCC-----EEEEEEECCCCHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEE
T ss_conf 96332045-----5899994378888899999997099774432333145415576558369786799998848996799
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE
Q ss_conf 99984787302467798774002331452012344332106778888631876023310023335612221101232100
Q gi|254780263|r 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRD 152 (392)
Q Consensus 73 i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~ 152 (392)
+||||||||.||..++.|+++.+|+|||||||.+|+++||..++.+|...+++ +|.+|||||+.+.+ .+.+..++.+
T Consensus 76 lNLIDTPGHVDF~~EVsRSL~aceGalLlVDa~qGVqaQT~an~~~A~~~~L~-iIpviNKIDlp~Ad--~e~v~~qi~~ 152 (601)
T PRK05433 76 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIED 152 (601)
T ss_pred EEEECCCCCCCCCEEEEEEHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHH
T ss_conf 99854898566450455603340725999976878560069999999987996-57778614688899--8999999998
Q ss_pred EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEEC
Q ss_conf 11101453221023311467641144456521233203443102522221000011000000013554454301487424
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRG 232 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG 232 (392)
++. .. .-.++.+||.+|+ +++.||+++.+.+|+|..+.++|||..|+++++++++|.++.+||.+|
T Consensus 153 ~ig---l~-~~eil~vSAKtG~----------GV~~lLdaIV~~iP~P~gd~~~PL~ALIFDS~yD~YrGvV~~vRV~~G 218 (601)
T PRK05433 153 IIG---ID-ASDAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDPYRGVVVLVRVVDG 218 (601)
T ss_pred HHC---CC-HHHHHHHHHHCCC----------CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCEEEEEEEECC
T ss_conf 868---96-4777777523388----------879999999974799999987343120123030467880799994088
Q ss_pred CCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEECHHEEECCCC
Q ss_conf 534896799950687432125412100121144321001366641124-5432202117732677
Q gi|254780263|r 233 RIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGV-NRADVPRGRVVCAPGS 296 (392)
Q Consensus 233 ~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi-~~~di~rGdvl~~~~~ 296 (392)
+|++||++.++..+.+....++.-......+++++.|||. |..+.|+ +..|+..||++++.+.
T Consensus 219 ~lk~Gd~I~~~~t~~~~~v~evGi~~p~~~~~~~L~aGeV-GyiiagiK~~~d~~vGDTit~~~~ 282 (601)
T PRK05433 219 TLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEV-GYIIAGIKDVRDARVGDTITLAKN 282 (601)
T ss_pred EECCCCEEEEECCCCEEEEEEEECCCCCCCCCCEECCCCE-EEEEECCCCHHHCCCCCEEECCCC
T ss_conf 7725852564126971672024256898527450137844-799824544432334760554777
No 34
>KOG0463 consensus
Probab=100.00 E-value=0 Score=379.03 Aligned_cols=359 Identities=24% Similarity=0.350 Sum_probs=296.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHCCCEEEEEEE-------------------EEEC---
Q ss_conf 799999046898878999999876444200131--2686869862920637899-------------------9821---
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSAPEEKLRGITIATAHV-------------------SYET--- 68 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~~~E~~rGiTi~~~~~-------------------~~~~--- 68 (392)
+++|++|+||+|||||+|.|++.-.+.++..++ +.++++|.|.|.|-.++.- +++|
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEE
T ss_conf 79899712247722167665304434672277887765223103675445566202002546421588988886431343
Q ss_pred ---CCEEEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH
Q ss_conf ---99089998478730246779877400--2331452012344332106778888631876023310023335612221
Q gi|254780263|r 69 ---DKRFYSHIDCPGHADYVKNMITGATQ--ADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELL 143 (392)
Q Consensus 69 ---~~~~i~iiD~PGH~~f~~~mi~g~~~--~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~ 143 (392)
..+.|+|||..||++|+++++.|+.. .|+.+|.|.|..|+-++|+||+.+|.+|.+|. .|+++|+|+|...-+.
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPV-fvVVTKIDMCPANiLq 292 (641)
T KOG0463 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPV-FVVVTKIDMCPANILQ 292 (641)
T ss_pred CCCCCEEEEEEECCCHHHHHHEEEECCCCCCCCCEEEEECCCCCCEECCHHHHHHHHHHCCCE-EEEEEEECCCCHHHHH
T ss_conf 136422689886154155231144103367887258985166651114477654556426857-9999850558178999
Q ss_pred HHCCCCCCEEEEEEEEE--------------------E--EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC-C
Q ss_conf 10123210011101453--------------------2--21023311467641144456521233203443102522-2
Q gi|254780263|r 144 DISEYEIRDLLKEHKYS--------------------D--DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPT-P 200 (392)
Q Consensus 144 ~~i~~~i~~~l~~~~~~--------------------~--~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~-p 200 (392)
|..+ .+..+|+..+.. . -.||+.+|.++ |+| -.||..+.+.++. -
T Consensus 293 EtmK-ll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVt---G~N--------L~LLkmFLNlls~R~ 360 (641)
T KOG0463 293 ETMK-LLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVT---GTN--------LPLLKMFLNLLSLRR 360 (641)
T ss_pred HHHH-HHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEECCCC---CCC--------HHHHHHHHHHCCCCC
T ss_conf 9999-9999862877650757885156447861358621235407861566---778--------389999986437445
Q ss_pred CCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE-CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 21000011000000013554454301487424534896799950-68743212541210012114432100136664112
Q gi|254780263|r 201 QRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIG-MGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRG 279 (392)
Q Consensus 201 ~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p-~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkg 279 (392)
...++.|..|.|+++|.++|+|||++|+..+|+++.+|.+.+.| +.+.+....|+||+..|-+|..+.+||...|+|+.
T Consensus 361 ~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFALKK 440 (641)
T KOG0463 361 QLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFALKK 440 (641)
T ss_pred CCCCCCCCCEEECCEEECCCCCEEEECCEEEEEEEECCEEEECCCCCCCEEEEEHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf 66657973035222485178522764225521577522788667888876453456645403661487526404367663
Q ss_pred CCCCEEECHHEEECCC-CCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEE
Q ss_conf 4543220211773267-776300016899971056787555511597899995414777999961895570789769999
Q gi|254780263|r 280 VNRADVPRGRVVCAPG-SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLE 358 (392)
Q Consensus 280 i~~~di~rGdvl~~~~-~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~ 358 (392)
+...++++|+|+.+|+ .|.++|.|+|+|.+|. |++.++..|+.++|||+.++++.+... +..+++.||.+.|.
T Consensus 441 Ikr~~vRKGMVmVsp~lkPqAsweFEaEILVLH-----HPTTIsprYQAMvHcGSiRQTAtivsM-~kdcLRTGDka~V~ 514 (641)
T KOG0463 441 IKRKDVRKGMVMVSPKLKPQASWEFEAEILVLH-----HPTTISPRYQAMVHCGSIRQTATIVSM-GKDCLRTGDKAKVQ 514 (641)
T ss_pred CCHHHHHCCEEEECCCCCCCEEEEEEEEEEEEE-----CCCCCCCCHHHEEEECCCCCEEEEEEC-CHHHHHCCCCCEEE
T ss_conf 546665364188668778632357754689984-----687558141320342340012243314-75665337744389
Q ss_pred EEEC-CCEEECCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 9977-81775469849999899699989995531
Q gi|254780263|r 359 VELI-YPIAMEPNQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 359 l~l~-~pi~~e~~~rfilRd~~~tig~G~I~~v~ 391 (392)
|.+. +|.|+.+++|+++|+ |+|.|+|.|.+++
T Consensus 515 FrFIkqPEYir~gqrlVFRE-GRTKAVGti~~~l 547 (641)
T KOG0463 515 FRFIKQPEYIRPGQRLVFRE-GRTKAVGTISSVL 547 (641)
T ss_pred EEEECCCCEECCCCEEEEEC-CCCEEEEEECCCC
T ss_conf 99856832325774688623-6530101340236
No 35
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=352.21 Aligned_cols=265 Identities=26% Similarity=0.353 Sum_probs=200.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 999990468988789999998764------44200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS------EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~------~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
||+++||||||||||+++|+...+ +...+...||++++||+|||||.++...++|+++.|||||||||.||..+
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~~~g~i~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHvDF~~E 89 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILFYTGKIHKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHIDFTGE 89 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHH
T ss_conf 89999179989899999999974998758715478744788299997498776215999889989999809797430999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEE--E-------
Q ss_conf 9877400233145201234433210677888863187602331002333561--2221101232100111--0-------
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLK--E------- 156 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~--~------- 156 (392)
+.++++.+|+||+||||.+|+++||+..+..+...++| +|++|||||+... ++..+.+++.+..... +
T Consensus 90 v~~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp-~il~iNK~DR~~~d~~~~l~~i~~~l~~~~~~~~~p~~~~~ 168 (687)
T PRK13351 90 VERSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIP-RLIFINKMDRVGADLFDVLEDIEEKFGKRPLPLQLPIGSGD 168 (687)
T ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 99999987868999978999868899999999987998-59999797789987667788999984896477860013565
Q ss_pred -------------EEEEEE-------------------------------------------------------------
Q ss_conf -------------145322-------------------------------------------------------------
Q gi|254780263|r 157 -------------HKYSDD------------------------------------------------------------- 162 (392)
Q Consensus 157 -------------~~~~~~------------------------------------------------------------- 162 (392)
..|...
T Consensus 169 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~~~~l~~~l~~~~~ 248 (687)
T PRK13351 169 SFEGVVDLITEKELHFKEGDGGDTVEERPIPEELLEEVASAREKLIDALLEFDDELLELYLEGEEITAEQLRAPFRRGLR 248 (687)
T ss_pred CCCCEEEECCCHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 55641663110122002455685057725628889999999999999998308999999874887889999999999998
Q ss_pred ----EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCC------------------CCCCCCCCEECCCCCCCCC
Q ss_conf ----102331146764114445652123320344310252222------------------1000011000000013554
Q gi|254780263|r 163 ----TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ------------------RSLDAPFLMHIEGSCGIEG 220 (392)
Q Consensus 163 ----~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~------------------~~~~~p~r~~I~~vf~i~g 220 (392)
+|++..|+.. ..++..||+++.+++|.|. .+.++|+...|...+..++
T Consensus 249 ~~~~~Pv~~gsa~~----------~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~p~~a~V~K~~~~~~ 318 (687)
T PRK13351 249 SGHLVPVLFGSALK----------NIGIRPLLDAVVEYLPSPLEGNPPAGSKGTEKKVLVNPDPEKPLLALVFKVQYDPY 318 (687)
T ss_pred HCCCCHHHCCCCCC----------CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCC
T ss_conf 48724123030335----------87858899999870899210345456566664001457999870899999787488
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC
Q ss_conf 4543014874245348967999506874321254121001----211443210013666411245432202117732677
Q gi|254780263|r 221 RGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS 296 (392)
Q Consensus 221 ~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~ 296 (392)
.|.+.++||.||+|+.|+++++...+ ...++..++.. ..++++|.|||++++. |+ +++..|++||+++.
T Consensus 319 ~g~~s~~RV~sGtL~~g~~v~~~~~~---~~e~i~~l~~~~g~~~~~v~~~~aG~Iv~i~--gl--~~~~~g~tl~~~~~ 391 (687)
T PRK13351 319 AGKLTYLRVYQGTLRSGSQLYNGSGR---KREKVGRIFRLQGNKREEVDEAKAGDIVAVA--GL--KELETGDTLHDEEG 391 (687)
T ss_pred CCEEEEEEEECCEECCCCEEEECCCC---CEEEECCEEEECCCCCCCCCEECCCCEEEEE--CC--CCCCCCCEECCCCC
T ss_conf 97589999853454579877634898---3599676146426775414886779889995--87--64756887058998
No 36
>KOG0462 consensus
Probab=100.00 E-value=0 Score=357.78 Aligned_cols=261 Identities=28% Similarity=0.363 Sum_probs=216.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC---EEEEEEECCCCHHHHHH
Q ss_conf 9999904689887899999987644---42001312686869862920637899982199---08999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSYETDK---RFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~---~~i~iiD~PGH~~f~~~ 87 (392)
|++|++|||||||||.++|++..+. .......||+++.||||||||.+..+.+.|.+ |..|+||||||.||..+
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCE
T ss_conf 13799984277016899999982877888755664245445665284787512379997587328875058985555410
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 98774002331452012344332106778888631876023310023335612221101232100111014532210233
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
+.|.++.+|+|||||||.+|+++||.-.+.+|...|+. +|.++||+|+-..+ .+.++.++.+++... ..+.|.
T Consensus 142 VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad--pe~V~~q~~~lF~~~----~~~~i~ 214 (650)
T KOG0462 142 VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD--PERVENQLFELFDIP----PAEVIY 214 (650)
T ss_pred EHEHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCC--HHHHHHHHHHHHCCC----CCCEEE
T ss_conf 00126535715999976768128899999999985974-88865315789889--899999999986689----612488
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCC
Q ss_conf 11467641144456521233203443102522221000011000000013554454301487424534896799950687
Q gi|254780263|r 168 GSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGG 247 (392)
Q Consensus 168 ~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~ 247 (392)
+||.+|++. .++|+++...+|+|....|+||||.+.+.|++.+.|.+..++|..|.+++||++..+....
T Consensus 215 vSAK~G~~v----------~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~ 284 (650)
T KOG0462 215 VSAKTGLNV----------EELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGK 284 (650)
T ss_pred EEECCCCCH----------HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCEEEEEECCC
T ss_conf 870257568----------8899999963799988888516777666335442535899998634462187888861376
Q ss_pred CCCCEEEECCCCC-CC---CCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf 4321254121001-21---144321001366641124543220211773267
Q gi|254780263|r 248 KKLKVKCTDVEMF-RK---KLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295 (392)
Q Consensus 248 ~~~~~kv~si~~~-~~---~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~ 295 (392)
+ ..++..++... .. +++.+++|++++ +.++ ..+.+.||++++..
T Consensus 285 ~-yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~--~~ea~IGdTi~~~~ 332 (650)
T KOG0462 285 S-YEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRN--VKEAQIGDTIAHKS 332 (650)
T ss_pred C-EEEEEEEEECCCCEEEEEECCCCCCEEEE-CCCC--CCCCCCCCEEEECC
T ss_conf 0-67677577635761432321454253675-0446--65450023000003
No 37
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=350.03 Aligned_cols=276 Identities=24% Similarity=0.322 Sum_probs=196.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHHHH
Q ss_conf 999990468988789999998764------44200131268686986292063789998219-90899984787302467
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS------EEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADYVK 86 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~------~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f~~ 86 (392)
||+++||+|||||||+++|+...+ +.......||++++||+|||||.++...+.|+ ++.|||||||||.||..
T Consensus 12 Ni~IiaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~s~~~s~~~~~~~~iNlIDTPGHvDF~~ 91 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDGHRINIIDTPGHVDFTI 91 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCCEEEEEEECCCCCCHHH
T ss_conf 99999169999899999999966984658424389855678288997698873222548826973899991979752489
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEE--EEE------
Q ss_conf 79877400233145201234433210677888863187602331002333561--22211012321001--110------
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDL--LKE------ 156 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~--l~~------ 156 (392)
++.++++.+|+||+||||.+|+++||+..+..|...++|. |++|||||+... +...+.+++.+..- .-+
T Consensus 92 Ev~~aLrv~DgAvlVvDav~GV~~qT~~v~r~a~~~~lp~-i~fINK~Dr~~ad~~~~l~~i~~~l~~~~~~~~~pi~~~ 170 (693)
T PRK00007 92 EVERSLRVLDGAVAVFCAVGGVEPQSETVWRQADKYKVPR-IVFVNKMDRTGADFLRVVEQIKDRLGANPVPIQLPIGAE 170 (693)
T ss_pred HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 9999999858689999889887777999999998759896-999979778999989999999998599768998400247
Q ss_pred EEEEEEEECCCCEEEE------E--------------------------------------EECCCCC------------
Q ss_conf 1453221023311467------6--------------------------------------4114445------------
Q gi|254780263|r 157 HKYSDDTPIIRGSALC------A--------------------------------------LQGTNKE------------ 180 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~------g--------------------------------------~~~~n~~------------ 180 (392)
..|..-+.++...++. | +.+....
T Consensus 171 ~~f~g~vdl~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~r~~l~e~vae~dd~lle~yl~~~~~~~~el~~~lr~~~ 250 (693)
T PRK00007 171 DDFKGVVDLVKMKAIIWDDDDLGTTFEYEEIPADLKDKAEEYREKLVEAAAEADEELMEKYLEGEELTEEEIKAALRKGT 250 (693)
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 76433033000013321333468713770185899999999999999999854999999985578899999999999988
Q ss_pred -----C--------CCCCCCCHHHHHHCCCCCCC--------------------CCCCCCCCEECCCCCCCCCCCCCEEE
Q ss_conf -----6--------52123320344310252222--------------------10000110000000135544543014
Q gi|254780263|r 181 -----L--------GEDSIHALMKAVDTHIPTPQ--------------------RSLDAPFLMHIEGSCGIEGRGTVVTG 227 (392)
Q Consensus 181 -----~--------~~~~~~~Ll~~i~~~~~~p~--------------------~~~~~p~r~~I~~vf~i~g~G~Vv~G 227 (392)
. ...+...||+++.+++|.|. .+.++||...|+.+...++.|.+.++
T Consensus 251 ~~~~~~Pv~~gsa~~~~Gv~~LLd~i~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~~pl~a~vfK~~~dp~~G~ls~~ 330 (693)
T PRK00007 251 LANEIVPVLCGSAFKNKGVQPMLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPFVGKLTFF 330 (693)
T ss_pred HHCCEEEHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEE
T ss_conf 72765661026543487899999999986799212565002068987403564269877714687556774899826889
Q ss_pred EEEECCCCCCCEEEEEECCCCCCCEEEECCCC----CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCC
Q ss_conf 87424534896799950687432125412100----12114432100136664112454322021177326777
Q gi|254780263|r 228 CIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM----FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSI 297 (392)
Q Consensus 228 rV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~----~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~ 297 (392)
||.||+|+.|+.++....+ ...++.+++. .+.++++|.|||++++. |+ ++...||+||+++.+
T Consensus 331 RV~SGtl~~g~~v~n~~~~---~~e~i~~l~~~~g~~~~~v~~~~AGdIvai~--gL--~~~~tgdTl~~~~~~ 397 (693)
T PRK00007 331 RVYSGVLNSGSYVLNSTKG---KKERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTTTGDTLCDPDNP 397 (693)
T ss_pred EECCCCCCCCCEEECCCCC---CCCCCCCEEEEECCCCCEEEEECCCCEEEEE--CC--CCEEECCCCCCCCCC
T ss_conf 8225723689863146543---2113563389855885160077279648985--33--430525531476776
No 38
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=0 Score=348.64 Aligned_cols=265 Identities=26% Similarity=0.362 Sum_probs=193.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH------HH----HHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf 999990468988789999998764------44----20013126868698629206378999821990899984787302
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS------EE----KKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~------~~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~ 83 (392)
|||++||+|||||||+++|+...+ .. ......+|++++||+|||||.++...|+|++++|||||||||.|
T Consensus 12 niaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPGh~D 91 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHED 91 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79999378989899999999746752448466314678864678858899759648615177867898999990989467
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCE---------
Q ss_conf 4677987740023314520123443321067788886318760233100233356--12221101232100---------
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD--DDELLDISEYEIRD--------- 152 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~--~~~~~~~i~~~i~~--------- 152 (392)
|..++.++++.+|+||+||||.+|+++||+..+..|+..++| .+++|||||+-. +.+..+.+++.+..
T Consensus 92 F~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP-~i~FINKmDR~~ad~~~~l~ei~~~lg~~~~p~~~Pi 170 (526)
T PRK00741 92 FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLELLDEIEEVLGIACAPITWPI 170 (526)
T ss_pred HHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 789999999873759999977755233368999998863998-8999965676789878988778887478736888303
Q ss_pred -----------EEEEE--EEE-------------------------------------------------------EEEE
Q ss_conf -----------11101--453-------------------------------------------------------2210
Q gi|254780263|r 153 -----------LLKEH--KYS-------------------------------------------------------DDTP 164 (392)
Q Consensus 153 -----------~l~~~--~~~-------------------------------------------------------~~~p 164 (392)
++... -|. .-.|
T Consensus 171 g~g~~F~GvvDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~el~~~~~~~~d~~~~~~G~l~P 250 (526)
T PRK00741 171 GMGKRFKGVYDLYNDEVELYQPGHGHTIQEFEIIKGLDNPELDEALGEDLAEQLREELELVQGASNEFDLEAFLAGELTP 250 (526)
T ss_pred CCCCCEEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEE
T ss_conf 67886037888013879980367788404660587787789998753899997553577773155510689997398028
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC---------CCCCCCCEECCCCC--CC-CCCCCCEEEEEEEC
Q ss_conf 23311467641144456521233203443102522221---------00001100000001--35-54454301487424
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR---------SLDAPFLMHIEGSC--GI-EGRGTVVTGCIKRG 232 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~---------~~~~p~r~~I~~vf--~i-~g~G~Vv~GrV~sG 232 (392)
+++.||+. ..++..||+++.++.|+|.. +.+.||-..|+.+- -. +++|++.+.||+||
T Consensus 251 Vf~GSA~~----------n~GV~~LLd~iv~~~PsP~~r~~~~~~v~p~~~~fsa~VFKiqanmDP~h~griaf~RV~SG 320 (526)
T PRK00741 251 VFFGSALN----------NFGVQEFLDAFVEWAPAPQPRQTDERVVEPTEEKFSGFVFKIQANMDPKHRDRIAFMRVCSG 320 (526)
T ss_pred EEEEECCC----------CCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEEEEEE
T ss_conf 99620003----------65699999999997799877777765447877774359999984037542543799997511
Q ss_pred CCCCCCEEEEEECCCCCCCEEEECCCC----CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC
Q ss_conf 534896799950687432125412100----1211443210013666411245432202117732677
Q gi|254780263|r 233 RIKAGSDVEIIGMGGKKLKVKCTDVEM----FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS 296 (392)
Q Consensus 233 ~l~~Gd~i~i~p~~~~~~~~kv~si~~----~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~ 296 (392)
+++.|++++....+. ..|+.+++. .++++++|.|||++|+. +..+++.||+||+.++
T Consensus 321 ~l~~g~~v~n~r~gk---~eri~~l~~~~g~~r~~V~ea~AGDIvgl~----~~~~~~tGDTL~~~~~ 381 (526)
T PRK00741 321 KFEKGMKVRHVRTGK---DVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTEGEK 381 (526)
T ss_pred EECCCCEEEECCCCC---EEEHHHHHHHHCCCCEEEEEECCCCEEEEC----CCCCCCCCCEECCCCC
T ss_conf 885799898525795---366326778744352351387699899971----6663003755206885
No 39
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=349.29 Aligned_cols=261 Identities=27% Similarity=0.419 Sum_probs=197.1
Q ss_pred EECCCCCHHHHHHHHHHHHHH------HHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 904689887899999987644------42001312686869862920637899982199089998478730246779877
Q gi|254780263|r 18 IGHVDHGKTTLTAAITKYYSE------EKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 18 iGhvd~GKSTL~~~L~~~~~~------~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
+||||||||||+++|+...+. ...+...||++++||+|||||.++...|.|+++.|||||||||.||..++.++
T Consensus 1 iaHvd~GKTTL~e~lL~~sg~i~~~G~v~~g~t~~D~~~~E~eRgITI~ss~~s~~~~~~~iNlIDTPGHvDF~~EV~~a 80 (670)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISIQSAATTCEWKGHKINIIDTPGHVDFTGEVERA 80 (670)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 98998888899999999659987576143897146780999973997322138898899899999297975148999999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEE--E-----------
Q ss_conf 400233145201234433210677888863187602331002333561--2221101232100111--0-----------
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLK--E----------- 156 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~--~----------- 156 (392)
++.+|+||+||||.+|+++||+..+..|...++| .|++|||||+... ++..+.+++.+..-.. +
T Consensus 81 Lrv~DgAvlvVDaveGV~~qT~~v~r~a~~~~lp-~ilvINKiDr~~a~~~~~l~~i~~~l~~~~~~~~~Pi~~~~~f~g 159 (670)
T PRK12740 81 LRVLDGAVVVVCAVGGVEVQTETVWRYAEEYGVP-RIAFVNKLDRAGADFRRVLAQLQEALGAPVVPLQLPIGEGDDFKG 159 (670)
T ss_pred HHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCEEE
T ss_conf 9986868999978999737899999999987999-699997978999998999999999848983579855047884457
Q ss_pred ---------EEEEEE---------------------------------------------------------------EE
Q ss_conf ---------145322---------------------------------------------------------------10
Q gi|254780263|r 157 ---------HKYSDD---------------------------------------------------------------TP 164 (392)
Q Consensus 157 ---------~~~~~~---------------------------------------------------------------~p 164 (392)
+.|..+ +|
T Consensus 160 ~iDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lle~i~e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~P 239 (670)
T PRK12740 160 VVDLLSMKAYRYDDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEEPSEEEIKAGLRKGTRAGSIVP 239 (670)
T ss_pred EEECCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 85220356899827899437723878899999999999999987425999999876799999999999999997097578
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC------------------CCCCCCCCCEECCCCCCCCCCCCCEE
Q ss_conf 233114676411444565212332034431025222------------------21000011000000013554454301
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP------------------QRSLDAPFLMHIEGSCGIEGRGTVVT 226 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p------------------~~~~~~p~r~~I~~vf~i~g~G~Vv~ 226 (392)
++..||.. ..++..||+++.+++|.| ..+.++||...|..++..++.|.+.+
T Consensus 240 v~~gSa~~----------~~Gv~~LLd~I~~~lPsP~e~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~i~~ 309 (670)
T PRK12740 240 VFCGSALK----------NKGVQRLLDAVVDYLPSPTEVPPRLGTDGEDEEPVLAPDPDGPLSALVFKTMDDPFVGKLSL 309 (670)
T ss_pred EEECCCCC----------CCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 98625435----------77889999999987899254254114477776321457999982899998478588974899
Q ss_pred EEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC
Q ss_conf 4874245348967999506874321254121001----211443210013666411245432202117732677
Q gi|254780263|r 227 GCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS 296 (392)
Q Consensus 227 GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~ 296 (392)
+||+||+|+.||++++...+ ...+|.+++.. ..++++|.|||++++. |++ ++..||+||+++.
T Consensus 310 ~RV~sG~L~~g~~v~~~~~~---~~eki~~l~~~~g~~~~~v~~~~aG~Iv~i~--gl~--~~~tgdTL~~~~~ 376 (670)
T PRK12740 310 VRVYSGTLKKGDTLLNSTTG---KKERVGRLYRMHGKQQEEIDEAVAGDIVAVV--KLK--EAATGDTLCDKGD 376 (670)
T ss_pred EEEECCEECCCCEEEECCCC---CEEEEEEEEEECCCCCEEEEEEECCCEEEEE--CCC--CCCCCCEECCCCC
T ss_conf 99836675589989835875---1587123578715762488998059789984--566--6635886107887
No 40
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=100.00 E-value=0 Score=350.61 Aligned_cols=184 Identities=32% Similarity=0.437 Sum_probs=164.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 999990468988789999998764442----0013126868698629206378999821990899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEK----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
||+++||||||||||+++|+...+... .....+|..++||+|||||.+++..|+|++++|||||||||.||+++|+
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 89999068987999999999974876304652168614758888728763345899998998899998998477777898
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE---EEECC
Q ss_conf 774002331452012344332106778888631876023310023335612221101232100111014532---21023
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD---DTPII 166 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~---~~pii 166 (392)
+|++++|+|||||||.+|+++||++|+.++..+|+| +||+|||||+.+. +++++.+++++++...++.. ++|++
T Consensus 84 ~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~-~iv~iNK~D~~~a--~~~~v~~ei~~~~~~~~~~~~~~~~pii 160 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDA--RPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf 776434467898653789758999999999872997-4998856458988--8999999999999863999333588578
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 3114676411444565212332034431025222
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
++||++||.++|....++++..||+++++++|.|
T Consensus 161 ~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP~P 194 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 7256553357788656465999999999658898
No 41
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=0 Score=343.08 Aligned_cols=276 Identities=24% Similarity=0.304 Sum_probs=197.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 999990468988789999998764------44200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS------EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~------~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
||+++||||||||||+++|+...+ +.......||.+++||+|||||.++...+.|+++.|||||||||.||..+
T Consensus 12 Ni~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPGHvDF~~E 91 (693)
T PRK12739 12 NIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPGHVDFTIE 91 (693)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCCCCHHHHH
T ss_conf 99999079989899999999976985657334389756878099987598674552778459989999949697405899
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCE--EEEE------E
Q ss_conf 9877400233145201234433210677888863187602331002333561--2221101232100--1110------1
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRD--LLKE------H 157 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~--~l~~------~ 157 (392)
+.++++.+|+||+||||.+|+++||+..+..|...++| .|++|||||+... +...+.+.+.+.. +.-+ .
T Consensus 92 V~~alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp-~il~iNKiDR~~ad~~~~~~~i~~~l~~~~~~~~~pi~~~~ 170 (693)
T PRK12739 92 VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGADFFRVVEQIKDRLGANAVPIQLPIGAED 170 (693)
T ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99999984879999978988767799999999986989-69999797889999899999999985897799974220365
Q ss_pred EEEEEEECCCCEEE------EEEE--------------------------------------CCCC--------------
Q ss_conf 45322102331146------7641--------------------------------------1444--------------
Q gi|254780263|r 158 KYSDDTPIIRGSAL------CALQ--------------------------------------GTNK-------------- 179 (392)
Q Consensus 158 ~~~~~~pii~~sa~------~g~~--------------------------------------~~n~-------------- 179 (392)
+|..-+.++...++ .|++ +.+.
T Consensus 171 ~f~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~v~e~dd~l~e~~l~~~~~~~~~l~~~l~~~~~ 250 (693)
T PRK12739 171 DFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAETDEELMEKYLEGEEITEEEIKAAIRKATI 250 (693)
T ss_pred CCCCEEEEECCEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 53311431005788850455798337810768899999999999999998652899999855877889999999999998
Q ss_pred ---CC--------CCCCCCCHHHHHHCCCCCCC-------------------CCCCCCCCEECCCCCCCCCCCCCEEEEE
Q ss_conf ---56--------52123320344310252222-------------------1000011000000013554454301487
Q gi|254780263|r 180 ---EL--------GEDSIHALMKAVDTHIPTPQ-------------------RSLDAPFLMHIEGSCGIEGRGTVVTGCI 229 (392)
Q Consensus 180 ---~~--------~~~~~~~Ll~~i~~~~~~p~-------------------~~~~~p~r~~I~~vf~i~g~G~Vv~GrV 229 (392)
.. .......||+++.+++|.|. .+.++||...|..++..++.|.+.++||
T Consensus 251 ~~~~~Pv~~gs~~~~~gv~~Lld~I~~~lPsP~e~~~~~~~~~~~~~~~~~~~~~~~p~~a~v~K~~~d~~~G~ia~~RV 330 (693)
T PRK12739 251 NMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDIPAIKGINPDTGEEVERPASDDEPFAALAFKIMTDPFVGRLTFFRV 330 (693)
T ss_pred HCCCCCCEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEEEECCCCCCEEEEEC
T ss_conf 37600203232003878999999999768991223443344788764235036999883899999888489981789993
Q ss_pred EECCCCCCCEEEEEECCCCCCCEEEECCCC----CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCC
Q ss_conf 424534896799950687432125412100----12114432100136664112454322021177326777
Q gi|254780263|r 230 KRGRIKAGSDVEIIGMGGKKLKVKCTDVEM----FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSI 297 (392)
Q Consensus 230 ~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~----~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~ 297 (392)
.||+|+.|++++.... ....+|..++. ...++++|.||+++++ .|+ +++..||+|++++.+
T Consensus 331 ~sGtl~~g~~v~n~~~---~~~~ki~~l~~~~g~~~~~v~~~~aG~Iv~i--~Gl--~~~~tgdtl~~~~~~ 395 (693)
T PRK12739 331 YSGTLESGSYVLNTTK---GKKERIGRLLQMHANKREEIKEVYAGDIGAA--VGL--KDTTTGDTLCDEKAP 395 (693)
T ss_pred CCCEECCCCEEECCCC---CCEEECCEEEEEECCCCEEEEEECCCCEEEE--ECC--CCCCCCCEECCCCCC
T ss_conf 4771469998964676---4224304047862687415217648976999--644--454137872389876
No 42
>KOG1143 consensus
Probab=100.00 E-value=0 Score=341.83 Aligned_cols=360 Identities=23% Similarity=0.313 Sum_probs=294.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHCCCEEEEEEEEE---------------------ECC
Q ss_conf 799999046898878999999876444200131--268686986292063789998---------------------219
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSAPEEKLRGITIATAHVSY---------------------ETD 69 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~~~E~~rGiTi~~~~~~~---------------------~~~ 69 (392)
+++|++|.+|+|||||+|.|++...+.+..+++ +.+++||.+.|.|-.+++--+ +..
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCHHCCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 99998527656722366554105314788706630110636540576320010100536534300223204599987410
Q ss_pred CEEEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCC
Q ss_conf 9089998478730246779877400--23314520123443321067788886318760233100233356122211012
Q gi|254780263|r 70 KRFYSHIDCPGHADYVKNMITGATQ--ADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISE 147 (392)
Q Consensus 70 ~~~i~iiD~PGH~~f~~~mi~g~~~--~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~ 147 (392)
.+.++|||..||.+|.+++|.|++. +|+|+|||+|..|+..-|+||+.++.+|.+|. .|.|+|||+++.+-.- ...
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPf-FvlvtK~Dl~~~~~~~-~tv 325 (591)
T KOG1143 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPF-FVLVTKMDLVDRQGLK-KTV 325 (591)
T ss_pred CCEEEEEECCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCE-EEEEEEECCCCCHHHH-HHH
T ss_conf 23388765044223130452200367986279999868887654088888999717876-9999840123632178-999
Q ss_pred CCCCEEEEEEEEE---------------------EE-EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC-----
Q ss_conf 3210011101453---------------------22-10233114676411444565212332034431025222-----
Q gi|254780263|r 148 YEIRDLLKEHKYS---------------------DD-TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP----- 200 (392)
Q Consensus 148 ~~i~~~l~~~~~~---------------------~~-~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p----- 200 (392)
.++.++|++.+.. ++ .|++..|.++| + +..|+..+.+.+++.
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG---e--------gl~ll~~fLn~Lsp~~~~~e 394 (591)
T KOG1143 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG---E--------GLRLLRTFLNCLSPAGTAEE 394 (591)
T ss_pred HHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCEEEEEEEECCC---C--------CHHHHHHHHHHCCCCCCHHH
T ss_conf 999988742376326348505078878888753688114899850476---3--------26699999864387677277
Q ss_pred -CCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf -210000110000000135544543014874245348967999506-874321254121001211443210013666411
Q gi|254780263|r 201 -QRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR 278 (392)
Q Consensus 201 -~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lk 278 (392)
.+-...|..|.|++.|+++.+|+|+.|.+.+|.++.|+.+.+.|. ++.+.+.+|-+|+..+..+....|||...+.|.
T Consensus 395 ~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAslsl~ 474 (591)
T KOG1143 395 RIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAASLSLN 474 (591)
T ss_pred HHHHHCCCCEEEHHHEECCCCCCCCCCCEEEECEECCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCCCCEEEECC
T ss_conf 99986676226674705677656503115422323268605750479983467886236416642026327631155226
Q ss_pred CCCCCEEECHHEEECCC-CCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEE
Q ss_conf 24543220211773267-77630001689997105678755551159789999541477799996189557078976999
Q gi|254780263|r 279 GVNRADVPRGRVVCAPG-SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDL 357 (392)
Q Consensus 279 gi~~~di~rGdvl~~~~-~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v 357 (392)
.-|...+++|+||..++ +|+.+..|+|++.+|- |.+.+..|++..+|+|+.++++-+........+.+|++|.|
T Consensus 475 d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLf-----HaT~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~~AvV 549 (591)
T KOG1143 475 DPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLF-----HATYICEGFQATVHIGSVRQTAVITHIDDADCLRTGKWAVV 549 (591)
T ss_pred CCCCCCHHCCEEEEECCCCCCEEEEEEEEEHHHH-----HHHHHEECCEEEEEECCEEEEEEEEEECCCCCCCCCCEEEE
T ss_conf 8874311034189633789945799860002000-----26743022068999743565455541124022467863799
Q ss_pred EEEEC-CCEEECCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 99977-81775469849999899699989995531
Q gi|254780263|r 358 EVELI-YPIAMEPNQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 358 ~l~l~-~pi~~e~~~rfilRd~~~tig~G~I~~v~ 391 (392)
.|.+. +|.++.++.++++|+ |.|.|+|.|++|.
T Consensus 550 ~f~F~~hPEyir~G~~ilfRe-G~tKGiG~Vt~Vf 583 (591)
T KOG1143 550 KFCFAYHPEYIREGSPILFRE-GKTKGIGEVTKVF 583 (591)
T ss_pred EEEECCCCHHCCCCCEEEEEC-CCCCCCCEEEEEE
T ss_conf 999617833306787343305-6446651377888
No 43
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=100.00 E-value=0 Score=347.12 Aligned_cols=169 Identities=35% Similarity=0.532 Sum_probs=142.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC------------------------
Q ss_conf 79999904689887899999987644420013126868698629206378999821------------------------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET------------------------ 68 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~------------------------ 68 (392)
+||+++||||||||||+++|++. ..|+.++|++||+|++++++....
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~---------~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV---------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECE 71 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCC---------CHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEE
T ss_conf 96999988578799999997085---------124407888677603111456666511121223101111012442145
Q ss_pred ---------CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf ---------9908999847873024677987740023314520123443-321067788886318760233100233356
Q gi|254780263|r 69 ---------DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 69 ---------~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
-.|+|+|||||||+||++||++|+++||+|+|||||++|+ ++||+||+.+++.+|++++||||||||+++
T Consensus 72 ~~~~~~~~~~~r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~ 151 (203)
T cd01888 72 CPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred ECCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 31456543112479998689879999999976643476689864366775077999999999849986367750777788
Q ss_pred CHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 1222110123210011101453221023311467641144456521233203443102522221
Q gi|254780263|r 139 DDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 139 ~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
+++..+ ..++++++++...+ .+.|+||+||++|. +++.|+++|.+.+|+|+|
T Consensus 152 ~~~~~~-~~~ei~~~l~~~~~-~~~~iIPiSA~~G~----------NI~~ll~~i~~~ip~P~~ 203 (203)
T cd01888 152 EEQALE-NYEQIKKFVKGTIA-ENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred HHHHHH-HHHHHHHHHCCCCC-CCCEEEEEECCCCC----------CHHHHHHHHHHHCCCCCC
T ss_conf 678999-99999998552168-99859991478897----------999999999867829999
No 44
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=334.87 Aligned_cols=276 Identities=26% Similarity=0.362 Sum_probs=199.0
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHH------HHCCCCCCCCHHHHHCCCEEEEEEEEEECCC-EEEEEEECCCCHH
Q ss_conf 82799999046898878999999876444------2001312686869862920637899982199-0899984787302
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEE------KKEYGDIDSAPEEKLRGITIATAHVSYETDK-RFYSHIDCPGHAD 83 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~------~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~iiD~PGH~~ 83 (392)
...||+++||+|||||||+++|+.+.+.. ..+.+.||++++||+|||||.++.+.+.|++ ++|||||||||.|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCC
T ss_conf 54079999604788077889999875975778556678654788788986697786405689970865899957997353
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCCE---------
Q ss_conf 467798774002331452012344332106778888631876023310023335612--221101232100---------
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD--ELLDISEYEIRD--------- 152 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~--~~~~~i~~~i~~--------- 152 (392)
|+.++.|++..+|+|++||||.+|+++||+..+..|...++|+ |++|||||+...+ ...+.+...+..
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~-i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pI 167 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPR-ILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPI 167 (697)
T ss_pred CHHHHHHHHHHHCCEEEEEECCCCEEECHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 4778799888616509999887883003799999986559975-999978433556733509999998679832232111
Q ss_pred -----------EEE--EEEEEE--EEEC--CCCEEEEE------------------------EECCC-------------
Q ss_conf -----------111--014532--2102--33114676------------------------41144-------------
Q gi|254780263|r 153 -----------LLK--EHKYSD--DTPI--IRGSALCA------------------------LQGTN------------- 178 (392)
Q Consensus 153 -----------~l~--~~~~~~--~~pi--i~~sa~~g------------------------~~~~n------------- 178 (392)
++. ...|.. .... +|.+ ..+ +++..
T Consensus 168 g~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~-~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 168 GAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPAD-LKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred CCCCCCCCEEEHHHCCEEEECCCCCCCEEECCHH-HHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 5730047636711067179757752431558778-876789999999998861579999998668876479999999876
Q ss_pred -------CC-----CCCCCCCCHHHHHHCCCCCCCC--------------------CCCCCCCEECCCCCCCCCCCCCEE
Q ss_conf -------45-----6521233203443102522221--------------------000011000000013554454301
Q gi|254780263|r 179 -------KE-----LGEDSIHALMKAVDTHIPTPQR--------------------SLDAPFLMHIEGSCGIEGRGTVVT 226 (392)
Q Consensus 179 -------~~-----~~~~~~~~Ll~~i~~~~~~p~~--------------------~~~~p~r~~I~~vf~i~g~G~Vv~ 226 (392)
+. ......+.||+++..++|.|.. +.++||.+.+..+...+++|.+.+
T Consensus 247 ~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~ 326 (697)
T COG0480 247 TIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTF 326 (697)
T ss_pred HHCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEEEECCCCCEEEE
T ss_conf 53266256775010257757999999998789956645444767753230000468888865999999686487875999
Q ss_pred EEEEECCCCCCCEEEEEECCCCCCCEEEECCCC----CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf 487424534896799950687432125412100----121144321001366641124543220211773267
Q gi|254780263|r 227 GCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM----FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295 (392)
Q Consensus 227 GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~----~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~ 295 (392)
+||+||+|+.|++++....+. +.++..|.. .+.+++++.|||++++. ..++...||++|+.+
T Consensus 327 ~RvysGtl~~G~~v~n~~~~~---~erv~~l~~~~~~~~~~v~~~~AG~I~a~~----Gl~~~~tGdTl~~~~ 392 (697)
T COG0480 327 VRVYSGTLKSGSEVLNSTKGK---KERVGRLLLMHGNEREEVDEVPAGDIVALV----GLKDATTGDTLCDEN 392 (697)
T ss_pred EEEECCEECCCCEEEECCCCC---CEEEEEEEECCCCCEEECCCCCCCCEEEEE----CCCCCCCCCEEECCC
T ss_conf 998643773798899579985---378778987168950260540576489997----523554078565378
No 45
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=100.00 E-value=0 Score=341.96 Aligned_cols=172 Identities=28% Similarity=0.489 Sum_probs=150.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE--------------CCCEEEEEEEC
Q ss_conf 7999990468988789999998764442001312686869862920637899982--------------19908999847
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE--------------TDKRFYSHIDC 78 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~--------------~~~~~i~iiD~ 78 (392)
+||+++||||||||||+++|++..+. ..+|++++||+|||||+++++.|. +++++||||||
T Consensus 1 ~NV~iiGHVDhGKTTL~~~L~~~~~~-----~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDt 75 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAST-----AAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDC 75 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCC-----HHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 98999976178999999999833350-----1221358899779716710013785144221123234677458999877
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH---HHHHCCCCCCEEEE
Q ss_conf 873024677987740023314520123443321067788886318760233100233356122---21101232100111
Q gi|254780263|r 79 PGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE---LLDISEYEIRDLLK 155 (392)
Q Consensus 79 PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~---~~~~i~~~i~~~l~ 155 (392)
|||+||++||++|++++|+|+|||||++|+++||+||+.+++.+|+| +|||+||||++++++ ++++++.++..++.
T Consensus 76 PGH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~-~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~l~ 154 (192)
T cd01889 76 PGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98388998888887432652799987888878999999999985899-79999741278815779999999999999986
Q ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 0145322102331146764114445652123320344310252222
Q gi|254780263|r 156 EHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ 201 (392)
Q Consensus 156 ~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~ 201 (392)
..++. +.|++|+||.+|. ++..|.+.+.+.+|.|.
T Consensus 155 ~~~~~-~~~iipiSA~~G~----------gi~eL~~~i~~lip~p~ 189 (192)
T cd01889 155 KTRFK-NSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HCCCC-CCEEEEEECCCCC----------CHHHHHHHHHHHCCCCC
T ss_conf 53899-9849995789884----------98999988876189996
No 46
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=0 Score=335.64 Aligned_cols=276 Identities=27% Similarity=0.423 Sum_probs=194.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHCCCEEEEEEEE----EECCCEEEEEEECCCCHHH
Q ss_conf 79999904689887899999987644----420013126868698629206378999----8219908999847873024
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRGITIATAHVS----YETDKRFYSHIDCPGHADY 84 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~----~~~~~~~~D~~~~E~~rGiTi~~~~~~----~~~~~~~i~iiD~PGH~~f 84 (392)
-||+++||+|||||||+++|+...+. .......||.+++||+|||||.++... +.|.++.|||||||||.||
T Consensus 21 RNI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPGh~DF 100 (730)
T PRK07560 21 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (730)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCCCCHH
T ss_conf 28999937998989999999996499865347986417885999972985752110289875698378999819697305
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC------HHHHH---HCCCCCCEEEE
Q ss_conf 6779877400233145201234433210677888863187602331002333561------22211---01232100111
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD------DELLD---ISEYEIRDLLK 155 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~------~~~~~---~i~~~i~~~l~ 155 (392)
+.++.++++.+|+||+||||.+|+++||+..|..+...++|.+ ++|||||+... ++.++ .+...+..++.
T Consensus 101 ~~Ev~~aLrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~i-lfINKmDR~~~~l~~~~~~~~~~l~~~i~~~~~~i~ 179 (730)
T PRK07560 101 GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPV-LFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIE 179 (730)
T ss_pred HHHHHHHHHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEE-EEEECCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999988587899997898877318999999987799979-998686623555377989998889889999999998
Q ss_pred ---EEEEEE-------EEECCCCEEEEEEECCCC---------------------CC--CC-CCCCCHHHHHHCCCCCCC
Q ss_conf ---014532-------210233114676411444---------------------56--52-123320344310252222
Q gi|254780263|r 156 ---EHKYSD-------DTPIIRGSALCALQGTNK---------------------EL--GE-DSIHALMKAVDTHIPTPQ 201 (392)
Q Consensus 156 ---~~~~~~-------~~pii~~sa~~g~~~~n~---------------------~~--~~-~~~~~Ll~~i~~~~~~p~ 201 (392)
...+.+ +..+...|+..+|...-. .. .+ .....||+++.+++|.|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~pl~~~lld~i~~~lPsP~ 259 (730)
T PRK07560 180 GYAPEEFKEKWKVDVADGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKVKELAEKAPLHEVVLDMVIKHLPNPL 259 (730)
T ss_pred HCCCHHHCCCEEECCCCCCHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCHH
T ss_conf 63715537550524433420544234275234699987187778999998531288876538479999999998689957
Q ss_pred C-------------------------CCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEEC
Q ss_conf 1-------------------------000011000000013554454301487424534896799950687432125412
Q gi|254780263|r 202 R-------------------------SLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTD 256 (392)
Q Consensus 202 ~-------------------------~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~s 256 (392)
. +.++||...|+.+...++.|.+.++||+||+|+.|+++++...+. ..|+..
T Consensus 260 ea~~~ri~~~~~g~~~~~~~~~~~~~d~~~pl~~~vfK~~~dp~~g~is~~RV~sG~L~~g~~v~n~~~~~---~eki~~ 336 (730)
T PRK07560 260 EAQKYRIPKIWKGDLNSEIGKAMLNCDPNGPLVMMVTKIIVDPHAGEVATGRVFSGTIRRGQEVYLVGAKK---KARVQQ 336 (730)
T ss_pred HHCCCCCCCCCCCCCCCHHHEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCC---CEEEEE
T ss_conf 72210356445788765101012204899871457754556698864899998434664798754047774---125215
Q ss_pred CCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCC
Q ss_conf 1001----211443210013666411245432202117732677
Q gi|254780263|r 257 VEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGS 296 (392)
Q Consensus 257 i~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~ 296 (392)
++.. ..++++|.|||++++. ...+...||+||+++.
T Consensus 337 l~~~~g~~~~~v~~~~aGdI~ai~----gL~~~~tGdTl~~~~~ 376 (730)
T PRK07560 337 VGIYMGPEREEVDEIPAGNIAAVT----GLKDARAGETVVSPEY 376 (730)
T ss_pred EEEEECCCEEEEEEECCCCEEEEE----CCCCCCCCCEEECCCC
T ss_conf 787206965781051678789995----6655411665425876
No 47
>KOG0461 consensus
Probab=100.00 E-value=0 Score=335.31 Aligned_cols=342 Identities=26% Similarity=0.454 Sum_probs=269.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC---------CCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821---------990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET---------DKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~---------~~~~i~iiD~PG 80 (392)
.-++|++++||||+|||||..+|....+..+ -|..+..++||||.|++|..+.- +.-.++++||||
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaA-----FDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPG 79 (522)
T KOG0461 5 PSNLNLGILGHVDSGKTTLARALSELGSTAA-----FDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPG 79 (522)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCHHH-----HCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECCC
T ss_conf 7202443574025764899999986314033-----22487531046267412204413572337876641269971797
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH---HHCCCCCCEEEEEE
Q ss_conf 302467798774002331452012344332106778888631876023310023335612221---10123210011101
Q gi|254780263|r 81 HADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELL---DISEYEIRDLLKEH 157 (392)
Q Consensus 81 H~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~---~~i~~~i~~~l~~~ 157 (392)
|...+++.|.|+...|.++||||+.+|.++||.||+.+...+. ++++|++||+|...+.+|. +.....+++-|+..
T Consensus 80 HasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c-~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461 80 HASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC-KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHC-CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 0889999971012001346788610176665214544376644-626999950122653024567899999999778745
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 45322102331146764114445652123320344310252222100001100000001355445430148742453489
Q gi|254780263|r 158 KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAG 237 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~G 237 (392)
+|.++.||+++|+..|+. ....++.|.++|.+.+-.|.|+.++||.|.|+..|.++|.|||.+|+|.+|.++.|
T Consensus 159 ~f~g~~PI~~vsa~~G~~------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln 232 (522)
T KOG0461 159 GFDGNSPIVEVSAADGYF------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLN 232 (522)
T ss_pred CCCCCCCEEEEECCCCCC------CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEEECC
T ss_conf 768888526764378754------06678999999997624777688887589864257862671588634787689628
Q ss_pred CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCCCCCCCEEEEEEEEEEECCCCCC
Q ss_conf 67999506874321254121001211443210013666411245432202117732677763000168999710567875
Q gi|254780263|r 238 SDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQEYSRFRASVYILTASEGGR 317 (392)
Q Consensus 238 d~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~~~~~~~~f~A~i~il~~~~~~~ 317 (392)
+++.+...+ ..-+|+|+|||+.++.+|.+||++|+.+...|..-+.|| ++|.|++++++...-+.+--..- -
T Consensus 233 ~~iE~PAL~---e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~y----f 304 (522)
T KOG0461 233 TEIEFPALN---EKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQY----F 304 (522)
T ss_pred CEEEECCCC---HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCC-CCCCCCCCCEEEEEEEEECCHHH----H
T ss_conf 688504333---144444699875120023215622434001378887375-65797643012155676023088----7
Q ss_pred CCCCCCCCEEEEEECCEEEEEEEEE----------------------CCCHHHHCCCCEEEEEEEECCCEEECCCC
Q ss_conf 5551159789999541477799996----------------------18955707897699999977817754698
Q gi|254780263|r 318 TTGFMDNYRPQFFMDTADVTGRIIL----------------------SPGSQAVMPGDRVDLEVELIYPIAMEPNQ 371 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~v~~~i~~----------------------~~~~~~i~~g~~~~v~l~l~~pi~~e~~~ 371 (392)
...++...+.++.++...++++... +-.|..+.+++...+.+++.+|+...++.
T Consensus 305 r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461 305 RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred HHHHHHHHEEEEEEEHHHHHHEEEEEECCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHEEEEEEECCCCCCCCCC
T ss_conf 6554010048898403421011577513688643110235665264335755508742101344533651374423
No 48
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=330.15 Aligned_cols=262 Identities=27% Similarity=0.386 Sum_probs=213.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-----CCEEEEEEECCCCHHHH
Q ss_conf 9999904689887899999987644---420013126868698629206378999821-----99089998478730246
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSYET-----DKRFYSHIDCPGHADYV 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~iiD~PGH~~f~ 85 (392)
|+.||+|+|||||||.++|++..+. +.-..-.+|+++.||||||||.+-...+.| +.|.+||||||||.||.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 22799984278204889999984676767888875221346766284587327899999479977999972799844367
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
.++-|+++.+.+|||||||+.|++.||.-..++|-..+.. +|-++||+|+...+ .+.++.|+.+.+.- . ....
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~iGi---d-~~da 163 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDIIGI---D-ASDA 163 (603)
T ss_pred EEEHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCC--HHHHHHHHHHHHCC---C-CCCC
T ss_conf 7761337637771899987655378899999999876967-99753225688789--78999999987098---9-5200
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC
Q ss_conf 33114676411444565212332034431025222210000110000000135544543014874245348967999506
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM 245 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~ 245 (392)
+-+||.+|+ +++.+|++|.+.+|+|..+.++||+..|.++|++++.|.|+.-||..|++++||++.++..
T Consensus 164 v~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~t 233 (603)
T COG0481 164 VLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMST 233 (603)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEECEECCCCEEEEEEC
T ss_conf 467634689----------9799999999628989899987515888841234554289999986243447998999746
Q ss_pred CCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCC-CCCEEECHHEEECC
Q ss_conf 87432125412100-121144321001366641124-54322021177326
Q gi|254780263|r 246 GGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGV-NRADVPRGRVVCAP 294 (392)
Q Consensus 246 ~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi-~~~di~rGdvl~~~ 294 (392)
+.+....++. +.. ....+++..||| ||+-..|+ +..|.+.||+++..
T Consensus 234 g~~y~V~evG-vftP~~~~~~~L~aGe-VG~~~a~iK~v~d~~VGDTiT~~ 282 (603)
T COG0481 234 GKEYEVDEVG-IFTPKMVKVDELKAGE-VGYIIAGIKDVRDARVGDTITLA 282 (603)
T ss_pred CCEEEEEEEE-ECCCCCCCCCCCCCCC-EEEEEEEEEECCCCCCCCEEECC
T ss_conf 9768888875-1167633246445773-44899851111568655567506
No 49
>KOG0466 consensus
Probab=100.00 E-value=0 Score=334.68 Aligned_cols=354 Identities=26% Similarity=0.416 Sum_probs=282.8
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEE---ECC-------------
Q ss_conf 2103882799999046898878999999876444200131268686986292063789998---219-------------
Q gi|254780263|r 6 YVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSY---ETD------------- 69 (392)
Q Consensus 6 ~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~---~~~------------- 69 (392)
-+.++.++||++||||.|||||++.++++. .+=+.+.|-||.|||.++|++. .++
T Consensus 32 visRQATiNIGTIGHVAHGKSTvVkAiSGv---------~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~ 102 (466)
T KOG0466 32 VISRQATINIGTIGHVAHGKSTVVKAISGV---------HTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSF 102 (466)
T ss_pred HHHHEEEEEECCEECCCCCCCEEEEEECCC---------EEEEEHHHHHCCEEEEECCCCCEEEECCCCCCCCCCHHHCC
T ss_conf 951201443021110025740244540461---------48871334421526885135445785589889996630204
Q ss_pred ---------------------CEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCCE
Q ss_conf ---------------------9089998478730246779877400233145201234-433210677888863187602
Q gi|254780263|r 70 ---------------------KRFYSHIDCPGHADYVKNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGISSI 127 (392)
Q Consensus 70 ---------------------~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi~~i 127 (392)
-|++.|+|+|||.-.+.+|+.|++.+|+|+|+|++++ .++|||.||+.....+..+++
T Consensus 103 gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhi 182 (466)
T KOG0466 103 GSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHI 182 (466)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCEE
T ss_conf 78999999865689987458999877514796188998874326775433410104888989850667888778631418
Q ss_pred EEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 33100233356122211012321001110145322102331146764114445652123320344310252222100001
Q gi|254780263|r 128 VVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAP 207 (392)
Q Consensus 128 Iv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p 207 (392)
++..||+|++.+++..+.. +++.+|++.. ..+..|++|+||. ..|+++.++|+|.+.+|.|.|+...|
T Consensus 183 iilQNKiDli~e~~A~eq~-e~I~kFi~~t-~ae~aPiiPisAQ----------lkyNId~v~eyivkkIPvPvRdf~s~ 250 (466)
T KOG0466 183 IILQNKIDLIKESQALEQH-EQIQKFIQGT-VAEGAPIIPISAQ----------LKYNIDVVCEYIVKKIPVPVRDFTSP 250 (466)
T ss_pred EEEECHHHHHHHHHHHHHH-HHHHHHHHCC-CCCCCCEEEEHHH----------HCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9982123354377889889-9999997456-5579952101364----------33676799999986189882014789
Q ss_pred CCEECCCCCCC--CC------CCCCEEEEEEECCCCCCCEEEEEEC------C----CCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 10000000135--54------4543014874245348967999506------8----74321254121001211443210
Q gi|254780263|r 208 FLMHIEGSCGI--EG------RGTVVTGCIKRGRIKAGSDVEIIGM------G----GKKLKVKCTDVEMFRKKLDEAIA 269 (392)
Q Consensus 208 ~r~~I~~vf~i--~g------~G~Vv~GrV~sG~l~~Gd~i~i~p~------~----~~~~~~kv~si~~~~~~v~~a~a 269 (392)
.||.|-+.|.+ +| .|.|+.|.+.+|.|++||++.+.|. + .....+++.|++..+.+++.|+|
T Consensus 251 prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvP 330 (466)
T KOG0466 251 PRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQFAVP 330 (466)
T ss_pred CCEEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHCCCEEEECCCEEEECCCCCEEEEEHHHHHHHHHHHHCCCEEECC
T ss_conf 72899986236899841221457420305543242048588862761555589967875678877888753235024258
Q ss_pred CHHHHHHHC---CCCCCEEECHHEEECCCCCC-CCEEEEEEEEEEECCCCCCCCC---------CCCCCEEEEEECCEEE
Q ss_conf 013666411---24543220211773267776-3000168999710567875555---------1159789999541477
Q gi|254780263|r 270 GDNVGLLLR---GVNRADVPRGRVVCAPGSIQ-EYSRFRASVYILTASEGGRTTG---------FMDNYRPQFFMDTADV 336 (392)
Q Consensus 270 Gd~v~l~Lk---gi~~~di~rGdvl~~~~~~~-~~~~f~A~i~il~~~~~~~~~~---------~~~~~~~~~~~~~~~v 336 (392)
|..+|+..+ .+...|-..|.||.+.+.++ ....++...++|....+.++.+ +..+-..++.+|+...
T Consensus 331 GGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sT 410 (466)
T KOG0466 331 GGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGSTST 410 (466)
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEEEEECCCCC
T ss_conf 85564125328540026678888875126776102677761555667762113564332013322668579998535655
Q ss_pred EEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEE--EE--CCEEEEEEEEEE
Q ss_conf 799996189557078976999999778177546984999--98--996999899955
Q gi|254780263|r 337 TGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSM--RE--GGKTVGAGLILE 389 (392)
Q Consensus 337 ~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfil--Rd--~~~tig~G~I~~ 389 (392)
-+|+..... ..+++.|..|+|.+-+++++| |- .+|.||||.|.+
T Consensus 411 G~~v~~vk~---------d~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466 411 GGRVSAVKA---------DMAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred CCEEEEEEC---------CEEEEEECCCHHCCCCHHHHHHHHHHHHEEEECCEEEEC
T ss_conf 736898833---------211368537122011112445566543307730036707
No 50
>KOG0052 consensus
Probab=100.00 E-value=0 Score=326.56 Aligned_cols=325 Identities=31% Similarity=0.464 Sum_probs=268.2
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHH--------HHHHHHHHHCC--------CCCCCCHHHHHCCCEEEEEEEEEECCC
Q ss_conf 10388279999904689887899999--------98764442001--------312686869862920637899982199
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAI--------TKYYSEEKKEY--------GDIDSAPEEKLRGITIATAHVSYETDK 70 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L--------~~~~~~~~~~~--------~~~D~~~~E~~rGiTi~~~~~~~~~~~ 70 (392)
.++|+|+|+.++||||+||||+.+-. ..++.+++.+. -.+|+++.|++||+||+.+...|++..
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052 2 GKEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred CCCCCCCCEEEEEEEEEEEEEEEEEECCCCCCHHHHHHCHHHHHHCCCEEEEEEEECHHHHCCCCCEEEEEEEECCCCEE
T ss_conf 87765302589876322126898630366453013330667776356416655431111211146548999850433106
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-------CCHHHHHHHHHHCCCCCEEEEECCCCCCCC---H
Q ss_conf 089998478730246779877400233145201234433-------210677888863187602331002333561---2
Q gi|254780263|r 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPK-------PQTREHILLARQIGISSIVVYMNKVDAVDD---D 140 (392)
Q Consensus 71 ~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~-------~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~---~ 140 (392)
+.++++|+|||.||.+||++|.++||.|+|.|+|..|.+ +||+||++++..+|++++|+++||||...+ +
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEECCCCCCCEEEEEEEEEEEECCEEEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 77998537788742146876687623058999750353355203351144565553103531456776034336887334
Q ss_pred HHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCC
Q ss_conf 22110123210011101453221023311467641144456521233203443102522221000011000000013554
Q gi|254780263|r 141 ELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEG 220 (392)
Q Consensus 141 ~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~vf~i~g 220 (392)
.++.++..+.+...+..+++... + .+++|++.|
T Consensus 162 ~r~~ei~k~~~~~~~~~g~n~~~--~---------------------------------------------~~~~~~~~g 194 (391)
T KOG0052 162 ARYEEIKKEVSSYIKKIGYNPAA--V---------------------------------------------LQDVYKIGG 194 (391)
T ss_pred CCHHHHEEEEEEEEEECCCCCHH--H---------------------------------------------HCCCCEECC
T ss_conf 63231002210122003557635--5---------------------------------------------216303311
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC--CCC
Q ss_conf 454301487424534896799950687432125412100121144321001366641124543220211773267--776
Q gi|254780263|r 221 RGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG--SIQ 298 (392)
Q Consensus 221 ~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~--~~~ 298 (392)
.| +..|.++.++.+...|.. .+.++.+.+++++.-+++.+|++++++.+|+...++.+|+++.+.. ++.
T Consensus 195 ~~------~~t~iie~~~~v~~~~~~---~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~ 265 (391)
T KOG0052 195 IG------VETGISEPGMDVTFAPSG---VTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPV 265 (391)
T ss_pred EE------EECEECCCCCCEECCCCC---CCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCC
T ss_conf 11------100002475420136656---544124588883157777886266454036666652134243233567753
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEEEECCCE
Q ss_conf 30001689997105678755551159789999541477799996-------------18955707897699999977817
Q gi|254780263|r 299 EYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEVELIYPI 365 (392)
Q Consensus 299 ~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l~l~~pi 365 (392)
....|.||+++|+ |+..+..+|.|.+.|++.+++||+.. +..++++++++.+.+...+.+|+
T Consensus 266 ~~~g~t~qviiln-----hpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~ 340 (391)
T KOG0052 266 EAAGFTAQVIILN-----HPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPL 340 (391)
T ss_pred CCCCCCEEEEEEC-----CCCCCCCCCCCCCCCCCCCEEEEECCCCHHEECCCCCEECCCCCCCCCCCCEEEEECCCCCC
T ss_conf 2366402479943-----75544788535123644531566012431001257622137875245776304663157864
Q ss_pred EECCC------CEEEEEECCEEEEEEEEEEEEC
Q ss_conf 75469------8499998996999899955319
Q gi|254780263|r 366 AMEPN------QTFSMREGGKTVGAGLILEIIE 392 (392)
Q Consensus 366 ~~e~~------~rfilRd~~~tig~G~I~~v~e 392 (392)
|+|.+ +||.+||+.+|+|.|.|..+.+
T Consensus 341 ~ve~~~~~~~l~rfav~d~~~tvavgvikav~k 373 (391)
T KOG0052 341 CVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDK 373 (391)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEE
T ss_conf 002544346655432212211235660243241
No 51
>TIGR00484 EF-G translation elongation factor G; InterPro: IPR004540 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF-G is a large, five-domain GTPase that promotes the directional movement of mRNA and tRNAs on the ribosome in a GTP-dependent manner. Unlike other GTPases, but by analogy to the myosin motor, EF-G performs its function of powering translocation in the GDP-bound form; that is, in a kinetically stable ribosome-EF-G(GDP) complex formed by GTP hydrolysis on the ribosome. The complex undergoes an extensive structural rearrangement, in particular affecting the small ribosomal subunit, which leads to mRNA-tRNA movement. Domain 4, which extends from the 'body' of the EF-G molecule much like a lever arm, appears to be essential for the structural transition to take place. In a hypothetical model, GTP hydrolysis induces a conformational change in the G domain of EF-G, which affects the interactions with neighbouring domains within EF-G. The resulting rearrangement of the domains relative to each other generates conformational strain in the ribosome to which EF-G is fixed. Because of structural features of the tRNA-ribosome complex, this conformational strain results in directional tRNA-mRNA movement. The functional parallels between EF-G and motor proteins suggest that EF-G differs from classical G-proteins in that it functions as a force-generating mechanochemical device rather than a conformational switch . Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. Escherichia coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis sp. (strain PCC 6803) has a few proteins more closely related to EF-G than to any other characterised protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005622 intracellular.
Probab=100.00 E-value=0 Score=323.01 Aligned_cols=268 Identities=25% Similarity=0.322 Sum_probs=201.6
Q ss_pred EEEEEEECCCCCHHHHHHHHH------HHHHHHH--HCCCCCCCCHHHHHCCCEEEEEEEEEECCC------EEEEEEEC
Q ss_conf 799999046898878999999------8764442--001312686869862920637899982199------08999847
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAIT------KYYSEEK--KEYGDIDSAPEEKLRGITIATAHVSYETDK------RFYSHIDC 78 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~------~~~~~~~--~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------~~i~iiD~ 78 (392)
-||+|.+|+||||||+++|++ ++.+... .+.+.|||++.||||||||.++.+..+|++ +.+|||||
T Consensus 11 RNiGI~AHIDaGKTT~~ERILFy~g~~HkIgE~~g~dG~a~MDwME~E~ERGITItSAAT~~~Wk~~~~~~~~~~N~IDT 90 (705)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHGKDGAATMDWMEQEKERGITITSAATTVEWKGMAKQYDHRINIIDT 90 (705)
T ss_pred CCCCEEEEECCCCCCCHHEEEECCCCCCCEEECCCCCCCEECCHHHHCCCCCEEEECHHCCHHHHHHHHCCCCEEEEEEC
T ss_conf 55432786338873201010001375010000016788511231230035871421001101021010001403788737
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 87302467798774002331452012344332106778888631876023310023335612221101232100111014
Q gi|254780263|r 79 PGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 79 PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
|||.||+-++.|+++..|+|++|.||..|++|||...+..+..++||+++ +|||||++..+ |..+..+++.-|....
T Consensus 91 PGHVDFT~EVERSlRVLDGAv~V~~a~~GV~pQ~~TVwRQa~~Y~VPRi~-FVNK~Dk~GAn--f~~~~~~~~~rL~~~~ 167 (705)
T TIGR00484 91 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANKYEVPRIV-FVNKMDKTGAN--FLRVVNQLKSRLGANA 167 (705)
T ss_pred CCCEEEEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE-EEECCCCCCCC--HHHHHHHHHHHHCCCC
T ss_conf 89412578852012256456653330268664115677654326886289-97155645787--8899999998746773
Q ss_pred E-------------------------------------------------------------------------------
Q ss_conf 5-------------------------------------------------------------------------------
Q gi|254780263|r 159 Y------------------------------------------------------------------------------- 159 (392)
Q Consensus 159 ~------------------------------------------------------------------------------- 159 (392)
.
T Consensus 168 ~~~qlpiGaE~~f~GviDLv~~ka~~~~~~~~g~~~~~~~iP~~~~~~~~~~~~~l~e~~a~~~~~LM~~yl~G~e~~~~ 247 (705)
T TIGR00484 168 VPIQLPIGAEDKFIGVIDLVEMKAYFFEEGDKGTKIDEKEIPSDLLEQAKELRENLVEAVAELDEELMEKYLEGEELTIE 247 (705)
T ss_pred EEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCEEHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHH
T ss_conf 46641125665631045543015677506776640012226478999999999999998842007889985089653689
Q ss_pred -----------EEE-EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC--------------------CCCCC
Q ss_conf -----------322-1023311467641144456521233203443102522221--------------------00001
Q gi|254780263|r 160 -----------SDD-TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR--------------------SLDAP 207 (392)
Q Consensus 160 -----------~~~-~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~--------------------~~~~p 207 (392)
+.+ +|++..||+. ..++..|||++.+|+|.|.. +.+.|
T Consensus 248 ~ik~~~r~g~l~~~~~pv~~GSafK----------NKGv~~lLDAV~~yLP~P~dv~~~~~~~~~~~~~e~~~~~sd~~~ 317 (705)
T TIGR00484 248 EIKNAIRKGVLNLELIPVLCGSAFK----------NKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTNEEEIELKASDEEP 317 (705)
T ss_pred HHHHHHHCCEEEEEEEEEEECCCCH----------HHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCEEEEECCCCC
T ss_conf 9988875131124688887503300----------025888999999747897431543023556677613675156765
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 10000000135544543014874245348967999506874321254121001-21144321001366641124543220
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGLLLRGVNRADVP 286 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l~Lkgi~~~di~ 286 (392)
|.-.-+.+...+++|...+-||++|.|+.|+.+.....+.+....++.+.+.. ++++++..|||++|+ +..+|..
T Consensus 318 f~~LAFK~~tdpfvG~LTf~RvY~G~l~~G~~v~Ns~~~k~ervgRl~~MHa~~re~I~~~~aGdI~A~----~Glkd~~ 393 (705)
T TIGR00484 318 FVALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKSKKERVGRLVKMHANKREEIKEVRAGDIAAA----IGLKDTT 393 (705)
T ss_pred CEEEEEEECCCCCCCEEEEEEEEEEEECCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE----ECCEECC
T ss_conf 122345640587311278999976151279777602000014432333100377210012135636887----3130025
Q ss_pred CHHEEECCCCC
Q ss_conf 21177326777
Q gi|254780263|r 287 RGRVVCAPGSI 297 (392)
Q Consensus 287 rGdvl~~~~~~ 297 (392)
+||+||+++..
T Consensus 394 TGdTl~d~~~~ 404 (705)
T TIGR00484 394 TGDTLCDEKAD 404 (705)
T ss_pred CCCCCCCCCCC
T ss_conf 67632256420
No 52
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=313.88 Aligned_cols=175 Identities=39% Similarity=0.637 Sum_probs=147.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 9999904689887899999987644420----013126868698629206378999821990899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKK----EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~----~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
||+++||+|||||||+++|++..+.... ....+|..++||+||+||++++..|+|++++|||||||||++|+++|+
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE----------
Q ss_conf 7740023314520123443321067788886318760233100233356122211012321001110145----------
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY---------- 159 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~---------- 159 (392)
+|++.+|+|||||||.+|+++||++|+.+++..++| +||||||||++++++ ++++..++++.|...++
T Consensus 81 ~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p-~iv~iNKiD~~~~~~-~~~~~~ei~~~l~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEED-LEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHH-HHHHHHHHHHHHHHHCCHHHHHHCCCC
T ss_conf 998646856999987989987899999999976998-799998971877562-999999999998753210232110125
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 32210233114676411444565212332034431025222
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
...+|++|+||++|. ++..|++++.+++|+|
T Consensus 159 ~~~~piv~iSA~~G~----------gv~~Lld~i~~~lP~p 189 (189)
T cd00881 159 GLLVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CCCCEEEEEECCCCC----------CHHHHHHHHHHHCCCC
T ss_conf 887759998886786----------9799999999768799
No 53
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=100.00 E-value=2.8e-45 Score=299.43 Aligned_cols=238 Identities=29% Similarity=0.382 Sum_probs=183.0
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 10388279999904689887899999987644420013126868698629206378999821990899984787302467
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
.+++|.+ +.++||||||||||++.|-+. .-...+ .-|||...+....++++..|+|||||||+-|..
T Consensus 113 l~~R~Pv-VtimGHVDHGKTsLLD~iR~t-~V~~~E-----------aGGITQhIGA~~v~~~~~~itFiDTPGHeAFt~ 179 (610)
T PRK12312 113 LEKRPPI-VTIMGHVDHGKTTLLDTIRKT-NVVASE-----------AGGITQHIGAYQVEYQGKKITFIDTPGHEAFTE 179 (610)
T ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHCC-CCCCCC-----------CCCCCCEECEEEEEECCCEEEEECCCCHHHHHH
T ss_conf 6788998-999677257722588998548-641346-----------776644004499986797689972896798999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEEC
Q ss_conf 7987740023314520123443321067788886318760233100233356122211012321001-110145322102
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTPI 165 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~pi 165 (392)
=-.||++.+|.|+|||||++|++|||.|.+.+++..++| ||||+||||+.+.+ .+.++.++.++ +..-.|..++++
T Consensus 180 mR~RGa~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vp-iiVAiNKiDkp~a~--~~~v~~~L~~~g~~~E~~GGdv~~ 256 (610)
T PRK12312 180 MRARGAKVTDIVILVVAADDGVKPQTEEAIDHAKAANVP-IIVFVNKMDKPNAN--PDRIKNELSKYDLVPEEWGGDTPF 256 (610)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCCC--HHHHHHHHHHHCCCHHHHCCCCEE
T ss_conf 997077654579999975789774269999999975998-89985044678898--789999998707667885794459
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 33114676411444565212332034431025--2222100001100000001355445430148742453489679995
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHI--PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEII 243 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~--~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~ 243 (392)
+|+||.+|. +++.||++|.-.. .....+.+.|.+-.|-++...+|.|.+++--|.+|+|++||.+...
T Consensus 257 V~iSAktg~----------GId~LLe~IlL~AE~leLka~~~~~a~G~VIEsk~dkg~G~vatviVq~GtLk~GD~iV~G 326 (610)
T PRK12312 257 VYGSALKNE----------GIDELLDSILLLAEILNLKANPNRLAIGTVIEAKLDKGKGPVATLIVQNGTLKVGDFIVAG 326 (610)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEEC
T ss_conf 990368798----------9999999999999987652278986069999978616876368999835878159989989
Q ss_pred ECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHH
Q ss_conf 06874321254121001-211443210013666
Q gi|254780263|r 244 GMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGL 275 (392)
Q Consensus 244 p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l 275 (392)
+. ..+|+++... ++++++|.|+..|-+
T Consensus 327 ~~-----~GkVRam~d~~g~~lk~A~PS~pV~I 354 (610)
T PRK12312 327 ST-----YGKIRSMEDENGKKLKKALPSTPVKV 354 (610)
T ss_pred CC-----CCCCCEEECCCCCCCCCCCCCCCEEE
T ss_conf 86-----68621577367861434179985798
No 54
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=100.00 E-value=2.8e-45 Score=299.96 Aligned_cols=170 Identities=29% Similarity=0.446 Sum_probs=140.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-----CEEEEEEECCCCHHHH
Q ss_conf 9999904689887899999987644---4200131268686986292063789998219-----9089998478730246
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSYETD-----KRFYSHIDCPGHADYV 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-----~~~i~iiD~PGH~~f~ 85 (392)
||+++||+|||||||+++|+...+. .......+|++++|++|||||+++...+.|. .+.+||||||||.||.
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~dF~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCH
T ss_conf 59999489989899999999985995414573244165176786386687433688841367871489999899864517
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
++|++|++.+|+|||||||.+|+++||++|+.++..+|+| +|+++||||+.+++ ++.+.+++++.+. +. ..++
T Consensus 82 ~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p-~ivviNKiD~~~ad--~~~v~~~i~~~~g---~~-~~~~ 154 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSAD--PERVKQQIEDVLG---LD-PSEA 154 (179)
T ss_pred HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHC---CC-CCCE
T ss_conf 7898899754427899864778737489999999876998-89998655567789--9999999999868---89-7674
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 33114676411444565212332034431025222
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
+|+||.+|. ++..|+++|.+.+|+|
T Consensus 155 v~vSA~~g~----------gv~~Ll~~i~~~ip~p 179 (179)
T cd01890 155 ILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHCCCC
T ss_conf 884378897----------9899999999648898
No 55
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=1.3e-44 Score=295.82 Aligned_cols=250 Identities=28% Similarity=0.326 Sum_probs=185.4
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC----CCEEEEEEECCCCHH
Q ss_conf 0388279999904689887899999987644420013126868698629206378999821----990899984787302
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET----DKRFYSHIDCPGHAD 83 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~----~~~~i~iiD~PGH~~ 83 (392)
.++|.+ +.|+||||||||||++.|-. ..-...+ .-|||..++....++ +++.|||||||||+-
T Consensus 269 ~~RpPV-VTIMGHVDHGKTsLLD~iR~-t~Va~~E-----------aGGITQhIGAy~V~~~~~~~~~~ITFlDTPGHeA 335 (770)
T CHL00189 269 IRRPPI-VTILGHVDHGKTTLLDAIRK-TNIAQKE-----------AGGITQKIGAYEVEVPYKDQNQKIVFLDTPGHEA 335 (770)
T ss_pred CCCCCE-EEEECCCCCCHHHHHHHHHC-CCCCCCC-----------CCCCCCEECEEEEEECCCCCCCEEEEECCCCHHH
T ss_conf 778998-99857725772037888852-8851345-----------6765550352999751578897589955994688
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEE
Q ss_conf 4677987740023314520123443321067788886318760233100233356122211012321001-110145322
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDD 162 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~ 162 (392)
|..=-.||+...|.++|||+|++|++|||.|.+..|++.++| |||||||||..+.+ .+.++.++.++ +..-.|.++
T Consensus 336 Ft~MRaRGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VP-iIVAINKiDkp~an--~~rVk~eL~e~gli~EewGGd 412 (770)
T CHL00189 336 FSSMRSRGANVTDIAILIVAADDGVKPQTIEAINHIQAANVP-IIVAINKIDKENAN--IDRVKQELSKYNLISEKWGGQ 412 (770)
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCHHHCCCC
T ss_conf 999986278666679999965788567279999999876998-89998774589988--578999999869552223795
Q ss_pred EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEE
Q ss_conf 102331146764114445652123320344310252--222100001100000001355445430148742453489679
Q gi|254780263|r 163 TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIP--TPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240 (392)
Q Consensus 163 ~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~--~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i 240 (392)
++++++||.+|. +++.|||+|.-.-. .-..+.+.|.+-.|-++...+|+|.|++--|.+|+|++||.+
T Consensus 413 ~~~V~ISAktg~----------gId~LLE~IlL~AEvlELkAnp~~~A~GvVIES~ldkgrG~VATvLVQ~GTLkvGD~i 482 (770)
T CHL00189 413 TPMIPISALQGT----------NIDKLLEMILLLAEIENLQADPTQLAQGTILEAHLDKTKGPVATLLVQNGTLRIGDII 482 (770)
T ss_pred EEEEEEEECCCC----------CHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEECCCCEE
T ss_conf 599996616798----------8799999999998787523688986149999976516867768999954844039999
Q ss_pred EEEECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHH-HHCCCCCCEEECHHEEE
Q ss_conf 99506874321254121001-211443210013666-41124543220211773
Q gi|254780263|r 241 EIIGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGL-LLRGVNRADVPRGRVVC 292 (392)
Q Consensus 241 ~i~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l-~Lkgi~~~di~rGdvl~ 292 (392)
.... ...||+++..+ ++.+++|.|+..|-+ .|+++. ..||.+.
T Consensus 483 VaG~-----~~GKVRaM~Dd~Gk~vkeA~PS~PVeIlGl~~vP----~AGD~f~ 527 (770)
T CHL00189 483 VAGT-----SLGKIRGMINSAGNKINEAGPSSPVEIWGLSSVP----ATGEYFQ 527 (770)
T ss_pred EECC-----CEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCC----CCCCEEE
T ss_conf 9836-----3447889889999844554899868987787898----7798899
No 56
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-44 Score=294.42 Aligned_cols=273 Identities=25% Similarity=0.363 Sum_probs=197.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHH----------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf 9999904689887899999987----------644420013126868698629206378999821990899984787302
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY----------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~----------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~ 83 (392)
++|||.|.|||||||+..|+-. .++.....++.||++-||+|||+|.++..+|+|+++.+||+|||||+|
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred CEEEEECCCCCCCCHHHHHHHHCCHHHHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCCCCC
T ss_conf 03688568888511889999723034305501222577634227788887568558765787603884886147998654
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 46779877400233145201234433210677888863187602331002333561--2221101232100111014532
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
|.-.+.|-+..+|+|++||||.+|+++||+.-+..|++-++| |+-+|||||+..- =|+.+++++++.-- .+.-
T Consensus 94 FSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~----~~Pi 168 (528)
T COG4108 94 FSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQ----CAPI 168 (528)
T ss_pred CCHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCC----EECC
T ss_conf 323678999864104689860358668899999998505984-69975023656688689999999985775----0355
Q ss_pred EEECCCCEEEE----------------------------EEE--------CCC---------------------------
Q ss_conf 21023311467----------------------------641--------144---------------------------
Q gi|254780263|r 162 DTPIIRGSALC----------------------------ALQ--------GTN--------------------------- 178 (392)
Q Consensus 162 ~~pii~~sa~~----------------------------g~~--------~~n--------------------------- 178 (392)
.+||=..-.+. ++. +.+
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G 248 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAG 248 (528)
T ss_pred CCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
T ss_conf 24456885643223503587998426777654434444578886777762447999999999999741332088988569
Q ss_pred --------CCCCCCCCCCHHHHHHCCCCCCCC-CCC-----------CCCCEECCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf --------456521233203443102522221-000-----------011000000013554454301487424534896
Q gi|254780263|r 179 --------KELGEDSIHALMKAVDTHIPTPQR-SLD-----------APFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGS 238 (392)
Q Consensus 179 --------~~~~~~~~~~Ll~~i~~~~~~p~~-~~~-----------~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd 238 (392)
.-+..++...+|+++..+-|+|.. ..+ ..|.|-||.-...+.+-++++-||.||.+..|+
T Consensus 249 ~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~r~~~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRV~SGkferGM 328 (528)
T COG4108 249 ELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVCSGKFERGM 328 (528)
T ss_pred CCCCEEEHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 60115703323115889999999963899865446667316887754348999974899433420367863056435886
Q ss_pred EEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf 799950687432125412100-121144321001366641124543220211773267
Q gi|254780263|r 239 DVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295 (392)
Q Consensus 239 ~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~ 295 (392)
++.....++....+....... .|+.+++|+|||+||+. +.-.++.||+++...
T Consensus 329 k~~~~rtgK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhGt~~IGDT~t~Ge 382 (528)
T COG4108 329 KVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGE 382 (528)
T ss_pred EEEEEECCCCEEECCCHHHHHHHHHHHHHCCCCCEEECC----CCCCEEECCEECCCC
T ss_conf 533024487256161076764216657542687767146----787213266631585
No 57
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=100.00 E-value=2.7e-44 Score=293.78 Aligned_cols=178 Identities=49% Similarity=0.751 Sum_probs=147.3
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH
Q ss_conf 8827999990468988789999998764442-----00131268686986292063789998219908999847873024
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEK-----KEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY 84 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~-----~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f 84 (392)
|++.||+++||+|||||||+++|++..+... .....+|+.++||+||+||++++..|+|+++.|+|+|||||.+|
T Consensus 1 ~~~rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~f 80 (185)
T pfam00009 1 KRHRNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVDF 80 (185)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCH
T ss_conf 99678999938994499999999715487654643100333365588885782698769999608936899989987143
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCC-EEEEEEEEEE-E
Q ss_conf 6779877400233145201234433210677888863187602331002333561222110123210-0111014532-2
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIR-DLLKEHKYSD-D 162 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~-~~l~~~~~~~-~ 162 (392)
+++|++|++.+|+|+|||||.+|+++||++|+.++..+|+| +|+|+||||+++.+++.+ +..++. .+++...+.. .
T Consensus 81 ~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p-~iv~vNKiD~v~~~~~~~-~~~e~~~~ll~~~~~~~~~ 158 (185)
T pfam00009 81 TKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVP-IIVFINKMDRVDDAELDE-VVEEISRELLEKYGFGGET 158 (185)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCHHHHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf 99999998646564299986768532309999999982898-799997732777676999-9999999988873248998
Q ss_pred EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 1023311467641144456521233203443102522
Q gi|254780263|r 163 TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPT 199 (392)
Q Consensus 163 ~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~ 199 (392)
.|++|+||++|. +++.|+++|..++|.
T Consensus 159 ~pivpiSA~~G~----------gv~~Ll~~i~~~lP~ 185 (185)
T pfam00009 159 IPVIPGSALTGE----------GIDTLLEALDLYLPS 185 (185)
T ss_pred CEEEEEECCCCC----------CHHHHHHHHHHHCCC
T ss_conf 869996789997----------989999999977859
No 58
>KOG0465 consensus
Probab=100.00 E-value=1.3e-44 Score=295.89 Aligned_cols=264 Identities=25% Similarity=0.367 Sum_probs=189.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHH
Q ss_conf 27999990468988789999998764------442001312686869862920637899982199089998478730246
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYS------EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYV 85 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~------~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~ 85 (392)
.-||++++|.|+|||||+.+.+.+.+ ........||+++.||+|||||.++..++.|.+++|||||||||.||+
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred HCCCCEEEEEECCCCEEEHEEEEECCEEEECCCCCCCCEEEEHHHHHHHCCCEEEECEEEEEECCCEEEEECCCCCEEEE
T ss_conf 10031699982698511020013022010023202676046427778653844641215664045206785489721579
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH--HHHHHCCCCCC------------
Q ss_conf 7798774002331452012344332106778888631876023310023335612--22110123210------------
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD--ELLDISEYEIR------------ 151 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~--~~~~~i~~~i~------------ 151 (392)
-++.|++...|+|++|+||..|++.||...+..++.+++|+ |++|||||+...+ ...+.+...+.
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~-i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~ 197 (721)
T KOG0465 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPR-ICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGS 197 (721)
T ss_pred EEEHHHHHHCCCEEEEEECCCCEEHHHHHHHHHHHHCCCCE-EEEEEHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCC
T ss_conf 77200252056728999703651113568988887618975-99986166447974889999986227860226764144
Q ss_pred -------------------------------------------------------------------------EEEEEEE
Q ss_conf -------------------------------------------------------------------------0111014
Q gi|254780263|r 152 -------------------------------------------------------------------------DLLKEHK 158 (392)
Q Consensus 152 -------------------------------------------------------------------------~~l~~~~ 158 (392)
..++...
T Consensus 198 e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~T 277 (721)
T KOG0465 198 ESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRAT 277 (721)
T ss_pred CCCCHHHHHHHHCEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 54431477463225899718987546855698789999999999999998611689999985258999899999999887
Q ss_pred EEEE-EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCC--------------------CC-CCCEECCCCC
Q ss_conf 5322-102331146764114445652123320344310252222100--------------------00-1100000001
Q gi|254780263|r 159 YSDD-TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSL--------------------DA-PFLMHIEGSC 216 (392)
Q Consensus 159 ~~~~-~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~--------------------~~-p~r~~I~~vf 216 (392)
.... .|++..||++ ....++||+++.+++|.|..-. |+ ||.-..+.+-
T Consensus 278 i~r~fvPVl~GSAlK----------NkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle 347 (721)
T KOG0465 278 IKRSFVPVLCGSALK----------NKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLE 347 (721)
T ss_pred HHCCEEEEEECHHHC----------CCCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEE
T ss_conf 515524677532223----------5674158999987679936624510256788866467522788996033577764
Q ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCC-CC---CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEE
Q ss_conf 355445430148742453489679995068743212541210-01---21144321001366641124543220211773
Q gi|254780263|r 217 GIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVE-MF---RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVC 292 (392)
Q Consensus 217 ~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~-~~---~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~ 292 (392)
.-++ |...+-||+||+|+.|+.++....++ ++|+..+. +| .++|++++|||++++ -|+ |+..||+++
T Consensus 348 ~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgK---Kvrv~RL~rmHa~~medV~~v~AG~I~al--fGi---dcasGDTft 418 (721)
T KOG0465 348 EGRF-GQLTYVRVYQGTLSKGDTIYNVRTGK---KVRVGRLVRMHANDMEDVNEVLAGDICAL--FGI---DCASGDTFT 418 (721)
T ss_pred ECCC-CCEEEEEEEEEEECCCCEEEECCCCC---EEEHHHHHHHCCCCCCCCCEEECCCEEEE--ECC---CCCCCCEEC
T ss_conf 1674-52699998621664786787347785---44667787750254452000102766888--523---335687122
Q ss_pred CCC
Q ss_conf 267
Q gi|254780263|r 293 APG 295 (392)
Q Consensus 293 ~~~ 295 (392)
++.
T Consensus 419 d~~ 421 (721)
T KOG0465 419 DKQ 421 (721)
T ss_pred CCC
T ss_conf 676
No 59
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=3.9e-43 Score=286.51 Aligned_cols=251 Identities=29% Similarity=0.355 Sum_probs=186.1
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHH
Q ss_conf 10388279999904689887899999987644420013126868698629206378999821-99089998478730246
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYV 85 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~ 85 (392)
...+|.+ +.++||||||||||++.|-.. .-...+ .-|||..++.-..++ +++.|||||||||+-|+
T Consensus 337 ~~~r~pv-vt~mghvdhgkt~lld~~r~~-~v~~~e-----------~ggitq~iga~~v~~~~~~~itf~dtpgh~af~ 403 (839)
T PRK05306 337 LVPRPPV-VTIMGHVDHGKTSLLDAIRKT-KVAAGE-----------AGGITQHIGAYQVETENGKKITFLDTPGHEAFT 403 (839)
T ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHCC-CCCCCC-----------CCCCCCEEEEEEEEECCCCEEEEECCCCHHHHH
T ss_conf 5668988-988577467731489998628-753556-----------787552223499995699879985588558899
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEE
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001-11014532210
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTP 164 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~p 164 (392)
.=-.||+...|.++|||+|++|++|||.|.+..+++.|+| |||||||||.-+.+ .+.++.++.++ |-.-.|.++.+
T Consensus 404 ~mr~rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp-~ivaink~d~~~a~--~~~v~~~l~~~~~~~e~~gg~~~ 480 (839)
T PRK05306 404 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELTEYGLVPEEWGGDTI 480 (839)
T ss_pred HHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCHHHCCCCEE
T ss_conf 9986357654369999977777567789999999974998-89997404678898--89999999984986454289448
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC--CCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 23311467641144456521233203443102--5222210000110000000135544543014874245348967999
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTH--IPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEI 242 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~--~~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i 242 (392)
++++||.+|. +++.|||+|.-. +-.-..+.+.+.+-.|-+..-.+|+|.|++--|.+|+|++||.+..
T Consensus 481 ~v~~sa~~~~----------~~~~l~e~i~l~ae~~~l~a~~~~~a~g~vie~~~~~~~g~v~t~lv~~gtl~~gd~~v~ 550 (839)
T PRK05306 481 FVPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGVVIEAKLDKGRGPVATVLVQNGTLKVGDIVVA 550 (839)
T ss_pred EEEEEECCCC----------CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEECCEECCCCEEEE
T ss_conf 9981515788----------789999999987665204479998617999987752787505899984271325998998
Q ss_pred EECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHHH-HCCCCCCEEECHHEEE
Q ss_conf 506874321254121001-2114432100136664-1124543220211773
Q gi|254780263|r 243 IGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGLL-LRGVNRADVPRGRVVC 292 (392)
Q Consensus 243 ~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l~-Lkgi~~~di~rGdvl~ 292 (392)
.. ...+|+++..+ ++.+++|.|+.-|-+. |+++. ..||.+.
T Consensus 551 g~-----~~g~vr~m~~~~g~~~~~a~Ps~pv~i~G~~~~P----~aGd~~~ 593 (839)
T PRK05306 551 GT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGVP----QAGDEFV 593 (839)
T ss_pred EC-----CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCC----CCCCEEE
T ss_conf 10-----2055101588999898714898777960567899----8888778
No 60
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=100.00 E-value=4e-43 Score=286.46 Aligned_cols=184 Identities=22% Similarity=0.369 Sum_probs=140.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---H----HHCCCCCCCCHHHHHCCCEEEEEEEEEEC-----CCEEEEEEECCCC
Q ss_conf 9999904689887899999987644---4----20013126868698629206378999821-----9908999847873
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE---E----KKEYGDIDSAPEEKLRGITIATAHVSYET-----DKRFYSHIDCPGH 81 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~---~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~iiD~PGH 81 (392)
||+++||||||||||+++|+...+. . ......||+.++||+|||||.++...+.| +.+.+||||||||
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC------CCCHHHH---HHCCCCCCE
Q ss_conf 0246779877400233145201234433210677888863187602331002333------5612221---101232100
Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA------VDDDELL---DISEYEIRD 152 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~------v~~~~~~---~~i~~~i~~ 152 (392)
.||..+|.+|++.+|+|+|||||.+|+++||++|+..|...++| +|++|||||+ .++++.| ..+.+++..
T Consensus 82 ~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~-~ilviNKiDRLi~el~l~p~day~~~~~ii~~vn~ 160 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 41799999888637767999987888757799999999986999-89999882343144069989999989999999999
Q ss_pred EEEEEE----EE---EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 111014----53---2210233114676411444565212332034431025222
Q gi|254780263|r 153 LLKEHK----YS---DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 153 ~l~~~~----~~---~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
++.+.. +. .+..+++.|+..||...-. .+.++..|++++.+++|.|
T Consensus 161 ~i~~~~~~~~~~~~p~~~nV~f~Sa~~gw~ftl~--~fa~~y~l~d~i~~~ip~P 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTLE--SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHCCCCCCEECCCCCCEEEEEECCCEEECCC--CHHHHHHHHHHHHHHCCCC
T ss_conf 9997078735165688796999970005212362--3211689999999638898
No 61
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=100.00 E-value=2.9e-42 Score=281.13 Aligned_cols=184 Identities=27% Similarity=0.386 Sum_probs=140.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH----HHHCCCCCCCCHHHHHCCCEEEEEEEEE----------ECCCEEEEEEECC
Q ss_conf 9999904689887899999987644----4200131268686986292063789998----------2199089998478
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRGITIATAHVSY----------ETDKRFYSHIDCP 79 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~----~~~~~~~~D~~~~E~~rGiTi~~~~~~~----------~~~~~~i~iiD~P 79 (392)
||+++||||||||||+++|+...+. .+.....||+.++||+|||||.++...+ .++++.+||||||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------CCHHHHHHC---CCCC
Q ss_conf 7302467798774002331452012344332106778888631876023310023335------612221101---2321
Q gi|254780263|r 80 GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV------DDDELLDIS---EYEI 150 (392)
Q Consensus 80 GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v------~~~~~~~~i---~~~i 150 (392)
||.||..+|.+|++.+|+|+|||||.+|+++||++++..|...++| +|++|||||+. ++++.|+.. .+++
T Consensus 82 GH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~-~il~iNKiDRli~el~l~p~day~~l~~iie~v 160 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHCCCCHHHHHHHHHHHHHHH
T ss_conf 5698999999999856817996104578577899999999985999-799998903650011799899999999999999
Q ss_pred CEEEE-------------EEEEEE-EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 00111-------------014532-210233114676411444565212332034431025222
Q gi|254780263|r 151 RDLLK-------------EHKYSD-DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP 200 (392)
Q Consensus 151 ~~~l~-------------~~~~~~-~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p 200 (392)
..++. +..+.+ +..+++.|+..||..+- .....+..|++++.+++|.|
T Consensus 161 N~~i~~~~~~~~~~~~~~~~~~~p~~gnV~f~Sa~~Gw~f~l--~~fa~ly~ll~~iv~~iP~P 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI--IKFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HHHHHHHCHHHHCCCCCCCEEECCCCCCEEEEECCCCCCCCC--CCHHHHHHHHHHHHHHCCCC
T ss_conf 999987230433035532102077778389998323771267--54121899999999628998
No 62
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=7.4e-42 Score=278.59 Aligned_cols=223 Identities=25% Similarity=0.307 Sum_probs=159.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC-E-----------------E
Q ss_conf 827999990468988789999998764442001312686869862920637899982199-0-----------------8
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK-R-----------------F 72 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~-----------------~ 72 (392)
+.+ +.++||||||||||++.|-+. .-...+ .-|||...+..++.++. . -
T Consensus 5 ~PI-vtimGHVDhGKTsLLD~iR~t-~V~~~E-----------aGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipg 71 (592)
T PRK04004 5 QPI-VVVLGHVDHGKTTLLDKIRGT-AVAAKE-----------AGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPG 71 (592)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHCC-CCCCCC-----------CCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf 988-999787377763689998628-773555-----------7762323065984123101103443344332345677
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-CHH----H-----
Q ss_conf 999847873024677987740023314520123443321067788886318760233100233356-122----2-----
Q gi|254780263|r 73 YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD-DDE----L----- 142 (392)
Q Consensus 73 i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~-~~~----~----- 142 (392)
++|||||||+.|..=-.||++.+|.|+|||||++|++|||.|.+.+++..++| ||||+||||++. |+. -
T Consensus 72 llfiDTPGHeaFt~mR~RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP-~IVAiNKiDr~~gw~~~~~~~~~~~~ 150 (592)
T PRK04004 72 LLFIDTPGHEAFSNLRKRGGALADIAILVVDINEGFQPQTIESLNILKSRKTP-FVVAANKIDRIPGWKSVEGAPFLESF 150 (592)
T ss_pred CEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 55765996599999997367457889999977888676279999999975998-89998622356667767674112322
Q ss_pred ---HHHCCCCC----CE---EEEEE-----------EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC----
Q ss_conf ---11012321----00---11101-----------4532210233114676411444565212332034431025----
Q gi|254780263|r 143 ---LDISEYEI----RD---LLKEH-----------KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI---- 197 (392)
Q Consensus 143 ---~~~i~~~i----~~---~l~~~-----------~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~---- 197 (392)
.+.+..++ .+ -|.+. .|..+++++|+||.+|- +++.||+.|....
T Consensus 151 ~~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGe----------Gi~dLL~~i~~Laq~~l 220 (592)
T PRK04004 151 KKQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYL 220 (592)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCC----------CHHHHHHHHHHHHHHHH
T ss_conf 31738899999888888889998728763221454345881489978205689----------98999999999999999
Q ss_pred C-CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCC
Q ss_conf 2-222100001100000001355445430148742453489679995068743212541210
Q gi|254780263|r 198 P-TPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVE 258 (392)
Q Consensus 198 ~-~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~ 258 (392)
. .-..+.+.|.+-.|-++-..+|.|++++--|.+|+|++||.+.+....+ ...++|+++.
T Consensus 221 ~~~Lka~~~~~a~GtViEsk~dkG~G~vatVIv~~GtLk~GD~IV~g~~~G-pi~tkVRALl 281 (592)
T PRK04004 221 EEELKIEVEGPGKGTVLEVKEERGLGTTLDVILYDGTLRKGDTIVVGGLDG-PIVTKVRALL 281 (592)
T ss_pred HHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCEECCCCEEEEEECCC-CCCCCHHHHH
T ss_conf 985367999986189999986079886179999768471699999951578-6200047660
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=100.00 E-value=4.6e-42 Score=279.87 Aligned_cols=161 Identities=42% Similarity=0.605 Sum_probs=141.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206378999821-990899984787302467798774
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
-||++||+|||||||+++|++. ++|+.++|++||+|+++++.++++ ++++++|+|||||++|+++|++++
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~---------~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh~~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI---------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGA 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCC---------CCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 9999926887299999998496---------4663333334863798546878648998999994878799999999987
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEE
Q ss_conf 00233145201234433210677888863187602331002333561222110123210011101453221023311467
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALC 172 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~ 172 (392)
+.+|+|+|||||++|+++||+||+.+++.+|+|++|+++||||++++++ ++.++.+++++++...+ .+.|++|+||.+
T Consensus 73 ~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~-~~~~~~~i~~~l~~~~~-~~~pii~iSA~t 150 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDW-LELVEEEIRELLAGTFL-ADAPIFPVSAVT 150 (164)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHHHHCCC-CCCEEEEEECCC
T ss_conf 4267258998617788888999999998738872787346342579789-99999999999974399-998299946989
Q ss_pred EEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 64114445652123320344310
Q gi|254780263|r 173 ALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 173 g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
|. +++.|+++|++
T Consensus 151 G~----------Gi~eL~~~I~e 163 (164)
T cd04171 151 GE----------GIEELKEYLDE 163 (164)
T ss_pred CC----------CHHHHHHHHHH
T ss_conf 82----------99999999984
No 64
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=100.00 E-value=4.8e-42 Score=279.76 Aligned_cols=301 Identities=22% Similarity=0.317 Sum_probs=210.6
Q ss_pred EEEEEECCCCCHHHHHHHHHH----------HHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf 999990468988789999998----------7644420013126868698629206378999821990899984787302
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITK----------YYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~----------~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~ 83 (392)
|+|||.|.|||||||++.++= ..++.....+..||+.-|++|||+|.++..+|.|.++.+|++|||||+|
T Consensus 13 ~FAIISHPDAGKTT~TEK~LLyG~AIQ~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPGH~D 92 (530)
T TIGR00503 13 TFAIISHPDAGKTTLTEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTPGHED 92 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCCCCC
T ss_conf 54366168887424678888742566522441220012212213788750588144412774145774562036858887
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 4677987740023314520123443321067788886318760233100233356--12221101232100111014532
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD--DDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~--~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
|.-.+.|-++.+|.|++||||.+|++.||+.-+.++|+-..| |+-++||+|+-. |=|+.|+++++++- ..+.-
T Consensus 93 FSEDTYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~P-I~TF~NKLDR~~~~P~ELlDEvE~~L~~----~~~~~ 167 (530)
T TIGR00503 93 FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLP-ILTFINKLDRDIRDPLELLDEVENELKI----NCAPI 167 (530)
T ss_pred CCCHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCC-HHHHHHHCCCCCCCHHHHHHHHHHHHCC----CEEEE
T ss_conf 640467999985123001111256123424454201000474-4335232065435537888888877064----11343
Q ss_pred EEECCCCEEEEE-----------------------------EE--------CCC--------------------------
Q ss_conf 210233114676-----------------------------41--------144--------------------------
Q gi|254780263|r 162 DTPIIRGSALCA-----------------------------LQ--------GTN-------------------------- 178 (392)
Q Consensus 162 ~~pii~~sa~~g-----------------------------~~--------~~n-------------------------- 178 (392)
.+||=...-+.| ++ |++
T Consensus 168 ~~PIG~G~~F~GVY~~~~~~~yLy~r~G~~~~~~~~~~~~~L~~P~L~~~~G~D~~~~l~dELELv~~A~~EFd~~~~~~ 247 (530)
T TIGR00503 168 TYPIGCGKLFKGVYHLLKDEIYLYQRSGTGGTIKAVRVVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFLG 247 (530)
T ss_pred ECCCCCCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 05657884311355430140667630588841667777632688015677657899999889999986302456899853
Q ss_pred ---------CCCCCCCCCCHHHHHHCCCCCCCCC-CC-----------CCCCEECCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf ---------4565212332034431025222210-00-----------01100000001355445430148742453489
Q gi|254780263|r 179 ---------KELGEDSIHALMKAVDTHIPTPQRS-LD-----------APFLMHIEGSCGIEGRGTVVTGCIKRGRIKAG 237 (392)
Q Consensus 179 ---------~~~~~~~~~~Ll~~i~~~~~~p~~~-~~-----------~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~G 237 (392)
.-+...+.+-+|+++..+-|.|... .| ..|.|=||.-...+.+-+|++-||.||...+|
T Consensus 248 GE~TPVFFG~Al~NFGV~~~L~~l~~~A~~P~~~~~~~~TvE~~~e~FsGFVFK~QANMDPKHRDRvAFlRV~SGKyEK~ 327 (530)
T TIGR00503 248 GELTPVFFGTALGNFGVDHFLDGLLQYAPKPEARQSDTRTVEPTEEKFSGFVFKLQANMDPKHRDRVAFLRVVSGKYEKG 327 (530)
T ss_pred CCCCCEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCEEECC
T ss_conf 86463111000101008999999998607888765677540234335442288863379886335057777641346347
Q ss_pred CEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECC------CCCCCCEEEEEEEEEE
Q ss_conf 6799950687432125412100-12114432100136664112454322021177326------7776300016899971
Q gi|254780263|r 238 SDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAP------GSIQEYSRFRASVYIL 310 (392)
Q Consensus 238 d~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~------~~~~~~~~f~A~i~il 310 (392)
+.+...-.++.-..++-..+.. .|..++.|||||++||+= .--++.||++..- .-|.-+..+-++|..
T Consensus 328 M~~k~~R~gK~V~~S~~~~~~A~~R~~v~~AYaGD~iGL~N----~G~~~IGDT~~~GE~~~f~gIP~F~PELF~~~R~- 402 (530)
T TIGR00503 328 MKLKHVRTGKDVVLSDALTLMAGDREHVEEAYAGDIIGLHN----HGTIQIGDTFTQGEKLKFTGIPNFAPELFRRLRL- 402 (530)
T ss_pred CEECCCCCCCEEEECCHHHHHHCCHHHHHHCCCCCEEEECC----CCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHC-
T ss_conf 56614213553686323565440212231127776531068----8426747720248656638778866789998621-
Q ss_pred ECCCCCCCCCCCCCCE
Q ss_conf 0567875555115978
Q gi|254780263|r 311 TASEGGRTTGFMDNYR 326 (392)
Q Consensus 311 ~~~~~~~~~~~~~~~~ 326 (392)
..|.....++.|..
T Consensus 403 --~DP~~~K~l~KG~~ 416 (530)
T TIGR00503 403 --KDPLKQKQLLKGLV 416 (530)
T ss_pred --CCCHHHHHHHCCCH
T ss_conf --38345566550410
No 65
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=100.00 E-value=4.4e-42 Score=279.98 Aligned_cols=144 Identities=26% Similarity=0.352 Sum_probs=118.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHCCCEEEEEE------------------------EEEE
Q ss_conf 999990468988789999998764442001--31268686986292063789------------------------9982
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEY--GDIDSAPEEKLRGITIATAH------------------------VSYE 67 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~--~~~D~~~~E~~rGiTi~~~~------------------------~~~~ 67 (392)
+|+++||||||||||+|+|++...+.++.. ..+++++||.++|+|.++++ ..++
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 1990899984787302467798774--00233145201234433210677888863187602331002333561222110
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGA--TQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDI 145 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~--~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~ 145 (392)
..++.++|+|+|||++|++||++|+ +.+|+|+|||+|++|+++||+||+.++.++++| ++|+|||||+++++. ++.
T Consensus 81 ~~~k~it~iD~pGH~~y~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip-~~vvitKiDl~~~~~-l~~ 158 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPANI-LQE 158 (224)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHHH-HHH
T ss_conf 678679999788739999999987635568989999317889779999999999983999-899998977689899-999
Q ss_pred CCCCCCEEEEEEEE
Q ss_conf 12321001110145
Q gi|254780263|r 146 SEYEIRDLLKEHKY 159 (392)
Q Consensus 146 i~~~i~~~l~~~~~ 159 (392)
...+++++++..++
T Consensus 159 ~~~~i~~~lk~p~~ 172 (224)
T cd04165 159 TLKDLKRILKVPGV 172 (224)
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999999704475
No 66
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=2.5e-40 Score=269.13 Aligned_cols=137 Identities=33% Similarity=0.506 Sum_probs=118.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH------HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 999990468988789999998764------44200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS------EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~------~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
||+++||+|||||||+++|+...+ +...+...+|..++||+|||||.++..+|+|++++|||||||||.||..+
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~~e 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHHHHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999389989999999999965712226633068303785499898487031058999989987999889884656668
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC--HHHHHHCCCCCCEEEE
Q ss_conf 9877400233145201234433210677888863187602331002333561--2221101232100111
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD--DELLDISEYEIRDLLK 155 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~--~~~~~~i~~~i~~~l~ 155 (392)
|.++++.+|.|++||||.+|+++||++++..++.+++|. +++|||||+-+. ++.++ ++++.|.
T Consensus 81 ~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~-iifiNKmDre~adf~~~l~----~i~~~l~ 145 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPT-IIFVNKIDRAGADLEKVYQ----EIKEKLS 145 (237)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCE-EEEEECCCCCCCCHHHHHH----HHHHHHC
T ss_conf 988976348169999658882234499999999859985-9986244578999999999----9999978
No 67
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-39 Score=261.43 Aligned_cols=211 Identities=30% Similarity=0.356 Sum_probs=161.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC---CEEEEEEECCCCHHHHH
Q ss_conf 882799999046898878999999876444200131268686986292063789998219---90899984787302467
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD---KRFYSHIDCPGHADYVK 86 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~---~~~i~iiD~PGH~~f~~ 86 (392)
++.+ +.++||||||||||++.|=+. .-...+ .-|||...+..+++++ ...++|||||||+-|+.
T Consensus 4 R~Pv-VtimGHVDHGKTtLLD~IR~t-~Va~~E-----------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~ 70 (509)
T COG0532 4 RPPV-VTIMGHVDHGKTTLLDKIRKT-NVAAGE-----------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA 70 (509)
T ss_pred CCCE-EEEECCCCCCCCCHHHHHHCC-CCCCCC-----------CCCEEEEEEEEEEEECCCCCCEEEEECCCCHHHHHH
T ss_conf 8988-999674358842016667417-643566-----------785001743499986468865289974895788887
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEEC
Q ss_conf 7987740023314520123443321067788886318760233100233356122211012321001-110145322102
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTPI 165 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~pi 165 (392)
--.||++.+|.|+|||||++|++|||.|.+.+++.+|+| +||++||||+.+.+ .+.+..++.+. |..-.|..+..+
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n--p~~v~~el~~~gl~~E~~gg~v~~ 147 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEAN--PDKVKQELQEYGLVPEEWGGDVIF 147 (509)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCHHHCCCCEEE
T ss_conf 875577544579999975678566179999999877999-89998543279988--789999887779887661881499
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEE
Q ss_conf 331146764114445652123320344310252--222100001100000001355445430148742453489679995
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIP--TPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEII 243 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~--~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~ 243 (392)
+|+||.+|. +++.||+.+.-.-. .-..+.+.+.+-.|-++...+|.|.+++--|.+|+|++||.+.+.
T Consensus 148 VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g 217 (509)
T COG0532 148 VPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAG 217 (509)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEEEEECCEEECCCEEEEC
T ss_conf 974324787----------9799999999888998644288987249999998626887528999964847449999983
Q ss_pred ECC
Q ss_conf 068
Q gi|254780263|r 244 GMG 246 (392)
Q Consensus 244 p~~ 246 (392)
...
T Consensus 218 ~~~ 220 (509)
T COG0532 218 GEY 220 (509)
T ss_pred CCC
T ss_conf 787
No 68
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=5.3e-39 Score=260.89 Aligned_cols=150 Identities=27% Similarity=0.357 Sum_probs=123.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHH------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 9999904689887899999987------6444200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
|||++||+|||||||+++|+.. .+....+...+|++++||+|||||.++..+|+|++++|||||||||.||+.+
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~DF~~e 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999089999899999999966996657654589735778788986796751355788889979999869897579999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 9877400233145201234433210677888863187602331002333561222110123210011101453221023
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
+.++++.+|+|++||||.+|+++||+..+..++.+++|. |++|||||+.+.+ |+.+-.++++.|...-..-.+|+-
T Consensus 81 ~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~-i~fINKmDr~~ad--~~~~l~~i~~~lg~~~vp~~~Pig 156 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPR-IIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIG 156 (268)
T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCC--HHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 999840478399994187547687999999999859998-9999787878996--477999999986898499996652
No 69
>KOG1145 consensus
Probab=100.00 E-value=1.7e-38 Score=257.66 Aligned_cols=236 Identities=30% Similarity=0.334 Sum_probs=173.3
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHHHH
Q ss_conf 388279999904689887899999987644420013126868698629206378999821-9908999847873024677
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~~~ 87 (392)
++|.+ +-++||||||||||++.|- ...-.+.+. -|||..++...... ++++|||+|||||+-|..=
T Consensus 151 ~RpPV-VTiMGHVDHGKTTLLD~lR-ks~VAA~E~-----------GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aM 217 (683)
T KOG1145 151 PRPPV-VTIMGHVDHGKTTLLDALR-KSSVAAGEA-----------GGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAM 217 (683)
T ss_pred CCCCE-EEEEECCCCCHHHHHHHHH-HCCEEHHHC-----------CCCCCEECEEEEECCCCCEEEEECCCCHHHHHHH
T ss_conf 89986-9986013577001998874-072201323-----------7710000229996389977887568747889999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE-EEEEEEEEEEEECC
Q ss_conf 98774002331452012344332106778888631876023310023335612221101232100-11101453221023
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRD-LLKEHKYSDDTPII 166 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~-~l~~~~~~~~~pii 166 (392)
-.||+..+|.++|||+|++|++|||.|.+..|+..++| +||+|||+|....+ .+.++.++-. -+.--.+.+++++|
T Consensus 218 RaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvi 294 (683)
T KOG1145 218 RARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVI 294 (683)
T ss_pred HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCHHHCCCCEEEE
T ss_conf 86268644479999972677567689999988765997-89998436789989--8999999987693277707823699
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC--CCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 31146764114445652123320344310252--2221000011000000013554454301487424534896799950
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIP--TPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIG 244 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~--~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p 244 (392)
|+||++| +| ++.|.+++...-. .-..+..+|+.-+|-+.+-.+|+|.+.+--|..|+|+.|+-+...
T Consensus 295 piSAl~g---~n-------l~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G- 363 (683)
T KOG1145 295 PISALTG---EN-------LDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG- 363 (683)
T ss_pred EEECCCC---CC-------HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEE-
T ss_conf 8651147---98-------689999999999986411688997128999864137756426999953623156589970-
Q ss_pred CCCCCCCEEEECCCCC-CCCCCCCCCCHHHHH
Q ss_conf 6874321254121001-211443210013666
Q gi|254780263|r 245 MGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGL 275 (392)
Q Consensus 245 ~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l 275 (392)
. .-.||+.+..+ ++++++|.|++-+.+
T Consensus 364 --~--~w~KVr~l~D~nGk~i~~A~Ps~pv~V 391 (683)
T KOG1145 364 --K--SWCKVRALFDHNGKPIDEATPSQPVEV 391 (683)
T ss_pred --C--HHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf --2--144334455237979221489983476
No 70
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.3e-37 Score=252.28 Aligned_cols=139 Identities=30% Similarity=0.418 Sum_probs=118.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH------H----HHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH
Q ss_conf 9999904689887899999987644------4----20013126868698629206378999821990899984787302
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE------E----KKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~------~----~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~ 83 (392)
|||++||+|||||||+++|+...+. . ......+|..++|++|||||.++..+|+|++++|||||||||.|
T Consensus 4 niai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~~D 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79998479999899999999866863338546303688860468879998659448636378878998999997969778
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE
Q ss_conf 467798774002331452012344332106778888631876023310023335612221101232100111
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLK 155 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~ 155 (392)
|+.++.++++.+|.|++||||.+|++.||+..+..++.+++|.+ ++|||||+.+.+ |+.+-+++++.|.
T Consensus 84 F~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~i-ifINKmDr~~ad--f~~~l~~i~~~lg 152 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDREGRD--PLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCCCCC--HHHHHHHHHHHHC
T ss_conf 99999999988645479952566653558999999997299979-998534567898--7899999999868
No 71
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=1.7e-37 Score=251.60 Aligned_cols=134 Identities=28% Similarity=0.366 Sum_probs=117.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHH------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 9999904689887899999987------6444200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
||+++||+|||||||+++|+.. .++...+...+|..++|++||+||.++..+|+|++++|||||||||.||..+
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~DF~~e 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 98999689999889999999866873558155389755668488987687073366899989989999869696788999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCC
Q ss_conf 987740023314520123443321067788886318760233100233356--1222110123
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD--DDELLDISEY 148 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~--~~~~~~~i~~ 148 (392)
+.++++.+|+|++||||.+|+++||+..+..++.+++|. +++|||||+-. +++.++.+++
T Consensus 81 ~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~-i~fINKmDre~ad~~~~l~~i~~ 142 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred HHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCE-EEEEECCCCCCCCCHHHHHHHHH
T ss_conf 999987755599998467644263699998899849998-99998878778871668999999
No 72
>TIGR00490 aEF-2 translation elongation factor aEF-2; InterPro: IPR004543 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position , . This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents archaeal EF2 proteins (also known as aEF2), which are more similar to eukaryotic EF2 than to bacterial EF2 (or EFG), both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. More information about these proteins can be found at Protein of the Month: Elongation Factors .; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=100.00 E-value=1.7e-37 Score=251.49 Aligned_cols=276 Identities=28% Similarity=0.418 Sum_probs=202.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHCCCEEEEEEEE----EECCCEEEEEEECCCCHHHH
Q ss_conf 999990468988789999998764----4420013126868698629206378999----82199089998478730246
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS----EEKKEYGDIDSAPEEKLRGITIATAHVS----YETDKRFYSHIDCPGHADYV 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~----~~~~~~~~~D~~~~E~~rGiTi~~~~~~----~~~~~~~i~iiD~PGH~~f~ 85 (392)
||++++|+|||||||.+-|+...+ ..+.....+|..++|++|||||+.+... |+.+.|.+|+||||||.||.
T Consensus 21 niGi~ahidhGkttlsdnllaGaGmis~elaG~q~~ldfde~e~~rGiti~aanvsmvh~yeG~~ylinlidtPGhvdfG 100 (724)
T TIGR00490 21 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGEQLYLDFDEQEQERGITIDAANVSMVHEYEGNEYLINLIDTPGHVDFG 100 (724)
T ss_pred HEEEEEEECCCCCHHHHHHHHCCCHHHHHHCCCCEEECCCHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCC
T ss_conf 00037863177511223444213323454056410002441352377267641156765314750243331488621056
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------CC---HHHHHHCCCCCCEEEEE
Q ss_conf 7798774002331452012344332106778888631876023310023335------61---22211012321001110
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV------DD---DELLDISEYEIRDLLKE 156 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v------~~---~~~~~~i~~~i~~~l~~ 156 (392)
+.+.|++...|++++||+|.+|++|||...+..+..-.++++ ++|||+|+. ++ ++|+-.+-.++.++++.
T Consensus 101 Gdvtramra~dG~~vvv~aveG~mPqtetvlrqal~e~v~Pv-lf~nkvdrli~el~l~~~~lq~r~~k~i~~~n~li~~ 179 (724)
T TIGR00490 101 GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRLINELKLTPEELQERLIKIIAEVNKLIKK 179 (724)
T ss_pred CHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEE-EEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 248888776476389995025657615789999987318706-7723478888862468889999999999999999974
Q ss_pred E---EEEEEE-------ECCCCEEEEEEECCCCCCCC---------------------CC---CCCHHHHHHCCCCCCC-
Q ss_conf 1---453221-------02331146764114445652---------------------12---3320344310252222-
Q gi|254780263|r 157 H---KYSDDT-------PIIRGSALCALQGTNKELGE---------------------DS---IHALMKAVDTHIPTPQ- 201 (392)
Q Consensus 157 ~---~~~~~~-------pii~~sa~~g~~~~n~~~~~---------------------~~---~~~Ll~~i~~~~~~p~- 201 (392)
. .|.+++ ..-..||...|...-+.+.. .+ -..+|+.+..++|.|.
T Consensus 180 m~P~~~~~~W~~~v~~Gs~afGsa~~nWa~~vP~~~~~Gi~f~~~~~~~~e~~~~ela~k~Pl~~v~l~mv~~hlPsP~e 259 (724)
T TIGR00490 180 MAPEEFKDKWKVRVEDGSVAFGSAYYNWAISVPIMKKTGITFKDIYKYIKEDKQKELAKKAPLHQVVLDMVIKHLPSPAE 259 (724)
T ss_pred CCCCCHHCCCEEEECCCCCHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCHH
T ss_conf 17610000004765156410112221000204430013775999999863011455764065889999999974489622
Q ss_pred ------------------------CCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECC
Q ss_conf ------------------------10000110000000135544543014874245348967999506874321254121
Q gi|254780263|r 202 ------------------------RSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDV 257 (392)
Q Consensus 202 ------------------------~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si 257 (392)
.+.++|+-..|.++.-.+..|.|..||+++|.++.|+++++.....+ ..++-.++
T Consensus 260 ~q~~r~~~~W~Gd~~se~G~am~~~dP~GP~a~~~t~~~~~~~aG~~~~~r~y~G~i~~G~e~y~v~~~~k-~~~q~v~~ 338 (724)
T TIGR00490 260 AQKYRIPVIWKGDLNSEAGKAMLNCDPEGPLAVMITKIVVDKHAGEVAVGRLYSGAIKKGSEVYLVDRKAK-ARIQQVGV 338 (724)
T ss_pred HHHHHHHHHEECCCCCHHCCHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCHHH-CCEEEEEE
T ss_conf 44401001010465400054210048998614455655660366816775553150036866898643000-21124667
Q ss_pred CCC--CCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECCC
Q ss_conf 001--21144321001366641124543220211773267
Q gi|254780263|r 258 EMF--RKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295 (392)
Q Consensus 258 ~~~--~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~~ 295 (392)
++. |-++|+..||.++++. ..++-..|.++|+++
T Consensus 339 ymGP~r~~~d~~~aGni~a~~----G~k~a~aG~t~C~~~ 374 (724)
T TIGR00490 339 YMGPERVEVDEIPAGNIVAVV----GLKEAVAGETICSTD 374 (724)
T ss_pred EECCEECCCCCCCCCCEEEEE----ECCCCCCCCCCCCCH
T ss_conf 766702012422677568874----032111453002521
No 73
>KOG0469 consensus
Probab=100.00 E-value=4.9e-36 Score=242.47 Aligned_cols=282 Identities=26% Similarity=0.372 Sum_probs=193.7
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHCCCEEEEEEEEE--E--------------C
Q ss_conf 38827999990468988789999998764----44200131268686986292063789998--2--------------1
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYS----EEKKEYGDIDSAPEEKLRGITIATAHVSY--E--------------T 68 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~----~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~--------------~ 68 (392)
.+.--|+.+|+|||||||||++.|..+.+ ..+.+...||+.++|+||||||.+....+ + .
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHCCEEEEEEEEEEHHHHHHHHHHHHCCCCCC
T ss_conf 23544204899843785500677877615124122678512434101565565763201320121317679985177877
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC------CCHHH
Q ss_conf 990899984787302467798774002331452012344332106778888631876023310023335------61222
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV------DDDEL 142 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v------~~~~~ 142 (392)
+++.||+||.|||.||..++.++++..|+||+|||..+|+.-||+..+..|-.-.|++. +++||||++ ..+++
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPv-lv~NK~DRAlLELq~~~EeL 174 (842)
T KOG0469 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LVMNKMDRALLELQLSQEEL 174 (842)
T ss_pred CCEEEEECCCCCCCCCHHHHHHEEEECCCCEEEEECCCCEEECHHHHHHHHHHHHCCCE-EEEEHHHHHHHHHCCCHHHH
T ss_conf 63368951689854523442310473267089997247448525999999987433524-77414667888613789999
Q ss_pred HH---HCCCCCCEEEEEEEEE--EE-------EECCCCEEEEEEECC--------------------------C---C-C
Q ss_conf 11---0123210011101453--22-------102331146764114--------------------------4---4-5
Q gi|254780263|r 143 LD---ISEYEIRDLLKEHKYS--DD-------TPIIRGSALCALQGT--------------------------N---K-E 180 (392)
Q Consensus 143 ~~---~i~~~i~~~l~~~~~~--~~-------~pii~~sa~~g~~~~--------------------------n---~-~ 180 (392)
++ .+.+-+.-.+..++.. .+ ..+-.+|.+.||.-. | . .
T Consensus 175 yqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~kt 254 (842)
T KOG0469 175 YQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKT 254 (842)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
T ss_conf 99999997323179984146776734753777711003554114545999999999982876999999764013568667
Q ss_pred CCCC-----------------------------------------------------------------------CCCCH
Q ss_conf 6521-----------------------------------------------------------------------23320
Q gi|254780263|r 181 LGED-----------------------------------------------------------------------SIHAL 189 (392)
Q Consensus 181 ~~~~-----------------------------------------------------------------------~~~~L 189 (392)
.+|. -...|
T Consensus 255 kk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadal 334 (842)
T KOG0469 255 KKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADAL 334 (842)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHCCEECCCCCCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 76433234544685556415776036899999986012888999999741331252036654389999999745628889
Q ss_pred HHHHHCCCCCC-------------------------CCCCCCCCCEECCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEE
Q ss_conf 34431025222-------------------------21000011000000013554454-30148742453489679995
Q gi|254780263|r 190 MKAVDTHIPTP-------------------------QRSLDAPFLMHIEGSCGIEGRGT-VVTGCIKRGRIKAGSDVEII 243 (392)
Q Consensus 190 l~~i~~~~~~p-------------------------~~~~~~p~r~~I~~vf~i~g~G~-Vv~GrV~sG~l~~Gd~i~i~ 243 (392)
|+.|.-++|+| ..+.++|+.|+|+.-..-+..|+ .++|||.||++..|+++.+.
T Consensus 335 lemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiq 414 (842)
T KOG0469 335 LEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQ 414 (842)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCEECCCCEEEEE
T ss_conf 99998528990578888898761188735776676526999872775640165578742799733442301368578875
Q ss_pred ECCCCCC---CEEEECCC-----C--CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEEC
Q ss_conf 0687432---12541210-----0--1211443210013666411245432202117732
Q gi|254780263|r 244 GMGGKKL---KVKCTDVE-----M--FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCA 293 (392)
Q Consensus 244 p~~~~~~---~~kv~si~-----~--~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~ 293 (392)
.++..+- ..-+++|+ | +-++++.+.||.++|+ -|+|.--++.|-+-..
T Consensus 415 gPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGl--vGvDqfLvKtGTiTt~ 472 (842)
T KOG0469 415 GPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGL--VGVDQFLVKTGTITTS 472 (842)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE--EEHHHHHHCCCCEEEH
T ss_conf 899899708888898999999986265554566988757778--5166764304723205
No 74
>KOG0464 consensus
Probab=100.00 E-value=1.7e-35 Score=239.19 Aligned_cols=266 Identities=24% Similarity=0.274 Sum_probs=181.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHH------HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 9999904689887899999987------6444200131268686986292063789998219908999847873024677
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY------YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~------~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
||++++|+|+||||.+.+|+.. .++...+...+|.+..||||||||.++...|.|+++++|+||||||.||.-+
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEECCCCCCEEEEE
T ss_conf 13069985178740678899774022104656788537788888886483665404421235616765248884037987
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CHHHHHHCCCCCCE--EEEE------E
Q ss_conf 987740023314520123443321067788886318760233100233356--12221101232100--1110------1
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD--DDELLDISEYEIRD--LLKE------H 157 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~--~~~~~~~i~~~i~~--~l~~------~ 157 (392)
+.|-+...|+++.|+||+.|+++||...|..+...++|. ++++||||... .+...+.+++.+.. ++-+ .
T Consensus 119 verclrvldgavav~dasagve~qtltvwrqadk~~ip~-~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak 197 (753)
T KOG0464 119 VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPA-HCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAK 197 (753)
T ss_pred HHHHHHHHCCEEEEEECCCCCCCCEEEEEHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 898887750738998456776641221000301357845-3302346665554666889999873874178970155324
Q ss_pred EEEEE---------------------------------------------------------------------------
Q ss_conf 45322---------------------------------------------------------------------------
Q gi|254780263|r 158 KYSDD--------------------------------------------------------------------------- 162 (392)
Q Consensus 158 ~~~~~--------------------------------------------------------------------------- 162 (392)
+|+..
T Consensus 198 ~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i~a~ 277 (753)
T KOG0464 198 GFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKIDAE 277 (753)
T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 54402799988743457778875444457864234897899999999999999886112778999998750553346789
Q ss_pred ---------------EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECC-------CCCCCCC
Q ss_conf ---------------102331146764114445652123320344310252222100001100000-------0013554
Q gi|254780263|r 163 ---------------TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIE-------GSCGIEG 220 (392)
Q Consensus 163 ---------------~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~-------~vf~i~g 220 (392)
+|+...|| ....++..|++++.-++|.|+.-.-.-++.+-+ .+..++.
T Consensus 278 elksai~~lt~aq~a~~i~cgsa----------iknkgiqplldavtmylpspeernyeflqwykddlcalafkvlhdkq 347 (753)
T KOG0464 278 ELKSAIHELTCAQKAAPILCGSA----------IKNKGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLHDKQ 347 (753)
T ss_pred HHHHHHHHHHHHHHHCCEEHHHH----------HCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999866632012220034----------40367651233443226883540227776520137777666530013
Q ss_pred CCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEECC
Q ss_conf 454301487424534896799950687432125412100-12114432100136664112454322021177326
Q gi|254780263|r 221 RGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAP 294 (392)
Q Consensus 221 ~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~~ 294 (392)
+|...+-|++||+++.+-.+.......+....+..--+. .+.++++..||.+. +. .| ...--.||++.+.
T Consensus 348 rg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnia-lt-~g--lk~tatgdtivas 418 (753)
T KOG0464 348 RGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIA-LT-AG--LKHTATGDTIVAS 418 (753)
T ss_pred CCCEEEEEEECCCCCCCEEEEECCCCCCCCHHHHHCCCHHHHHHHHHCCCCCEE-EE-EC--CEEECCCCEEEEC
T ss_conf 486268998615446761366226653311176535541543102120346479-99-50--1431257768833
No 75
>KOG0467 consensus
Probab=99.98 E-value=1.1e-31 Score=215.50 Aligned_cols=125 Identities=26% Similarity=0.458 Sum_probs=111.8
Q ss_pred CEE-EEEEEECCCCCHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHH
Q ss_conf 827-999990468988789999998764----442001312686869862920637899982199089998478730246
Q gi|254780263|r 11 ESL-GLSTIGHVDHGKTTLTAAITKYYS----EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYV 85 (392)
Q Consensus 11 ~~~-ni~~iGhvd~GKSTL~~~L~~~~~----~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~ 85 (392)
+++ |+.+++|||||||||.+.|....+ +.+.....||..++|+.||||+.++...+..++|.|||||+|||.||.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CCEEEEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCHH
T ss_conf 75058999999648853257778750667415335606621046256661624431311101376589985589864506
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 779877400233145201234433210677888863187602331002333
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
.++-++...+|.|+++||+.+|+.+||...+..+..-|.+. |.+|||||+
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~-~lvinkidr 136 (887)
T KOG0467 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKP-ILVINKIDR 136 (887)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCE-EEEEEHHHH
T ss_conf 55326665047718999600254553899999999716745-999731666
No 76
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.97 E-value=3.5e-32 Score=218.63 Aligned_cols=157 Identities=33% Similarity=0.439 Sum_probs=118.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE---CCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899982---19908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE---TDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~---~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
-|+++||+|||||||+.+|++.. ...+..+|+|.++++..++ ++++.|+|+|||||++|...+.+
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~------------~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN------------VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC------------CCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHHHHHH
T ss_conf 89999489985989999985867------------504516981687153999988258871899989981677999999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE--EEEEEEEEEECCCC
Q ss_conf 7400233145201234433210677888863187602331002333561222110123210011--10145322102331
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLL--KEHKYSDDTPIIRG 168 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l--~~~~~~~~~pii~~ 168 (392)
+++.+|.++|||||.+|+++||+||+.+++.+++| +|+++||||+++++. +.+..++.++. ....+....|++|+
T Consensus 70 ~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p-~ivviNKiD~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~iIpv 146 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNANP--ERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCH--HHHHHHHHHHHCCCHHHCCCCCEEEEE
T ss_conf 98626889999864667545899999999876997-899998930898798--999999999754524552898759999
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780263|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
||.+|. +++.|+++|..
T Consensus 147 SA~tG~----------gi~~L~~~i~~ 163 (168)
T cd01887 147 SAKTGE----------GIDDLLEAILL 163 (168)
T ss_pred ECCCCC----------CHHHHHHHHHH
T ss_conf 899998----------99999999999
No 77
>KOG1144 consensus
Probab=99.95 E-value=8.2e-29 Score=197.72 Aligned_cols=231 Identities=24% Similarity=0.327 Sum_probs=162.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC------------------EEEEEE
Q ss_conf 99990468988789999998764442001312686869862920637899982199------------------089998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK------------------RFYSHI 76 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~------------------~~i~ii 76 (392)
++|+||||.|||-|++.|-+. +-.+.-.-|||..++.++|.-.+ -.+-+|
T Consensus 478 cCilGHVDTGKTKlld~ir~t------------NVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvI 545 (1064)
T KOG1144 478 CCILGHVDTGKTKLLDKIRGT------------NVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVI 545 (1064)
T ss_pred EEEEECCCCCCHHHHHHHHCC------------CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 789711126605788876205------------53224456600000541152677899999987502331378704896
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-C----------------
Q ss_conf 47873024677987740023314520123443321067788886318760233100233356-1----------------
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD-D---------------- 139 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~-~---------------- 139 (392)
|||||+.|..---||.+.||.||||||...|++|||.|.+.+++..+.| |||++||+|+.- |
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCC-EEEEEHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 5887255555665043345537778531116774206789988754897-598610134440442489831999998744
Q ss_pred -------HHHHHHCCCCCCE-------EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC---CC
Q ss_conf -------2221101232100-------111014532210233114676411444565212332034431025222---21
Q gi|254780263|r 140 -------DELLDISEYEIRD-------LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP---QR 202 (392)
Q Consensus 140 -------~~~~~~i~~~i~~-------~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p---~~ 202 (392)
..|++.+..++.+ |++......-+.++|.||++| ++++.|+-.|..+-... .-
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~ltQk~m~~kl 694 (1064)
T KOG1144 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQLTQKTMVEKL 694 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCC----------CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 789999999999999999971104434231467465588621221367----------8807899999999999999877
Q ss_pred CCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCC-------------CEEEECCCCCCCCCCCCC
Q ss_conf 000011000000013554454301487424534896799950687432-------------125412100121144321
Q gi|254780263|r 203 SLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKL-------------KVKCTDVEMFRKKLDEAI 268 (392)
Q Consensus 203 ~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~-------------~~kv~si~~~~~~v~~a~ 268 (392)
..-.-++..|..|-.+.|.|+.+---+..|.|+.||.|.+++++|..+ .-+|++-|+|++++.-|.
T Consensus 695 ~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~ 773 (1064)
T KOG1144 695 AYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHKEVKAAQ 773 (1064)
T ss_pred HHHHHEEEEEEEEEEECCCCCEEEEEEECCEECCCCEEEECCCCCCHHHHHHHHCCCCCHHHHCCCCCEEEHHHHHHHC
T ss_conf 4240100478998752377716899987565526987998279986168889763886447641055332366756530
No 78
>KOG0468 consensus
Probab=99.95 E-value=1.1e-27 Score=190.83 Aligned_cols=124 Identities=27% Similarity=0.396 Sum_probs=105.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHHHCCCEEEEEEEEE-----ECCCEEEEEEECCCCH
Q ss_conf 7999990468988789999998764442-----00131268686986292063789998-----2199089998478730
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEK-----KEYGDIDSAPEEKLRGITIATAHVSY-----ETDKRFYSHIDCPGHA 82 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~-----~~~~~~D~~~~E~~rGiTi~~~~~~~-----~~~~~~i~iiD~PGH~ 82 (392)
.|++++||-.||||+|++.|....+... .....+|.+..|++||++|.+.-... +.+.|-+||+|||||.
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 99988611456715787763131346555542356313664245675485676132289985676724335552588755
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 2467798774002331452012344332106778888631876023310023335
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
+|+-+|.++++++|+++|+|||.+|++=+|.+-+..+-.-..+ ++|||||||+.
T Consensus 209 nF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468 209 NFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CCHHHHHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCC-EEEEEEHHHHH
T ss_conf 5068888886523637999982257052099999998742676-79997416789
No 79
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.95 E-value=2.6e-28 Score=194.63 Aligned_cols=224 Identities=26% Similarity=0.291 Sum_probs=157.4
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-----------CEE------
Q ss_conf 882799999046898878999999876444200131268686986292063789998219-----------908------
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-----------KRF------ 72 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-----------~~~------ 72 (392)
-++-|+.--|=|=| -|||++++ ++..-..++.| |||..+|.+...++ ...
T Consensus 549 tethnfianGivvh-nTTLLDkI-Rks~Vv~kEAG-----------giTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iP 615 (1145)
T TIGR00491 549 TETHNFIANGIVVH-NTTLLDKI-RKSAVVKKEAG-----------GITQHIGASEVPLDVIKKICGDLLKKFKIKLKIP 615 (1145)
T ss_pred CCHHHHHHCCEEEE-CCCCCCCC-CCCCEEEECCC-----------CCCEECCCEECCHHHHHHHCHHHHHCEEEEEECC
T ss_conf 00012322664785-14331000-33401324778-----------8401006665466898651321211402578658
Q ss_pred -EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-CH--H-------
Q ss_conf -999847873024677987740023314520123443321067788886318760233100233356-12--2-------
Q gi|254780263|r 73 -YSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD-DD--E------- 141 (392)
Q Consensus 73 -i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~-~~--~------- 141 (392)
+-|||||||+-|+-==-||=|.||.||||||-.||.+|||.|.+.+++..+.| ||||-||+|+++ |+ +
T Consensus 616 GLLfIDTPGHeaFt~LRkRGGAlADlAILvVDInEGfkpQT~EA~~ILr~~ktP-FvVAANKIDrI~GW~~~e~~~fl~~ 694 (1145)
T TIGR00491 616 GLLFIDTPGHEAFTNLRKRGGALADLAILVVDINEGFKPQTEEALNILRSFKTP-FVVAANKIDRIPGWKSHEGRPFLES 694 (1145)
T ss_pred EEEEEECCCCHHHHCCCCCCCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCCCCCCCCCCCCCHHHHH
T ss_conf 015860786234422010010363011013410269840348999996128987-2895033055889645488516666
Q ss_pred -----------HHHHCCCCCCE-EEEEEEEEE-----------EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC---
Q ss_conf -----------21101232100-111014532-----------2102331146764114445652123320344310---
Q gi|254780263|r 142 -----------LLDISEYEIRD-LLKEHKYSD-----------DTPIIRGSALCALQGTNKELGEDSIHALMKAVDT--- 195 (392)
Q Consensus 142 -----------~~~~i~~~i~~-~l~~~~~~~-----------~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~--- 195 (392)
..+.+.+.+-. -|.+.||+. .+-+||+||++| ++++.||-.|.-
T Consensus 695 ~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tG----------EGIpelL~~l~GLAQ 764 (1145)
T TIGR00491 695 YEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTG----------EGIPELLLILAGLAQ 764 (1145)
T ss_pred HHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCC----------CCHHHHHHHHHHHHH
T ss_conf 5411167886688778988730221125887122552000011368988665678----------974899999988888
Q ss_pred -CCCCCC-CCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCC
Q ss_conf -252222-100001100000001355445430148742453489679995068743212541210
Q gi|254780263|r 196 -HIPTPQ-RSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVE 258 (392)
Q Consensus 196 -~~~~p~-~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~ 258 (392)
|+...- -..++|.|=.|-+|=--.|-|..+=--++-|++|+||.+.+...+. ...++|++|-
T Consensus 765 ~YL~~~Lkl~~eG~AkGtiLEVKEe~GLG~T~DaviYdGilk~~D~iv~~~~d~-vivT~vkAlL 828 (1145)
T TIGR00491 765 KYLEEKLKLEVEGPAKGTILEVKEEKGLGVTIDAVIYDGILKKGDIIVLAGKDD-VIVTRVKALL 828 (1145)
T ss_pred HHHHHHCCEEECCCCCEEEEEEEEECCCCCEEEEEEECCEECCCCEEEEECCCC-CEEEEEEEEC
T ss_conf 998852674222786515898785068971699999557712078899813898-0576678634
No 80
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=99.90 E-value=2.1e-23 Score=164.22 Aligned_cols=235 Identities=27% Similarity=0.340 Sum_probs=164.7
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHH
Q ss_conf 0388279999904689887899999987644420013126868698629206378999821990--89998478730246
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKR--FYSHIDCPGHADYV 85 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~ 85 (392)
..+|.+ +.+.||+|||||+|++.+-...-. +-..-|+|..++..+.+.++. .++|+|+|||+.|.
T Consensus 87 ~~~pp~-~~~~gh~dhg~~~ll~~~~~~~~~------------~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f~ 153 (594)
T TIGR00487 87 VPRPPV-VTIMGHVDHGKTSLLDSIRKTKVA------------AGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAFT 153 (594)
T ss_pred HCCCCE-EEEEECCCCCCHHHHHHHHHCCCC------------CCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHHH
T ss_conf 024763-688512355403456555410000------------1113652010130456642884379984077536778
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE-EEEEEEEEEEE
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001-11014532210
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL-LKEHKYSDDTP 164 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~-l~~~~~~~~~p 164 (392)
.--.+|+...|.++++++|.+|++|||.|.+..++..++| +++++||+|..+.+ .+.++.++.++ +....|..+..
T Consensus 154 ~~~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p-~~~~~n~~d~p~~~--pd~~~~~~~~~g~~~~~wgg~~~ 230 (594)
T TIGR00487 154 LMRARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVP-LIVAVNKIDKPEAN--PDRVKQELSEYGLVPEDWGGDTI 230 (594)
T ss_pred HHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC--HHHHHHHHHHCCCCCHHCCCCEE
T ss_conf 7763376100157999841556423568876533330773-69986124676678--77899998751775011278346
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC--CCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 233114676411444565212332034431025--222210000110000000135544543014874245348967999
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI--PTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEI 242 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~--~~p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i 242 (392)
+++.|++.|. .+..|++.+.-.- .......++...-.+.+.+...|+|.+.+-.+.+|++++||.+..
T Consensus 231 ~~~~~~~~g~----------g~~~l~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~g~g~~~~~~~~~g~l~~gd~~~~ 300 (594)
T TIGR00487 231 FVPVSALTGD----------GIDELLDAILLQSEVEELKANPNGQASGTVLEAELDKGRGPVATVLVQSGTLRVGDSVVL 300 (594)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCEECCCEEEE
T ss_conf 8862001367----------657888888876434443203232222025641001365632456661472011641352
Q ss_pred EECCCCCCCEEEECCCCC-CCCCCCCCCCHHH
Q ss_conf 506874321254121001-2114432100136
Q gi|254780263|r 243 IGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNV 273 (392)
Q Consensus 243 ~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v 273 (392)
.+. ..+++.+... ...++.+.|.-.+
T Consensus 301 g~~-----~g~~~~~~~~~g~~~~~~~p~~~~ 327 (594)
T TIGR00487 301 GAA-----YGKVRALIDENGKSVKEAGPSKPV 327 (594)
T ss_pred ECC-----CCHHHHHHHHCCCHHHHCCCCCEE
T ss_conf 032-----110000120024211212765215
No 81
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=3e-22 Score=156.97 Aligned_cols=159 Identities=28% Similarity=0.344 Sum_probs=118.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---------H
Q ss_conf 2799999046898878999999876444200131268686986292063789998219908999847873---------0
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------A 82 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------~ 82 (392)
.++|+++|+.++|||||+.+|++.... .. ....|.|.+.-...+++++..+.|+||||- .
T Consensus 2 ~~~V~ivG~pN~GKSTL~N~l~g~~~~------~v-----s~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~ 70 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV------IV-----SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI 70 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE------EE-----CCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHH
T ss_conf 989999989999899999998389844------43-----4999915733289999999889998578842134421068
Q ss_pred HH--HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH-HHHHCCCCCCEEEEEEEE
Q ss_conf 24--677987740023314520123443321067788886318760233100233356122-211012321001110145
Q gi|254780263|r 83 DY--VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE-LLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 83 ~f--~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~-~~~~i~~~i~~~l~~~~~ 159 (392)
++ +..+...+..+|.+++|+||++++..|..+.+..+...+.| +++++||+|+++.++ ..+..+.++.+.+...
T Consensus 71 e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p-~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~-- 147 (174)
T cd01895 71 EKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL-- 147 (174)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECEECCCCCHHHHHHHHHHHHHHHCCC--
T ss_conf 899999999999842865899758989988999999999985998-69998567526764778999999999873416--
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 322102331146764114445652123320344310
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
...|++++||.+|. +++.|+++|.+
T Consensus 148 -~~~~ii~iSA~~g~----------Gi~~L~~~I~e 172 (174)
T cd01895 148 -DYAPIVFISALTGQ----------GVDKLFDAIDE 172 (174)
T ss_pred -CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf -89928999744798----------99999999998
No 82
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.87 E-value=3.1e-23 Score=163.16 Aligned_cols=90 Identities=33% Similarity=0.544 Sum_probs=84.6
Q ss_pred CCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 00011000000013554454301487424534896799950687432125412100121144321001366641124543
Q gi|254780263|r 204 LDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRA 283 (392)
Q Consensus 204 ~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~ 283 (392)
.|+||||||+++|+++|.|+|++|+|++|++++||++.++|.+ ..++|++||+|++++++|.|||+|+++|+|++..
T Consensus 1 ~dkPlRmpId~vf~i~G~GtVvtG~v~~G~i~~gd~v~i~P~~---~~~~VksI~~~~~~~~~a~aGd~v~l~L~gi~~~ 77 (91)
T cd03693 1 TDKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG---VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCCEEEEEEEEEECCCCEEEEEEEEEECEEECCCEEEECCCC---CEEEEEEEEECCCCCCEECCCCEEEEEECCCCHH
T ss_conf 9987588998899729956999999811778579997727864---3379999999884958888998999998799899
Q ss_pred EEECHHEEECCCC
Q ss_conf 2202117732677
Q gi|254780263|r 284 DVPRGRVVCAPGS 296 (392)
Q Consensus 284 di~rGdvl~~~~~ 296 (392)
+++||||||++.+
T Consensus 78 ~i~rG~Vl~~~~n 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HCCCCCEEECCCC
T ss_conf 9267689955689
No 83
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.85 E-value=3.4e-22 Score=156.69 Aligned_cols=87 Identities=64% Similarity=1.010 Sum_probs=82.2
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
Q ss_conf 10000000135544543014874245348967999506874321254121001211443210013666411245432202
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPR 287 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~r 287 (392)
|||||+++|+++|.|+|++|+|++|++++||++.++|.. +..+++|+|||+|++++++|.|||+|+++|+|++.++++|
T Consensus 1 F~m~Id~~f~v~G~GtVvtGtv~~G~i~~gd~v~i~~~~-~~~~~~V~sIq~~~~~v~~a~aG~rv~l~l~gi~~~~i~r 79 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFG-ETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVER 79 (87)
T ss_pred CEEEEEEEEECCCEEEEEEEEECCCCEECCCEEEEECCC-CCCEEEEEEEHHCCCCCCCCCCCCEEEEEECCCCHHHCCC
T ss_conf 973681699669868999999552608479999997289-9718999990871943353798679999985888898377
Q ss_pred HHEEECCC
Q ss_conf 11773267
Q gi|254780263|r 288 GRVVCAPG 295 (392)
Q Consensus 288 Gdvl~~~~ 295 (392)
||+||+|+
T Consensus 80 G~vl~~pG 87 (87)
T cd03697 80 GMVLAKPG 87 (87)
T ss_pred CCEEECCC
T ss_conf 03994799
No 84
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.5e-20 Score=146.51 Aligned_cols=166 Identities=22% Similarity=0.266 Sum_probs=119.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH----HHHH----
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730----2467----
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA----DYVK---- 86 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~----~f~~---- 86 (392)
|+++|-...|||||..+|++.... -+.. .-|.|.|.-+..++++++.+.++||||-. ++.+
T Consensus 2 VaIvGrpNVGKStLfN~L~~~~~a------Iv~~-----~~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 70 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRDA------IVAD-----TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIRE 70 (429)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEE------ECCC-----CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 899999998789999998788617------6159-----89988773379999999079999898989874378999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 79877400233145201234433210677888863187602331002333561222110123210011101453221023
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
....++..+|.+++||||.+|+.++-.+.+..++..+-| +|+++||+|....++ ...+ +-.+|+.+ .+
T Consensus 71 q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~-vilviNK~D~~~~~~-------~~~e-f~~LG~~~---~i 138 (429)
T TIGR03594 71 QAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDA-------VAAE-FYSLGFGE---PI 138 (429)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHH-------HHHH-HHHHCCCC---EE
T ss_conf 999999867999999857768986799999999871997-899998346753145-------6999-99836898---68
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCC---CCCCCCCCEECC
Q ss_conf 31146764114445652123320344310252222---100001100000
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ---RSLDAPFLMHIE 213 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~---~~~~~p~r~~I~ 213 (392)
++||..+. ++..|++.+...+|... ...+.++++.|-
T Consensus 139 ~iSA~h~~----------Gi~~L~~~i~~~l~~~~~~~~~~~~~iriaiv 178 (429)
T TIGR03594 139 PISAEHGR----------GIGDLLDAILELLPEEEEEEEEEDGPIKIAII 178 (429)
T ss_pred EEEECCCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 87420467----------99999999996588665554345565269997
No 85
>pfam03143 GTP_EFTU_D3 Elongation factor Tu C-terminal domain. Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA and binding to EF-Ts pfam00889.
Probab=99.83 E-value=7.1e-20 Score=142.30 Aligned_cols=96 Identities=50% Similarity=0.889 Sum_probs=90.9
Q ss_pred CCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEE-ECCCHHHHCCCCEEEEEEEECCCEEECCCCEEE
Q ss_conf 7763000168999710567875555115978999954147779999-618955707897699999977817754698499
Q gi|254780263|r 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRII-LSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFS 374 (392)
Q Consensus 296 ~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~-~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfi 374 (392)
++.++++|+|++++|+.+++++.+++.++|+++++|.++++++++. ..++++.+++||.+.++++|.+|+|+|+++||+
T Consensus 1 p~k~~~~F~AqvyiL~~~eggr~tpi~~~y~~~~~~~t~~~~~~i~~~~~~~~~v~pGd~a~v~i~l~~p~~ie~~~rF~ 80 (97)
T pfam03143 1 PIKPHTKFKAQVYILNHPEGGGYTPFFDGYTPQFYCRTTDVTGKIKVLEEGPEFVMPGDNAIVTVELIKPIAVEPGGRFA 80 (97)
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCEEECCEEEEEEEEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCEEEECCCEEE
T ss_conf 98231199999999988978997647046277999998888888877388970870799569999979749996176299
Q ss_pred EEECCEEEEEEEEEEEE
Q ss_conf 99899699989995531
Q gi|254780263|r 375 MREGGKTVGAGLILEII 391 (392)
Q Consensus 375 lRd~~~tig~G~I~~v~ 391 (392)
|||+|+|||+|.|++|+
T Consensus 81 iRe~g~Tv~~G~V~~vl 97 (97)
T pfam03143 81 IREGGRTVAVGVVTEVL 97 (97)
T ss_pred EEECCEEEEEEEEEEEC
T ss_conf 99899399999999809
No 86
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.83 E-value=4e-20 Score=143.84 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=125.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH-----HHHHH-
Q ss_conf 999990468988789999998764442001312686869862920637899982199089998478730-----24677-
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA-----DYVKN- 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~-----~f~~~- 87 (392)
.|+++|-...|||||..+|++... +-++.. -|.|.|.-+..+++.++.++|+||||-. .|.+.
T Consensus 3 ~VaIvGrpNvGKStLfN~l~~~~~------aIv~~~-----~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i 71 (438)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRD------AIVADT-----PGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQM 71 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCE------EEECCC-----CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 899989999878999999868861------871598-----999847158999999928999989798988820799999
Q ss_pred ---HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf ---98774002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 88 ---MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 88 ---mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
...++..+|.+++||||.+|+.++-.+.+..++..+-| +|+++||+|....+. ...++ -.+|+.+
T Consensus 72 ~~q~~~ai~~aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~-vilviNK~D~~~~~~-------~~~ef-~~LGf~~--- 139 (438)
T PRK00093 72 REQALLAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGKKMEA-------DAYEF-YSLGLGE--- 139 (438)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHH-------HHHHH-HHHCCCC---
T ss_conf 99999999858999999837768987899999999973997-899997556632034-------59999-9836898---
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCC
Q ss_conf 23311467641144456521233203443102522221000011000000
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEG 214 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~~ 214 (392)
.+++||..+. ++..|++.+...++..+...+.++|+.|-.
T Consensus 140 ~i~iSA~h~~----------Gi~~L~~~i~~~l~~~~~~~~~~iriaiiG 179 (438)
T PRK00093 140 PYPISAEHGR----------GIGDLLDAILELLPEEEEEEEDPIKIAIIG 179 (438)
T ss_pred EEEEEECCCC----------CHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf 1888530566----------989999999854885543445560599955
No 87
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.82 E-value=3.8e-20 Score=143.97 Aligned_cols=168 Identities=17% Similarity=0.210 Sum_probs=120.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC----HHHHHH--
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873----024677--
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH----ADYVKN-- 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH----~~f~~~-- 87 (392)
.|||+|..+-|||||..+|++.... -.+. .-|+|.|--+...+|.++.|.++||+|- ..|...
T Consensus 281 ~VAIVGRPNVGKSTLFNRL~g~r~A------IV~d-----~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~~~~~~~~~I~ 349 (714)
T PRK09518 281 TVAIVGRPNVGKSTLVNRILGRREA------VVED-----TPGVTRDRVSYDAEWAGRDFKLVDTGGWEADAEGIEAAIA 349 (714)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEE------EECC-----CCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 7999899987689999886288416------8469-----8998837555799999916999979999988326999999
Q ss_pred --HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf --987740023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 88 --MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 88 --mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
...++..||..++|||+..|+.+.-.+.+.+++..+.| +++++||+|..+.+. ...+| -.+|+.+ .
T Consensus 350 ~Q~~~Ai~eADlIlFVVD~~~Glt~~D~~ia~~LRk~~Kp-vilvvNK~D~~~~e~-------~~~ef-~~LG~~e---~ 417 (714)
T PRK09518 350 SQAEIAMTLADAIVFVVDGQVGMTSTDEVIARMLQRAGKP-VVLVANKIDDQASEY-------DVAEF-WKLGLGE---P 417 (714)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHH-------HHHHH-HHCCCCC---C
T ss_conf 9999999968999999968979897899999999856998-899998978876401-------29999-9659999---6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC---CCCCCCCEECCC
Q ss_conf 3311467641144456521233203443102522221---000011000000
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR---SLDAPFLMHIEG 214 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~---~~~~p~r~~I~~ 214 (392)
+|+||..|. ++..|++.+...+|..+. ..+.|.|+.|-.
T Consensus 418 ~~ISA~Hg~----------G~~dLld~i~~~l~~~~~~~~~~~~~~rIAIIG 459 (714)
T PRK09518 418 YSISAMHGR----------GVADLLDVVLDSLKQHERTSGYLSGLRRVALVG 459 (714)
T ss_pred EEEECCCCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
T ss_conf 898473578----------989999999965888875434346773588866
No 88
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.81 E-value=6.7e-20 Score=142.46 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=120.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC----HHHHH---
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873----02467---
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH----ADYVK--- 86 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH----~~f~~--- 86 (392)
-||++|-..-|||||..+|++.... -.+. .-|.|.|.-+..++|.++.+.++||||- .++.+
T Consensus 40 iVaIvGRPNVGKStLFNrL~~~~~A------IV~d-----~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~ 108 (474)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRREA------VVED-----IPGVTRDRVSYDAEWNGRRFVVQDTGGWEPDAKGLQALVA 108 (474)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEE------EECC-----CCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 8999899998889999998688638------8059-----8998808636899999928999979999997478999999
Q ss_pred -HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf -7987740023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 87 -NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 87 -~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
....++..||..++||||.+|+.+.-.+.+.+++..+-| +++++||+|....+. ...++ -.+|+.+ .
T Consensus 109 ~q~~~ai~eaD~IlfVvD~~~glt~~D~eia~~LRk~~kp-viLVvNK~D~~~~~~-------~~~ef-y~LGf~~---~ 176 (474)
T PRK03003 109 EQAEVAMRTADAVLFVVDATVGATATDEAVARLLRRSGKP-VFLAANKVDSERGEA-------DAAAL-WSLGLGE---P 176 (474)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHH-------HHHHH-HHHCCCC---E
T ss_conf 9999999869999999968989887899999998753997-799867556621023-------48999-9757998---6
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC---CCCCCCCCCEECCC
Q ss_conf 33114676411444565212332034431025222---21000011000000
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP---QRSLDAPFLMHIEG 214 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p---~~~~~~p~r~~I~~ 214 (392)
+++||..|. ++..|++.+.+.+|.. ....+.|.|+.|-.
T Consensus 177 i~ISA~Hg~----------Gi~dLld~i~~~l~~~~~~~~~~~~~~rIAIvG 218 (474)
T PRK03003 177 HPVSALHGR----------GVADLLDAVLAALPEVPEVGSAVGGPRRVALVG 218 (474)
T ss_pred EEEEHHCCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC
T ss_conf 996020378----------979999999974877664433457762799980
No 89
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=9.5e-20 Score=141.50 Aligned_cols=155 Identities=23% Similarity=0.363 Sum_probs=105.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC-------------
Q ss_conf 9999046898878999999876444200131268686986292063789998219908999847873-------------
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH------------- 81 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH------------- 81 (392)
||++|+.++|||||+.+|++... ...+. ..-|.|.+..+ |.+ +..+.|+||||-
T Consensus 2 IaivG~pN~GKSTL~N~L~~~~~-----~~~vs-----~~~gtTr~i~~--~~~-~~~~~~vDtPG~g~~~~~~~~~~~~ 68 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-----LARTS-----KTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKW 68 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-----EEEEE-----CCCCEEEEEEE--EEE-CCEEEEEECCCCHHCCCCHHHHHHH
T ss_conf 89998999999999999968996-----27860-----78977852058--853-8779999657840101687799999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 02467798774002331452012344332106778888631876023310023335612221101232100111014532
Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
...+.+.+.....+|.+++|+||..|+.+|.++.+..+...+.| +++++||+|+++.+++.+..+ ++...+... ..
T Consensus 69 ~~~~~~~l~~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp-~iiVlNKiDlv~~~~~~~~~~-~~~~~l~~~--~~ 144 (170)
T cd01876 69 GKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALK-EIKKELKLF--EI 144 (170)
T ss_pred HHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEEEECCCHHHHHHHHH-HHHHHHHCC--CC
T ss_conf 99999999840633499999963223748689999999876998-799998675378778999999-999987421--79
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 21023311467641144456521233203443102
Q gi|254780263|r 162 DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 162 ~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
..|++++||.+| .+++.|++.|.++
T Consensus 145 ~~~ii~iSA~~g----------~gi~~L~~~I~~~ 169 (170)
T cd01876 145 DPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred CCEEEEEECCCC----------CCHHHHHHHHHHH
T ss_conf 983999988999----------7799999999985
No 90
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.81 E-value=8.6e-21 Score=147.99 Aligned_cols=82 Identities=28% Similarity=0.450 Sum_probs=77.7
Q ss_pred CCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 11000000013554454301487424534896799950687432125412100121144321001366641124543220
Q gi|254780263|r 207 PFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVP 286 (392)
Q Consensus 207 p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~ 286 (392)
||||||+++|+ |.|++++|||+||++++||++.++|.+ ..++|++|+++++++++|.|||+|+++|+|++..|++
T Consensus 1 PlR~pi~dv~k--g~G~vV~G~vesG~v~~Gd~v~i~P~~---~~~~Vk~I~~~~~~v~~A~aGd~V~l~L~gvd~~~i~ 75 (82)
T cd04089 1 PLRLPIIDKYK--DMGTVVLGKVESGTIKKGDKLLVMPNK---TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDIS 75 (82)
T ss_pred CEEEEEEEEEE--CCCEEEEEEEEEEEECCCCEEEEECCC---CEEEEEEEEECCEEECEECCCCCEEEEECCCCHHHCC
T ss_conf 97826878992--898899999936778299999995899---8899999999997958886997326888488888447
Q ss_pred CHHEEEC
Q ss_conf 2117732
Q gi|254780263|r 287 RGRVVCA 293 (392)
Q Consensus 287 rGdvl~~ 293 (392)
|||+||+
T Consensus 76 rG~vlcs 82 (82)
T cd04089 76 PGFVLCS 82 (82)
T ss_pred CCCEECC
T ss_conf 8879959
No 91
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.81 E-value=7.9e-21 Score=148.22 Aligned_cols=83 Identities=37% Similarity=0.663 Sum_probs=79.2
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
Q ss_conf 10000000135544543014874245348967999506874321254121001211443210013666411245432202
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPR 287 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~r 287 (392)
|||||+++|+++|+|+|++|+|+||++++||++.++|.+ ..++|++||+|++++++|.|||+|+++|+|++..|++|
T Consensus 1 fr~~Id~~F~i~G~GtVvtGtv~sG~i~~gd~l~i~P~~---~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~di~r 77 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG---EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLER 77 (83)
T ss_pred CEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEECCCC---CEEEEEEEEECCCEECEECCCCEEEEEEECCCHHHCCC
T ss_conf 984886899818957999999967985699999997877---33899999989959688979987999975897673586
Q ss_pred HHEEEC
Q ss_conf 117732
Q gi|254780263|r 288 GRVVCA 293 (392)
Q Consensus 288 Gdvl~~ 293 (392)
||+||+
T Consensus 78 G~vl~s 83 (83)
T cd03696 78 GDVLSS 83 (83)
T ss_pred CCEEEC
T ss_conf 789919
No 92
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.81 E-value=1.2e-20 Score=147.13 Aligned_cols=83 Identities=31% Similarity=0.593 Sum_probs=79.1
Q ss_pred CCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 11000000013554454301487424534896799950687432125412100121144321001366641124543220
Q gi|254780263|r 207 PFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVP 286 (392)
Q Consensus 207 p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~ 286 (392)
||||||+++|+.+| |++++|||+||++++||++.++|.+ ..++|++|+.+++++++|.|||+|+++|+|++..|++
T Consensus 1 P~R~pI~~v~~~~g-G~vv~G~v~sG~i~~Gd~v~i~P~~---~~~~VksI~~~~~~~~~A~aG~~V~l~L~gid~~~i~ 76 (83)
T cd03698 1 PFRLPISDKYKDQG-GTVVSGKVESGSIQKGDTLLVMPSK---ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDIS 76 (83)
T ss_pred CEEEEEEEEEECCC-CCEEEEEEEECEECCCCEEEEECCC---CEEEEEEEEECCEEECEECCCCEEEEEECCCCHHHCC
T ss_conf 97989974798699-7399999902587289999997899---8899999999991729888999799998489899947
Q ss_pred CHHEEEC
Q ss_conf 2117732
Q gi|254780263|r 287 RGRVVCA 293 (392)
Q Consensus 287 rGdvl~~ 293 (392)
|||+||+
T Consensus 77 rG~vlcs 83 (83)
T cd03698 77 PGDVLCS 83 (83)
T ss_pred CCCEEEC
T ss_conf 9889949
No 93
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=99.81 E-value=1.2e-19 Score=140.90 Aligned_cols=172 Identities=21% Similarity=0.292 Sum_probs=119.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC--------HHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873--------0246
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH--------ADYV 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH--------~~f~ 85 (392)
-||++|-..+|||||+.+|++..-.. +. ..-|-|.+.-...+.+++..+.|+||||- +.+.
T Consensus 10 ~VaivG~PNvGKSTL~N~l~~~k~si------VS-----~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~ 78 (296)
T PRK00089 10 FVAIVGRPNVGKSTLLNALVGQKISI------VS-----PKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMN 78 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEE------EC-----CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf 99999899988899999996896176------14-----95998728389999979979999989986674677878999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 77987740023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
+....++..+|.+++|+||.+++..|.++.+..++..+.| +++++||+|+++.++..+.+. ++.+.+ .|. .+
T Consensus 79 ~~~~~ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp-~ilviNKiDlv~k~~l~~~~~-~l~~~~---~f~---~i 150 (296)
T PRK00089 79 KAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVDKEELLPLLE-ELSELM---DFA---EI 150 (296)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEHHHHCCHHHHHHHHH-HHHHHC---CCC---EE
T ss_conf 9999999759999999857889898899999988874998-899954788428988999999-998537---976---59
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC------CCCCCCCCCCEECCC
Q ss_conf 3311467641144456521233203443102522------221000011000000
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPT------PQRSLDAPFLMHIEG 214 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~------p~~~~~~p~r~~I~~ 214 (392)
+++||.++ ++++.|++.|.++.|. +....|.+.++.+.+
T Consensus 151 f~iSA~~~----------~gi~~L~~~l~~~lp~~~~~y~~d~~Td~~~~~~v~E 195 (296)
T PRK00089 151 VPISALKG----------DNVDELLDLIAKYLPEGPPLYPEDQITDRPERFLAAE 195 (296)
T ss_pred EEEECCCC----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99967788----------8989999999986798865687301457848899999
No 94
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.79 E-value=3.9e-19 Score=137.68 Aligned_cols=156 Identities=20% Similarity=0.174 Sum_probs=107.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC----HHH----
Q ss_conf 799999046898878999999876444200131268686986292063789998219908999847873----024----
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH----ADY---- 84 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH----~~f---- 84 (392)
.+|+++|+.++|||||+.+|++.. .+ .+. ..-|-|.+.....+.++++.+.|+||||- ...
T Consensus 4 ~~V~ivG~pN~GKSsL~N~L~~~~--~a----~vs-----~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 72 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQK--IS----IVS-----PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERM 72 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--EE----EEC-----CCCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 689999999999999999995897--03----323-----8898263442368984997899995898665145677899
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 67798774002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.+...+.+..+|.+++|+||++|...+..+.+..++..+.| +++++||+|+++.++.......+..+.. ...+
T Consensus 73 ~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~-~iivlNK~Dl~~~~~~~~~~~~~~~~~~------~~~~ 145 (168)
T cd04163 73 VKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPLLEKLKELG------PFAE 145 (168)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECEEECCCHHHHHHHHHHHHHHC------CCCC
T ss_conf 99999865136558999978989866779999999980998-5999978870478778999999999618------9996
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 23311467641144456521233203443102
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
++++||.+|. ++..|++.|.++
T Consensus 146 vi~iSA~~g~----------Gid~L~~~i~~~ 167 (168)
T cd04163 146 IFPISALKGE----------NVDELLEEIVKY 167 (168)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHH
T ss_conf 8999777896----------999999999953
No 95
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.79 E-value=3.7e-20 Score=144.04 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=81.8
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEC-CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 10000000135544543014874245348967999506-87432125412100121144321001366641124543220
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM-GGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVP 286 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~-~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~ 286 (392)
+||+|+++|.++|+|+|++|++.+|++++||++.++|. ++++.+++|+|||+|++++++|.|||+++++|++++.++++
T Consensus 1 ~~~~ID~vf~v~G~GtVVtGtv~~G~i~~gd~v~i~P~~~G~f~~v~VrsIq~~~~~v~~a~aG~~~~~~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CCCCCEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECCCCCCEECCCCEEEEEECCCCHHHCC
T ss_conf 95653137986985689899984571538999999216789667789988998882978976998988998699999906
Q ss_pred CHHEEEC
Q ss_conf 2117732
Q gi|254780263|r 287 RGRVVCA 293 (392)
Q Consensus 287 rGdvl~~ 293 (392)
||++|.+
T Consensus 81 rG~VL~s 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CCCEEEC
T ss_conf 7669969
No 96
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=1.5e-19 Score=140.27 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=108.5
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC-EEEEEEECCCC-------HHHHHHH
Q ss_conf 990468988789999998764442001312686869862920637899982199-08999847873-------0246779
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK-RFYSHIDCPGH-------ADYVKNM 88 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~iiD~PGH-------~~f~~~m 88 (392)
++|+.++|||||+.+|++..... . ....|.|.+.....+.+.+ +.+.|+||||. ..+....
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~------v-----s~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~ 69 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------V-----SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA 69 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCE------E-----CCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 91979989999999995899610------1-----698998656458999954786599972798522231016899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 87740023314520123443321067788886318760233100233356122211012321001110145322102331
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
...+..+|.+++||||+++...+..+++..+...+.| +++++||+|+++.++..+..+ ........ ....|++++
T Consensus 70 ~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~~~p-~i~v~NK~D~~~~~~~~~~~~-~~~~~~~~---~~~~~i~~i 144 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-LRLLILLL---LLGLPVIAV 144 (163)
T ss_pred HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEECEECCCHHHHHHHHH-HHHHHHHH---CCCCEEEEE
T ss_conf 9999868989999878999755669999999971974-278853420678789999999-99999876---799859999
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780263|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
||.+|. ++..|++.+.+
T Consensus 145 SA~~g~----------gi~~L~~~i~e 161 (163)
T cd00880 145 SALTGE----------GIDELREALIE 161 (163)
T ss_pred ECCCCC----------CHHHHHHHHHH
T ss_conf 789897----------99999999995
No 97
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=6.2e-19 Score=136.47 Aligned_cols=168 Identities=21% Similarity=0.250 Sum_probs=119.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH-----HHHH-
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787302-----4677-
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD-----YVKN- 87 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~-----f~~~- 87 (392)
.||++|..+=|||||..+|++..... .+- .-|.|.|--|...+|.++.+.+|||+|-.+ |.+.
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r~AI------V~D-----~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i 73 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRRIAI------VSD-----TPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELI 73 (444)
T ss_pred EEEEECCCCCCHHHHHHHHHCCEEEE------EEC-----CCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 89998999875899998875770267------606-----9997557754506983860799978997768812899999
Q ss_pred ---HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf ---98774002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 88 ---MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 88 ---mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
+..++..||+.|+|||+.+|+.++-.+.+.+++..+.| +|+++||+|..+.++ ...++ -.+|+.+
T Consensus 74 ~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e~-------~~~ef-yslG~g~--- 141 (444)
T COG1160 74 REQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAEE-------LAYEF-YSLGFGE--- 141 (444)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCHHHH-------HHHHH-HHCCCCC---
T ss_conf 99999999767999999848878997899999999853998-899997666730456-------48999-8647898---
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC-CC---CCCCCEECCC
Q ss_conf 23311467641144456521233203443102522221-00---0011000000
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR-SL---DAPFLMHIEG 214 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~-~~---~~p~r~~I~~ 214 (392)
.+|+||..|. ++..|++.+...+|.++. .. +.|.++.|-.
T Consensus 142 ~~~ISA~Hg~----------Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiG 185 (444)
T COG1160 142 PVPISAEHGR----------GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIG 185 (444)
T ss_pred CEEEEHHHCC----------CHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEE
T ss_conf 2684255356----------9899999999756774334443567750899992
No 98
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.76 E-value=4.9e-18 Score=130.86 Aligned_cols=93 Identities=39% Similarity=0.747 Sum_probs=88.9
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEE
Q ss_conf 63000168999710567875555115978999954147779999618955707897699999977817754698499998
Q gi|254780263|r 298 QEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMRE 377 (392)
Q Consensus 298 ~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd 377 (392)
++.++|+|++++|+.+++++.+++..+|+|++|+.+++++|++.+.++.+.+.|||.+.+.++|.+|+++++++||.||+
T Consensus 1 k~h~~f~A~vYvLtkeEGGR~~pf~~~y~pq~f~rT~Dvtg~i~l~~~~~mvmPGd~~~~~~~L~~p~~le~g~rFtiRE 80 (93)
T cd03706 1 KPHDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTLRD 80 (93)
T ss_pred CCCCEEEEEEEEECHHHCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCEEECCCCCEEEEEEECCCEECCCCCEEEEEE
T ss_conf 99778999999971888888788646982179998167246888479965865788289999977606115998188935
Q ss_pred CCEEEEEEEEEEE
Q ss_conf 9969998999553
Q gi|254780263|r 378 GGKTVGAGLILEI 390 (392)
Q Consensus 378 ~~~tig~G~I~~v 390 (392)
+|+|||.|+|++.
T Consensus 81 gg~TVg~GvVte~ 93 (93)
T cd03706 81 GNRTIGTGLVTDT 93 (93)
T ss_pred CCEEEEEEEEECC
T ss_conf 9998998999569
No 99
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=3.6e-18 Score=131.69 Aligned_cols=148 Identities=22% Similarity=0.243 Sum_probs=106.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH----HHHHHHH--
Q ss_conf 9990468988789999998764442001312686869862920637899982199089998478730----2467798--
Q gi|254780263|r 16 STIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA----DYVKNMI-- 89 (392)
Q Consensus 16 ~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~----~f~~~mi-- 89 (392)
|++|..++|||||+.+|++.... .... .-|.|.+.-+..++++++.+.|+||||.. .+.+.|.
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~------ivs~-----~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~ 69 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA------IVED-----TPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQ 69 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCE------EEEC-----CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 90489998899999999588753------5407-----999356678999999998899985787555660678999999
Q ss_pred --HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf --774002331452012344332106778888631876023310023335612221101232100111014532210233
Q gi|254780263|r 90 --TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 90 --~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
..+..+|.+++|+||.+|+..+..+.+..++..+.| +++++||+|+++.++... ++.+ .++. ++++
T Consensus 70 ~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~~kp-~i~v~NK~D~~~~~~~~~----~~~~----l~~~---~~i~ 137 (157)
T cd01894 70 AELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDEAA----EFYS----LGFG---EPIP 137 (157)
T ss_pred HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHH----HHHH----CCCC---CEEE
T ss_conf 99999865907999989999998999999999984798-099997871658645699----9996----5999---7599
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 11467641144456521233203443102
Q gi|254780263|r 168 GSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 168 ~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
+||.+|. +++.|++.|.+.
T Consensus 138 iSA~~g~----------Gid~L~~~I~~~ 156 (157)
T cd01894 138 ISAEHGR----------GIGDLLDAILEL 156 (157)
T ss_pred EEEECCC----------CHHHHHHHHHHH
T ss_conf 9965894----------999999999965
No 100
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=99.75 E-value=8e-18 Score=129.56 Aligned_cols=153 Identities=27% Similarity=0.333 Sum_probs=117.3
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH------
Q ss_conf 38827999990468988789999998764442001312686869862920637899982199089998478730------
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA------ 82 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~------ 82 (392)
..+.++||++|-..+|||||+.+|++.-.. -++.. -|.|.|.-...|+|+++.|.|+||+|-+
T Consensus 169 ~~~~iriaiiGrpNvGKStl~N~ll~~~r~------ivs~~-----~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~ 237 (438)
T PRK00093 169 EEDPIKIAIIGRPNVGKSTLINALLGEERV------IVSDI-----AGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVT 237 (438)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH------HCCCC-----CCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCC
T ss_conf 455605999558886556788876543332------04799-----9851123267999899679999898987656421
Q ss_pred ----HH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEEEEE
Q ss_conf ----24-67798774002331452012344332106778888631876023310023335612-2211012321001110
Q gi|254780263|r 83 ----DY-VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDLLKE 156 (392)
Q Consensus 83 ----~f-~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~l~~ 156 (392)
.| +..+++.+..+|+++||+||.+|+..|-..-+.++...|-+ +|+++||+|+++.+ +..+....++...|..
T Consensus 238 ~~iE~~s~~~t~~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~-~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~ 316 (438)
T PRK00093 238 EGIEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVEKDSKTMEEVKEELRRRLPF 316 (438)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECHHCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 378899999999998644669999976658848889999999981996-6999970222566389999999999975612
Q ss_pred EEEEEEEECCCCEEEEEEEC
Q ss_conf 14532210233114676411
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQG 176 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~ 176 (392)
...+|++++||..+...
T Consensus 317 ---~~~~pIvfiSA~~g~gi 333 (438)
T PRK00093 317 ---LDFAPIVFISALTGQGV 333 (438)
T ss_pred ---CCCCCEEEEECCCCCCH
T ss_conf ---58987799851477799
No 101
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.75 E-value=1.5e-18 Score=134.07 Aligned_cols=135 Identities=24% Similarity=0.228 Sum_probs=93.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC----CHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787----302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG----HADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG----H~~f~~~mi 89 (392)
+|+++|..++|||||+.+|.+..-. ...|.. -.++..|||||| |+.|.+.|+
T Consensus 3 kVaivGrpNvGKSTLlN~L~g~~i~----------------~~K~qt--------t~~~~~~IDTPG~~~~~~~~~~~~~ 58 (143)
T pfam10662 3 KIMLIGRSGCGKTTLTQALNGEELK----------------YKKTQA--------IEFSDNMIDTPGEYLENRRFYSALI 58 (143)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEE----------------ECCCEE--------EEECCCEEECCCCCCCCHHHHHHHH
T ss_conf 5999899999999999997599445----------------178707--------9855748999876656289999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 77400233145201234433210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
.++..||..++|+||++...... ..+++.++.| +|+++||+|+++.++..+.+ ++++++.++. .++|+|
T Consensus 59 ~~~~daDvil~vvDa~~~~~~~~---~~~~~~~~kp-vIlViNKiD~~~~~~~l~~~----~~~~~~~~~~---~i~~iS 127 (143)
T pfam10662 59 VTAADADVIALVQDATEPWSVFP---PGFASMFNKP-VIGIITKIDLAKDEANIEMV----EEWLNNAGAE---KIFEVS 127 (143)
T ss_pred HHHHHCCEEEEEEECCCCCCCCC---HHHHHHCCCC-EEEEEECCCCCCCHHHHHHH----HHHHHHCCCC---EEEEEE
T ss_conf 99964999999987788667568---7789754798-89999802245756678999----9999758998---799988
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 467641144456521233203443
Q gi|254780263|r 170 ALCALQGTNKELGEDSIHALMKAV 193 (392)
Q Consensus 170 a~~g~~~~n~~~~~~~~~~Ll~~i 193 (392)
|.+|. ++..|++.|
T Consensus 128 A~~g~----------Gid~L~~~l 141 (143)
T pfam10662 128 AVTNE----------GIDELFAYL 141 (143)
T ss_pred CCCCC----------CHHHHHHHH
T ss_conf 98998----------999999997
No 102
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.74 E-value=5.5e-18 Score=130.57 Aligned_cols=147 Identities=21% Similarity=0.293 Sum_probs=99.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC----------
Q ss_conf 8279999904689887899999987644420013126868698629206378999821990899984787----------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---------- 80 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---------- 80 (392)
+...||++|...+|||||+.+|++.-. . +.+. ...|.|.+..+ |.. +..+.|+||||
T Consensus 17 ~~p~IaivGrpNvGKSTL~N~L~g~k~-~----a~vs-----~~pGtTr~i~~--~~~-~~~~~lvDtpGyG~~~~~~~~ 83 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKK-L----ARTS-----KTPGRTQLINF--FEV-NDGFRLVDLPGYGYAKVSKEE 83 (179)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-E----EEEC-----CCCCEEEECCE--EEE-CCCEEEEECCCHHHCCCCHHH
T ss_conf 897899986999888999999868985-5----8970-----89973660232--010-473699977760211278888
Q ss_pred CHHHHHHH---HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf 30246779---877400233145201234433210677888863187602331002333561222110123210011101
Q gi|254780263|r 81 HADYVKNM---ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH 157 (392)
Q Consensus 81 H~~f~~~m---i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~ 157 (392)
+..+...+ +.....++.+++|+||..|+..|-.+.+.+++..+.| +++++||+|+++.+++.+.. .++.+.|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp-~iivlNK~Dll~~~~~~~~~-~~i~~~l~~~ 161 (179)
T TIGR03598 84 KEKWQKLIEEYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIP-VLIVLTKADKLKKSERNKQL-KKIKKALKKD 161 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHHHH-HHHHHHHHCC
T ss_conf 999999999999998864302898743779989999999999975998-89999781306989999999-9999997336
Q ss_pred EEEEEEECCCCEEEEEE
Q ss_conf 45322102331146764
Q gi|254780263|r 158 KYSDDTPIIRGSALCAL 174 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~ 174 (392)
....|++++||+++.
T Consensus 162 --~~~~~v~~ISA~~g~ 176 (179)
T TIGR03598 162 --ADDPSVQLFSSLKKT 176 (179)
T ss_pred --CCCCCEEEEECCCCC
T ss_conf --688948999799983
No 103
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.74 E-value=7.7e-18 Score=129.66 Aligned_cols=159 Identities=18% Similarity=0.250 Sum_probs=105.3
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC----------
Q ss_conf 2799999046898878999999876444200131268686986292063789998219908999847873----------
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------- 81 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------- 81 (392)
...||++|...+|||||+.+|++.-. .+.+.. .-|-|.+..+ ...+..+.|+||||.
T Consensus 24 ~p~VaivGrpNvGKSTL~N~L~g~k~-----~a~vs~-----~pgtTr~i~~---~~~~~~~~lvDtpGyG~a~~~~~~~ 90 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKN-----LARTSK-----TPGRTQLINF---FEVNDGLRLVDLPGYGYAKVSKEEK 90 (196)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-----EEEEEC-----CCCCEEEEEE---EECCCCEEEEECCCCCCCCCCHHHH
T ss_conf 96899984898889999999868973-----699747-----8886079888---7618833899379974132778788
Q ss_pred HHHHHHH---HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 0246779---8774002331452012344332106778888631876023310023335612221101232100111014
Q gi|254780263|r 82 ADYVKNM---ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 82 ~~f~~~m---i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
.++...+ +......+.++++|||+.|+..|.++-+.++...+.| +++++||+|+++..++..... ++.+.+...
T Consensus 91 ~~~~~~i~~yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p-~iivlNKiD~l~~~~~~~~~~-~i~~~l~~~- 167 (196)
T PRK00454 91 EKWQKLIEEYLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIP-VLIVLTKADKLKKGERKKLLK-KVKKALARF- 167 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-CEEEEECCHHCCHHHHHHHHH-HHHHHHHHC-
T ss_conf 89999999999962333638999971658988899999999862778-599998725169789999999-999997612-
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 532210233114676411444565212332034431025
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
....+++++||.+|. +++.|++.|..++
T Consensus 168 -~~~~~ii~ISA~~g~----------GI~eL~~~I~k~L 195 (196)
T PRK00454 168 -AADPEVLLFSSLKKT----------GIDELRAAIAKWL 195 (196)
T ss_pred -CCCCCEEEEECCCCC----------CHHHHHHHHHHHH
T ss_conf -589828999699997----------9899999999985
No 104
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.73 E-value=2.2e-17 Score=126.83 Aligned_cols=154 Identities=26% Similarity=0.315 Sum_probs=119.0
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH-----
Q ss_conf 038827999990468988789999998764442001312686869862920637899982199089998478730-----
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA----- 82 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~----- 82 (392)
...+.+++|++|-..+|||||+.+|++.-.. -++. .-|.|.|.-...++++++.|.|+||||-+
T Consensus 168 ~~~~~iriaivGrPNvGKSTl~N~ll~~~r~------ivs~-----~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~ 236 (429)
T TIGR03594 168 EEDGPIKIAIIGRPNVGKSTLVNALLGEERV------IVSD-----IAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKV 236 (429)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH------HCCC-----CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCC
T ss_conf 4556526999748876546777776543332------1479-----9986310268799999908999989887636642
Q ss_pred -----HH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf -----24-677987740023314520123443321067788886318760233100233356122211012321001110
Q gi|254780263|r 83 -----DY-VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 83 -----~f-~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
.| +..+++.+..+|+++||+||.+|+..|-..-+.++...|.+ +|+++||+|+++..+.++..+.++...+..
T Consensus 237 ~~~~e~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~-~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~ 315 (429)
T TIGR03594 237 TEGIEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAGKA-LIIVVNKWDLVKDEKTREEFKKELRRKLPF 315 (429)
T ss_pred CHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3047799999999998744779999976658848889999989873997-699997223037999999999999985623
Q ss_pred EEEEEEEECCCCEEEEEEEC
Q ss_conf 14532210233114676411
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQG 176 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~ 176 (392)
. ..+|++++||.++...
T Consensus 316 ~---~~~pI~fiSA~~g~gi 332 (429)
T TIGR03594 316 L---DFAPIVFISALTGQGV 332 (429)
T ss_pred C---CCCCEEEEECCCCCCH
T ss_conf 6---8986899734577899
No 105
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=99.72 E-value=3.7e-17 Score=125.48 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=113.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH--------
Q ss_conf 827999990468988789999998764442001312686869862920637899982199089998478730--------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA-------- 82 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~-------- 82 (392)
..++||++|...+|||||+.+|++.-. ..++. .-|-|.|+-...|+++++.|.||||+|-+
T Consensus 210 ~~~rIAIvGrPNvGKStL~N~llg~~r------~ivs~-----~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~ 278 (474)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEER------SVVHD-----VAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASG 278 (474)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC------EEECC-----CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCC
T ss_conf 762799980899878899999858975------67458-----9985154405899999989999989876635533431
Q ss_pred --HH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf --24-677987740023314520123443321067788886318760233100233356122211012321001110145
Q gi|254780263|r 83 --DY-VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 83 --~f-~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
.| +..++.++..+|+++||+||.+|+..|-..-+.++...|-+ +|+++||+|+++.++... .+.++...|..
T Consensus 279 iE~~s~~rtl~aI~~advvilviDa~egit~QD~~Ia~~v~~~gk~-~IivvNKwDLv~~~~~~~-~~~~i~~~l~~--- 353 (474)
T PRK03003 279 HEFYASLRTHAAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDRRYY-LEREIDRELAQ--- 353 (474)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEECHHCCCHHHHHH-HHHHHHHHHHH---
T ss_conf 4589999999998733557999854658749999999999980995-799997144168678999-99999864554---
Q ss_pred EEEEECCCCEEEEEEEC
Q ss_conf 32210233114676411
Q gi|254780263|r 160 SDDTPIIRGSALCALQG 176 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~ 176 (392)
...+|++++||++|.+.
T Consensus 354 ~~~~piv~ISA~~g~~i 370 (474)
T PRK03003 354 VRWAPRVNISAKTGRAV 370 (474)
T ss_pred CCCCCEEEEEEECCCCH
T ss_conf 48985699981048798
No 106
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.72 E-value=8.1e-17 Score=123.35 Aligned_cols=87 Identities=23% Similarity=0.370 Sum_probs=77.4
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEEEECCCE
Q ss_conf 30001689997105678755551159789999541477799996-------------18955707897699999977817
Q gi|254780263|r 299 EYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEVELIYPI 365 (392)
Q Consensus 299 ~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l~l~~pi 365 (392)
.+++|+|++.||+. +.++..||++.+|+|+.++.|++.. +++|++++.|+.|.|+|++++|+
T Consensus 2 vs~~F~A~i~v~~~-----~~pi~~G~~~~~h~~t~~~~~~i~~l~~~id~~tg~~~k~~P~~l~~~~~a~v~i~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNV-----DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred CCCEEEEEEEEECC-----CCCCCCCCCEEEEECCCEEEEEEEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEECCCCE
T ss_conf 36789999999979-----9765899886999668779199988854404789978678984668899999998849988
Q ss_pred EECCC------CEEEEEECCEEEEEEEEEEE
Q ss_conf 75469------84999989969998999553
Q gi|254780263|r 366 AMEPN------QTFSMREGGKTVGAGLILEI 390 (392)
Q Consensus 366 ~~e~~------~rfilRd~~~tig~G~I~~v 390 (392)
|+|+| +||+|||+|+|||+|+|++|
T Consensus 77 ~vE~f~~~~~LGRf~LR~~g~Tva~G~I~~v 107 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEEECCCCCCCCEEEEEECCCEEEEEEEEEC
T ss_conf 9968333988534999989988999999989
No 107
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.72 E-value=4.6e-17 Score=124.84 Aligned_cols=145 Identities=23% Similarity=0.280 Sum_probs=99.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH--------
Q ss_conf 799999046898878999999876444200131268686986292063789998219908999847873024--------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY-------- 84 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f-------- 84 (392)
++|+++|..++|||||+.+|++... +.... .-|.|.+.-...+.++++.+.|+||||-.+.
T Consensus 2 ~~ValvG~pN~GKStL~N~l~g~~~------~ivs~-----~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~ 70 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR------AIVSD-----IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIG 70 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC------EEECC-----CCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHHHHH
T ss_conf 7999988999989999999968973------34328-----898478632678953998899972677544457899999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 67798774002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
++.....+..+|.+++|+|++.+...+-.+ .+.+..+.| +++++||+|+++.++.++.. ...+
T Consensus 71 ~~~~~~~i~~aDlil~vvD~~~~~~~~~~~--~~~~~~~~p-~i~v~NKiDl~~~~~~~~~~--------------~~~~ 133 (157)
T cd04164 71 IERAREAIEEADLVLFVIDASRGLDEEDLE--ILELPADKP-IIVVLNKSDLLPDSELLSLL--------------AGKP 133 (157)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCHHHHH--HHHHHCCCC-EEEEEECCCCCCCHHHHHHC--------------CCCC
T ss_conf 999986301576799998898778888999--998514799-89999676014866679852--------------8997
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 2331146764114445652123320344310
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
++|+||.+|. +++.|++.|.+
T Consensus 134 vi~ISA~~g~----------Gi~~L~~~I~e 154 (157)
T cd04164 134 IIAISAKTGE----------GLDELKEALLE 154 (157)
T ss_pred EEEEECCCCC----------CHHHHHHHHHH
T ss_conf 7999852795----------99999999999
No 108
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.72 E-value=3.3e-17 Score=125.74 Aligned_cols=90 Identities=56% Similarity=0.983 Sum_probs=86.4
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEEEE
Q ss_conf 63000168999710567875555115978999954147779999618955707897699999977817754698499998
Q gi|254780263|r 298 QEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSMRE 377 (392)
Q Consensus 298 ~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfilRd 377 (392)
++.++|+|++++|+.+++++.+++..+|+|++++.+++++|++.+.++.+.+.|||.+.+.++|.+|+++++++||.||+
T Consensus 1 k~h~kf~A~vYvLtkeEGGR~~pf~~~YrpQ~f~rT~Dvtg~i~~~~~~~mvmPGd~~~~~v~L~~p~~le~g~rFtiRE 80 (90)
T cd03707 1 KPHTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAIRE 80 (90)
T ss_pred CCCCEEEEEEEEECHHHCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCEEECCCCEEEEEEEECCCCCCCCCCEEEEEE
T ss_conf 99778999999974778888788867771169998358577999018855973577289999987873147899699978
Q ss_pred CCEEEEEEEE
Q ss_conf 9969998999
Q gi|254780263|r 378 GGKTVGAGLI 387 (392)
Q Consensus 378 ~~~tig~G~I 387 (392)
+|+|||.|+|
T Consensus 81 Gg~TVg~GiI 90 (90)
T cd03707 81 GGRTVGAGVI 90 (90)
T ss_pred CCEEEEEEEC
T ss_conf 9998987789
No 109
>COG1159 Era GTPase [General function prediction only]
Probab=99.70 E-value=5.8e-17 Score=124.26 Aligned_cols=174 Identities=20% Similarity=0.234 Sum_probs=106.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC-CH---HHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787-30---246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG-HA---DYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG-H~---~f~~~m 88 (392)
--++++|-..+|||||+.+|.+.--.-.....++-+ -+-+|| +..+++.|.|+|||| |+ .+-+-|
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR---~~I~GI--------~t~~~~QiIfvDTPGih~pk~~l~~~m 75 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR---NRIRGI--------VTTDNAQIIFVDTPGIHKPKHALGELM 75 (298)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHH---HHEEEE--------EECCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 999998699876899998985682575159853114---421479--------986984499984898887651788999
Q ss_pred HH----HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 87----74002331452012344332106778888631876023310023335612221101232100111014532210
Q gi|254780263|r 89 IT----GATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~----g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.+ ++..+|..++||||.+++.+-.+..+..++....| .|+++||+|.+.++.......+.... ...|. .
T Consensus 76 ~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~~~~~~---~~~f~---~ 148 (298)
T COG1159 76 NKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLIAFLKK---LLPFK---E 148 (298)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHHHHHHHHHH---HCCCC---E
T ss_conf 99999872457599999866656891079999977643898-69999840257847789999999985---08830---1
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCC------CCCCCCCCCEECCC
Q ss_conf 233114676411444565212332034431025222------21000011000000
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTP------QRSLDAPFLMHIEG 214 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p------~~~~~~p~r~~I~~ 214 (392)
++|+||+.|. +...|++.+..++|.- ..-.|.|-||.+.+
T Consensus 149 ivpiSA~~g~----------n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aE 194 (298)
T COG1159 149 IVPISALKGD----------NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAE 194 (298)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 7995101567----------889999999985888888488565158708889999
No 110
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.69 E-value=1.5e-16 Score=121.59 Aligned_cols=153 Identities=21% Similarity=0.265 Sum_probs=97.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH---H-HHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024---6-7798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY---V-KNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f---~-~~mi 89 (392)
.|+++|..++|||||+.+|++... .... .-|.|.+.....+.++++.+.|+||||..++ . .+++
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~~~-------~Vs~-----~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v 68 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGARQ-------HVGN-----WPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKV 68 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC-------EEEC-----CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHH
T ss_conf 989988999899999999959996-------5638-----9997233357687525167999968885014653278999
Q ss_pred H-H---HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 7-7---40023314520123443321067788886318760233100233356122211012321001110145322102
Q gi|254780263|r 90 T-G---ATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 90 ~-g---~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
. . ...+|.+++|+||+.- . ++..-+..+..++.| +|+++||+|+++.++..... .++.+.+ +.|+
T Consensus 69 ~~~~~~~~~aDlvl~vvDa~~~-e-r~l~l~~~l~~~~~p-~IvVlNK~Dl~~~~~~~~~~-~~l~~~l-------g~~v 137 (188)
T pfam02421 69 ARDYLLEEKPDVIINVVDATNL-E-RNLYLTLQLLELGIP-VVVALNMMDEAEKKGIKIDI-KKLSELL-------GVPV 137 (188)
T ss_pred HHHHHHHCCCCCEEEEEECCCH-H-HHHHHHHHHHHCCCC-EEEEECCCHHCCCCCCHHHH-HHHHHHC-------CCCE
T ss_conf 9999862368736999767624-5-448999999976998-89996170201003652039-9999873-------9968
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 3311467641144456521233203443102522
Q gi|254780263|r 166 IRGSALCALQGTNKELGEDSIHALMKAVDTHIPT 199 (392)
Q Consensus 166 i~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~ 199 (392)
+++||.+|. +++.|++.|.+..+.
T Consensus 138 i~ISA~~g~----------Gi~eL~~~I~~~~~~ 161 (188)
T pfam02421 138 VPTSARKGE----------GIDELKDAIIEVAEG 161 (188)
T ss_pred EEEEEECCC----------CHHHHHHHHHHHHHC
T ss_conf 999931699----------999999999999726
No 111
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.68 E-value=2e-16 Score=120.87 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=113.9
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC----------
Q ss_conf 2799999046898878999999876444200131268686986292063789998219908999847873----------
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------- 81 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------- 81 (392)
.++||++|-.+.|||||+.+|++.-.- ..+. .-|-|.|+-...|+++++.|.||||+|-
T Consensus 452 ~~rIAIIGRPNVGKSTLiN~LlgeeR~------IVs~-----iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~i 520 (714)
T PRK09518 452 LRRVALVGRPNVGKSSLLNQLTREERA------VVND-----LAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGA 520 (714)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEE------EECC-----CCCCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCC
T ss_conf 735888669988789999999689758------8568-----89850230556799999789999860015244325432
Q ss_pred HHHH-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 0246-779877400233145201234433210677888863187602331002333561222110123210011101453
Q gi|254780263|r 82 ADYV-KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 82 ~~f~-~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
+.|. ...++++..+|+|+||+||.+|+..|-..-+.++...|-+ +|+++||+|+++.++. +..+.+++..|...
T Consensus 521 E~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~-~IivvNKWDLv~~~~~-~~~~~~i~~~l~~~--- 595 (714)
T PRK09518 521 EYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAGRA-LVLAFNKWDLMDEFRR-QRLEREIDTEFDRV--- 595 (714)
T ss_pred CHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC-EEEEEECHHCCCHHHH-HHHHHHHHHHCCCC---
T ss_conf 279999999988658899999867767528999999999985993-7999961430686689-99999999756368---
Q ss_pred EEEECCCCEEEEEEECC
Q ss_conf 22102331146764114
Q gi|254780263|r 161 DDTPIIRGSALCALQGT 177 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~~ 177 (392)
..+|++++||.+|+...
T Consensus 596 ~~apiv~iSA~~g~~v~ 612 (714)
T PRK09518 596 MWAERVNISAKTGRHTN 612 (714)
T ss_pred CCCCEEEEECCCCCCHH
T ss_conf 99988999667897889
No 112
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.68 E-value=4.2e-16 Score=118.88 Aligned_cols=87 Identities=25% Similarity=0.354 Sum_probs=77.0
Q ss_pred CCEEEEEEEEEEECCCCCCCCCC-CCCCEEEEEECCEEEEEEEE-------------ECCCHHHHCCCCEEEEEEEECCC
Q ss_conf 30001689997105678755551-15978999954147779999-------------61895570789769999997781
Q gi|254780263|r 299 EYSRFRASVYILTASEGGRTTGF-MDNYRPQFFMDTADVTGRII-------------LSPGSQAVMPGDRVDLEVELIYP 364 (392)
Q Consensus 299 ~~~~f~A~i~il~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~i~-------------~~~~~~~i~~g~~~~v~l~l~~p 364 (392)
.+.+|+|+|.+|+. +.++ ..||++.+|+++++..|++. ..++|+++++|+.|.|+|++.+|
T Consensus 2 v~~~F~AqI~v~~~-----~~~Ii~~Gy~~v~h~ht~~~~~~i~~l~~~~d~~tg~~~k~~P~~l~~g~~a~v~i~~~~p 76 (108)
T cd03704 2 VVTEFEAQIAILEL-----KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGP 76 (108)
T ss_pred CCCEEEEEEEEECC-----CCCCCCCCCCEEEEECCCCCCEEHHHHHHHHCCCCCCEECCCCCCCCCCCEEEEEEEECCC
T ss_conf 53289999999919-----9851459976599955771068987868877467897765597335899989999996993
Q ss_pred EEECCC------CEEEEEECCEEEEEEEEEEE
Q ss_conf 775469------84999989969998999553
Q gi|254780263|r 365 IAMEPN------QTFSMREGGKTVGAGLILEI 390 (392)
Q Consensus 365 i~~e~~------~rfilRd~~~tig~G~I~~v 390 (392)
+|+|+| +||+|||+|+|||+|+|++|
T Consensus 77 i~iE~f~~~~~LGRf~lRd~g~TIa~G~V~~v 108 (108)
T cd03704 77 ICLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EEEEEHHHCCCCCCEEEEECCCEEEEEEEEEC
T ss_conf 48988301988477899829978999999989
No 113
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.67 E-value=7.8e-16 Score=117.22 Aligned_cols=84 Identities=24% Similarity=0.363 Sum_probs=75.6
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-------------CCCHHHHCCCCEEEEEEEECCCE
Q ss_conf 30001689997105678755551159789999541477799996-------------18955707897699999977817
Q gi|254780263|r 299 EYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-------------SPGSQAVMPGDRVDLEVELIYPI 365 (392)
Q Consensus 299 ~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-------------~~~~~~i~~g~~~~v~l~l~~pi 365 (392)
.+.+|+|+|.+|+ |+.++..||++.+|++++++.|++.. +++|+++++|+.|.|+|++++|+
T Consensus 2 ~~~~F~AqI~vl~-----~p~~I~~Gy~~v~h~ht~~~~~~i~~l~~~~d~~tg~~~~~~P~~l~~g~~a~v~i~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLN-----HPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred CCCEEEEEEEEEC-----CCCCCCCCCEEEEEEEECEEEEEEEEEEEEECCCCCCEECCCCCCCCCCCEEEEEEEECCCE
T ss_conf 4437999999997-----99850299546899740512279446776405788879654983027765799999979946
Q ss_pred EECCC------CEEEEEECCEEEEEEEE
Q ss_conf 75469------84999989969998999
Q gi|254780263|r 366 AMEPN------QTFSMREGGKTVGAGLI 387 (392)
Q Consensus 366 ~~e~~------~rfilRd~~~tig~G~I 387 (392)
|+|+| +||+|||+|+|||+|+|
T Consensus 77 ~vE~f~~~~~LGRf~lRd~g~Tia~G~V 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEECCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 8850003986555999989958998969
No 114
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.67 E-value=6.3e-16 Score=117.80 Aligned_cols=85 Identities=39% Similarity=0.633 Sum_probs=75.5
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEEC-----------CCHHHHCCCCEEEEEEEECCCEE
Q ss_conf 6300016899971056787555511597899995414777999961-----------89557078976999999778177
Q gi|254780263|r 298 QEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILS-----------PGSQAVMPGDRVDLEVELIYPIA 366 (392)
Q Consensus 298 ~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~-----------~~~~~i~~g~~~~v~l~l~~pi~ 366 (392)
+.+++|+|+|.||+. +.++..||++++|+++++++|++... .+++++++||.+.|++++.+|+|
T Consensus 1 k~~~~F~A~i~i~~~-----~~~i~~G~~~~l~~~t~~v~~~i~~l~~~id~~t~~~~~p~~l~~g~~a~v~i~~~~pi~ 75 (102)
T cd01513 1 QAVDKFVAEIYVLDH-----PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVA 75 (102)
T ss_pred CCCCEEEEEEEEECC-----CCCCCCCCCEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCE
T ss_conf 965689999999989-----877689982599973561877986645422556444669748248983889999798636
Q ss_pred ECCC------CEEEEEECCEEEEEEEE
Q ss_conf 5469------84999989969998999
Q gi|254780263|r 367 MEPN------QTFSMREGGKTVGAGLI 387 (392)
Q Consensus 367 ~e~~------~rfilRd~~~tig~G~I 387 (392)
+|+| +||+|||+|+|||+|+|
T Consensus 76 ve~~~~~~~lGRFilrd~g~TVa~G~V 102 (102)
T cd01513 76 LETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred ECHHCCCCCCCCEEEEECCCEEEEEEC
T ss_conf 510101888760999989988998879
No 115
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=8e-16 Score=117.17 Aligned_cols=159 Identities=25% Similarity=0.342 Sum_probs=100.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC-------HH---
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873-------02---
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH-------AD--- 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH-------~~--- 83 (392)
-||++|....|||||+.+|++.... +. ..-|.|.+..+ +.++ .+.|+||||. ..
T Consensus 3 ~VaivGRpNVGKSTL~N~L~g~k~~-------vs-----~~pg~Tr~~~~--~~~~--~~~~vDtPG~g~~~~~~~~~~~ 66 (195)
T PRK04213 3 EIIFVGRSNVGKSTLIRALTGKKVR-------VG-----KRPGVTLKPNE--YDWG--DFILVDLPGFGFMSGVPKKVQE 66 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-------CC-----CCCCEEEEEEE--EECC--CEEEEECCCCCCCCCCCHHHHH
T ss_conf 7999769998899999999689851-------34-----89964873458--8508--8999999996222458888999
Q ss_pred HHH-HHH----HHHHCCCCEEEEECCCCCC-----------CCCHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHHHHHC
Q ss_conf 467-798----7740023314520123443-----------3210677888863187602331002333561-2221101
Q gi|254780263|r 84 YVK-NMI----TGATQADGAILVCAAEDGP-----------KPQTREHILLARQIGISSIVVYMNKVDAVDD-DELLDIS 146 (392)
Q Consensus 84 f~~-~mi----~g~~~~D~ailvVda~~G~-----------~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~-~~~~~~i 146 (392)
-+. .|. ..+..+|.+++||||..++ .++..+-+..++.+++| +|+++||+|++.. ++..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p-~ilv~NKiD~i~~~~~~l~~i 145 (195)
T PRK04213 67 RIKDEIVHYIEDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGIN-PIVAVNKMDKIKNSEEVLDEI 145 (195)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-EEEEEECHHHCCCHHHHHHHH
T ss_conf 9999999999998851789999995786544211234456777789999999874998-799998733058778889999
Q ss_pred CCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 23210011101453221023311467641144456521233203443102522221
Q gi|254780263|r 147 EYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 147 ~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
.+.+........+. ..++++||..+ +++.|++.|..++|.-.+
T Consensus 146 ~e~~~~~~~~~~~~--~~iv~iSakk~-----------Gid~L~~~I~~~L~E~~~ 188 (195)
T PRK04213 146 AERLGLYPPWRQWL--DIIAPISAKKG-----------GIEALKGLINKRLREFKR 188 (195)
T ss_pred HHHHHCCCCHHHCC--CEEEEEECCCC-----------CHHHHHHHHHHHCHHHCC
T ss_conf 99982576156569--87999845779-----------999999999996755374
No 116
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.64 E-value=1e-16 Score=122.77 Aligned_cols=81 Identities=31% Similarity=0.459 Sum_probs=74.8
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
Q ss_conf 10000000135544543014874245348967999506874321254121001211443210013666411245432202
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPR 287 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~r 287 (392)
||||||++++..+.++.++|+|++|++++||++.++|++ ..++|++|+.+++++++|.+||+|+++|+ +..|++|
T Consensus 1 fr~PVQ~V~r~~~~~R~~~G~v~sG~v~~GD~v~i~Psg---~~a~Vk~I~~~~~~~~~A~aG~~v~l~L~--~eidisR 75 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG---KTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSR 75 (81)
T ss_pred CCCCEEEEEECCCCCCEEEEEEEECCEECCCEEEECCCC---CCEEEEEEEECCCCCCEECCCCEEEEEEC--CCCCCCC
T ss_conf 932518998269984689999933558389999968999---81899899958998248879982899978--7311579
Q ss_pred HHEEEC
Q ss_conf 117732
Q gi|254780263|r 288 GRVVCA 293 (392)
Q Consensus 288 Gdvl~~ 293 (392)
||+|++
T Consensus 76 Gdvi~s 81 (81)
T cd03695 76 GDVIVA 81 (81)
T ss_pred CCEEEC
T ss_conf 879859
No 117
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.63 E-value=1.6e-15 Score=115.25 Aligned_cols=154 Identities=21% Similarity=0.255 Sum_probs=93.5
Q ss_pred CCCCEE-EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC-CHHH
Q ss_conf 038827-9999904689887899999987644420013126868698629206378999821-990899984787-3024
Q gi|254780263|r 8 RNKESL-GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG-HADY 84 (392)
Q Consensus 8 ~~k~~~-ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG-H~~f 84 (392)
+.|..+ .|+++|..++|||||+.+|++.-... -| .-|-|.+.......+ +++.+.|+|||| ..+.
T Consensus 36 r~~~g~p~VaivG~PNvGKSTLlN~L~g~~~~v------~~------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~ 103 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTGADVYA------ED------QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL 103 (204)
T ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE------EC------CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 774599879998899998999999994899634------15------677645763668995699779998368644678
Q ss_pred H-------HHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEE
Q ss_conf 6-------77987740023314520123443-3210677888863187--602331002333561222110123210011
Q gi|254780263|r 85 V-------KNMITGATQADGAILVCAAEDGP-KPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLL 154 (392)
Q Consensus 85 ~-------~~mi~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l 154 (392)
- +.++..+..||..++||||+... ..|......+++.++. +++|+++||+|+++.++..+..
T Consensus 104 p~~lie~~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~~~~~~~~~-------- 175 (204)
T cd01878 104 PHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERL-------- 175 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHH--------
T ss_conf 378999999999999739899999979985366779999999998065557607888670479957589999--------
Q ss_pred EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 10145322102331146764114445652123320344310
Q gi|254780263|r 155 KEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 155 ~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
.. ...+++++||.+|. +++.|.+.|.+
T Consensus 176 ~~----~~~~~i~ISA~~g~----------Gid~L~~~I~e 202 (204)
T cd01878 176 EA----GRPDAVFISAKTGE----------GLDELLEAIEE 202 (204)
T ss_pred HH----CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf 70----89987999886894----------99999999995
No 118
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.63 E-value=6.1e-16 Score=117.90 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=92.8
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH---------HHH
Q ss_conf 99046898878999999876444200131268686986292063789998219908999847873024---------677
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY---------VKN 87 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f---------~~~ 87 (392)
++|...+|||||+.+|++.... ... .-|.|.+.....+.+++..+.|+||||..++ .++
T Consensus 1 ivG~pNvGKSTL~N~L~g~~~~-------vs~-----~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~ 68 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------VGN-----WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARD 68 (158)
T ss_pred CCCCCCCCHHHHHHHHHCCCCE-------ECC-----CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 9798988899999999599864-------617-----8982763478899629937999979874125641356789999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 98774002331452012344332106778888631876023310023335612221101232100111014532210233
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
.+.. ..+|.+++|+||+. +. +..+.+.....++.| +|+++||+|+++.++..... +++.+.+ +.|+++
T Consensus 69 ~~~~-~~~d~vl~vvD~~~-~~-~~l~~~~~l~~~~~p-~ivV~NK~D~~~~~~~~~~~-~~l~~~~-------~~~ii~ 136 (158)
T cd01879 69 FLLG-EKPDLIVNVVDATN-LE-RNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKIDL-DKLSELL-------GVPVVP 136 (158)
T ss_pred HHHH-CCCCCEEEEEECCH-HH-HHHHHHHHHHHCCCC-EEEEEEHHHHHHHCCCHHHH-HHHHHHC-------CCCEEE
T ss_conf 9985-17871799977740-67-768999999865998-89994027765522546679-9999871-------994899
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 11467641144456521233203443102
Q gi|254780263|r 168 GSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 168 ~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
+||.+|. ++..|++.+.+.
T Consensus 137 iSA~~g~----------Gi~~L~~~i~el 155 (158)
T cd01879 137 TSARKGE----------GIDELKDAIAEL 155 (158)
T ss_pred EECCCCC----------CHHHHHHHHHHH
T ss_conf 9877897----------999999999998
No 119
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=1e-15 Score=116.50 Aligned_cols=150 Identities=26% Similarity=0.332 Sum_probs=119.2
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---------
Q ss_conf 82799999046898878999999876444200131268686986292063789998219908999847873---------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH--------- 81 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH--------- 81 (392)
+.+.||++|....|||||+.+|++... .-.+- .-|.|+|+-...|++++++|.||||.|-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR------~Iv~~-----~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~ 245 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER------VIVSD-----IAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES 245 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCE------EEECC-----CCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCC
T ss_conf 750899992787870588877506825------98459-----9986220331258998818999987787746641242
Q ss_pred -HHHH-HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC-HHHHHHCCCCCCEEEEEEE
Q ss_conf -0246-779877400233145201234433210677888863187602331002333561-2221101232100111014
Q gi|254780263|r 82 -ADYV-KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD-DELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 82 -~~f~-~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~-~~~~~~i~~~i~~~l~~~~ 158 (392)
+.|. --++.+...+|.++||+||.+|+..|-.+-+.++...|-. +|+++||+|+++. +...+..+.++...|...+
T Consensus 246 ~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 246 VEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLD 324 (444)
T ss_pred EEEEEEHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 6887505467678656889999988878368899999999975897-499997532578516679999999998722136
Q ss_pred EEEEEECCCCEEEEEEE
Q ss_conf 53221023311467641
Q gi|254780263|r 159 YSDDTPIIRGSALCALQ 175 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~ 175 (392)
-+|++++||.++..
T Consensus 325 ---~a~i~~iSA~~~~~ 338 (444)
T COG1160 325 ---FAPIVFISALTGQG 338 (444)
T ss_pred ---CCEEEEEEECCCCC
T ss_conf ---77279997047877
No 120
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.60 E-value=2.7e-15 Score=113.89 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=91.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC-----CHHH--H
Q ss_conf 9999904689887899999987644420013126868698629206378999821-990899984787-----3024--6
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG-----HADY--V 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG-----H~~f--~ 85 (392)
+||++|-..+|||||+.+|++...... | .-|-|.+.....+.+ +++.+.|+|||| |++. .
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~V~------~------~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~~~l~ 69 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA------D------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG 69 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEE------C------CCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 589989999989999999967876032------5------6665237447799936985699964886444554662248
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCC--CHHHHHHHHHH-----CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 7798774002331452012344332--10677888863-----1876023310023335612221101232100111014
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKP--QTREHILLARQ-----IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~-----lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
...++-+..+|..++|||++....+ |.+.-...+.. .+ +++|+++||+|+++.++..+..+ +++...
T Consensus 70 ~~~l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~-kp~ilv~NK~Dl~~~~~~~~~~~----~~~~~~- 143 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLE-KPRIVVLNKIDLLDEEELFELLK----ELLKEL- 143 (170)
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHC-CCCEEEEEHHHCCCHHHHHHHHH----HHHHHC-
T ss_conf 999861334561799998998789899999999999982744403-86506776202428356389999----999856-
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 5322102331146764114445652123320344310
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
...|++++||.+|. +++.|++.|.+
T Consensus 144 --~~~~vi~iSA~~g~----------gi~~L~~~I~~ 168 (170)
T cd01898 144 --WGKPVFPISALTGE----------GLDELLRKLAE 168 (170)
T ss_pred --CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf --99958999754797----------99999999996
No 121
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.58 E-value=3.4e-14 Score=107.08 Aligned_cols=86 Identities=22% Similarity=0.409 Sum_probs=78.7
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEEC-CCEEECCCCEEEEE
Q ss_conf 63000168999710567875555115978999954147779999618955707897699999977-81775469849999
Q gi|254780263|r 298 QEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELI-YPIAMEPNQTFSMR 376 (392)
Q Consensus 298 ~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~-~pi~~e~~~rfilR 376 (392)
.+++.|+|+|.+|. |++.++.||+|.+|+++.++++++... ..+.+++||.+.|+|++. +|.++++++||++|
T Consensus 1 ~a~~eF~A~I~vL~-----HpTtI~~gyq~viH~g~irQta~I~~i-~~~~lrtgd~a~V~frF~~~PEyi~~G~~~ifR 74 (87)
T cd03708 1 KACWEFEAEILVLH-----HPTTISPGYQATVHIGSIRQTARIVSI-DKDVLRTGDRALVRFRFLYHPEYLREGQRLIFR 74 (87)
T ss_pred CCEEEEEEEEEEEE-----CCCEEECCCEEEEEEEEEEEEEEEEEC-CCCCCCCCCEEEEEEEEECCCEEECCCCEEEEE
T ss_conf 92799999999995-----788960796999999547899999984-702010698289999996474697589999997
Q ss_pred ECCEEEEEEEEEEE
Q ss_conf 89969998999553
Q gi|254780263|r 377 EGGKTVGAGLILEI 390 (392)
Q Consensus 377 d~~~tig~G~I~~v 390 (392)
+ |+|.|+|.|++|
T Consensus 75 e-G~tkgiG~V~~v 87 (87)
T cd03708 75 E-GRTKGVGEVTKV 87 (87)
T ss_pred C-CCCEEEEEEEEC
T ss_conf 3-873198999969
No 122
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.58 E-value=1.4e-14 Score=109.40 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=93.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH----HH----
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787302----46----
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD----YV---- 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~----f~---- 85 (392)
.|+++|-..+|||||+.+|++..... .+ .-|-|.+.-...+++++..+.|+||||--+ ..
T Consensus 2 ~VaivG~pNvGKStL~N~L~g~~~~v------~~------~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie 69 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV------AP------YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIE 69 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEE------CC------CCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 79998899988999999995898602------37------5872357436899983727687248865567478888999
Q ss_pred HHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHHHHH---H--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 77987740-023314520123443321067788886---3--18760233100233356122211012321001110145
Q gi|254780263|r 86 KNMITGAT-QADGAILVCAAEDGPKPQTREHILLAR---Q--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 86 ~~mi~g~~-~~D~ailvVda~~G~~~QT~eh~~l~~---~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
+..+.++. .+|..++|+|+++.....-.+...+.+ . .+. ++|+++||+|+++.++..+. .++.+.
T Consensus 70 ~~~~~~l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~-p~i~v~NK~Dl~~~~~~~~~-----~~~~~~--- 140 (168)
T cd01897 70 MQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNK-PVIVVLNKIDLLTFEDLSEI-----EEEEEL--- 140 (168)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEEEECCCCCCCCCHHHH-----HHHHHC---
T ss_conf 999999983577689999688767848999999999877652588-87999947534581007999-----999970---
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 322102331146764114445652123320344310
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
...+++++||..|. ++..|++.+.+
T Consensus 141 -~~~~vi~ISA~~g~----------Gi~~L~~~i~e 165 (168)
T cd01897 141 -EGEEVLKISTLTEE----------GVDEVKNKACE 165 (168)
T ss_pred -CCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf -89988999815896----------99999999999
No 123
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.56 E-value=9.6e-14 Score=104.28 Aligned_cols=95 Identities=22% Similarity=0.415 Sum_probs=87.0
Q ss_pred HHEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 11773267776300016899971056787555511597899995414777999961895570789769999997781775
Q gi|254780263|r 288 GRVVCAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAM 367 (392)
Q Consensus 288 Gdvl~~~~~~~~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~ 367 (392)
|++|+.++...++..++|++.++... +.+++++.++++|+|++++++|+.+.+.. .+.+|+.+++++.|++|+++
T Consensus 1 G~~L~~~~~~~~t~~~d~~l~~l~~~----~~~lk~~~~v~lh~Gt~~v~~ri~ll~~~-~l~pG~~~~~ql~l~~pv~~ 75 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLDRD-ELAPGEEALAQLRLEEPLVA 75 (97)
T ss_pred CCEEECCCCCCCEEEEEEEEEEECCC----CCCCCCCCEEEEEECCCCEEEEEEECCCC-CCCCCCEEEEEEEECCCEEC
T ss_conf 99996799637474999999996899----94554896299997527256999967886-21899849999998986831
Q ss_pred CCCCEEEEEECC--EEEEEEEE
Q ss_conf 469849999899--69998999
Q gi|254780263|r 368 EPNQTFSMREGG--KTVGAGLI 387 (392)
Q Consensus 368 e~~~rfilRd~~--~tig~G~I 387 (392)
..+|||+|||.+ +|+|+|.|
T Consensus 76 ~~gDrfIlR~~s~~~TigGG~V 97 (97)
T cd04094 76 LRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred CCCCEEEEECCCCCEEEEEEEC
T ss_conf 6898699941998977711899
No 124
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.51 E-value=3.8e-14 Score=106.75 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=94.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH-----
Q ss_conf 279999904689887899999987644420013126868698629206378999821990899984787302467-----
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK----- 86 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~----- 86 (392)
.++||.+|+.+.|||||-.+||+...+.+ +++ |.|++.+...+.++++.+.++|.||--+...
T Consensus 3 ~i~IALvGNPN~GKSTLFN~LTG~~q~Vg-------NwP-----GvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~ 70 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG-------NWA-----GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT 70 (772)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEE-------CCC-----CCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCC
T ss_conf 35699888998789999999868998357-------899-----764742389999689469999799778699999777
Q ss_pred ---HHHHH---H-HCCCCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf ---79877---4-002331452012344332106778888---6318760233100233356122211012321001110
Q gi|254780263|r 87 ---NMITG---A-TQADGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 87 ---~mi~g---~-~~~D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
+.++- + ..+|..+.||||+ +-++++.+. ..+|+| +|+++|+||.+...- ++-+++.+=+.
T Consensus 71 s~dE~Var~~ll~~~pDvvvnVvDAt-----nLeRnLyLt~QllElg~P-vVvaLNM~D~A~~~G----i~ID~~~Ls~~ 140 (772)
T PRK09554 71 SLDEQIACHYILSGDADLLINVVDAS-----NLERNLYLTLQLLELGIP-CIVALNMLDIAEKQN----IRIDIDALSAR 140 (772)
T ss_pred CCHHHHHHHHHHCCCCCEEEEEEECC-----CHHHHHHHHHHHHHCCCC-EEEEEECHHHHHHCC----CEECHHHHHHH
T ss_conf 73089999986139998999980168-----754428999999974999-899987799898877----93289999998
Q ss_pred EEEEEEEECCCCEEEEE
Q ss_conf 14532210233114676
Q gi|254780263|r 157 HKYSDDTPIIRGSALCA 173 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g 173 (392)
..+|++|+||.++
T Consensus 141 ----LGvPVV~~~A~~g 153 (772)
T PRK09554 141 ----LGCPVIPLVSTRG 153 (772)
T ss_pred ----HCCCEEEEEECCC
T ss_conf ----5899899982788
No 125
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.51 E-value=1.1e-13 Score=103.81 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=90.3
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 38827999990468988789999998764442001312686869862920637899982199089998478730246779
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
.+..+++.++|..++|||||+.++... ..+.. --|+......++.++..+.+.|||||+.|-.-.
T Consensus 11 ~~k~~Ki~llG~~~vGKTsll~~~~~~---------~~~~~------~pTig~~~~~v~~~~~~~~iwDt~Gqe~~~~~~ 75 (174)
T pfam00025 11 LNKEMRILILGLDNAGKTTILYKLKLG---------EIVTT------IPTIGFNVETVTYKNVKFTVWDVGGQESLRPLW 75 (174)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCC---------CCCCC------CCCCCCEEEEEEECCEEEEEEECCCCCCCCHHH
T ss_conf 896669999999999889999999549---------98874------474682389999899999998279870232679
Q ss_pred HHHHHCCCCEEEEECCCCC-CCCCHHHHHHH-HH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEE
Q ss_conf 8774002331452012344-33210677888-86---318760233100233356122211012321001110145-322
Q gi|254780263|r 89 ITGATQADGAILVCAAEDG-PKPQTREHILL-AR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDD 162 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G-~~~QT~eh~~l-~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~ 162 (392)
-.-...+|++++|+|+++- -+.+.++.+.- .+ ..++| ++++.||+|+.+.... + ++.+.+..... ...
T Consensus 76 ~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~p-iliv~NK~DL~~~~~~-~----ei~~~~~~~~~~~~~ 149 (174)
T pfam00025 76 RNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAP-LLILANKQDLPGAMSE-A----EIRELLGLHELKSRP 149 (174)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCCCH-H----HHHHHHHHHHCCCCC
T ss_conf 988417826899986786787999999999987542358970-8998725667678999-9----999999786441799
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780263|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
++++++||.+|.
T Consensus 150 ~~~~~~SAktG~ 161 (174)
T pfam00025 150 WEIQGCSAVTGE 161 (174)
T ss_pred CEEEEEECCCCC
T ss_conf 689999886795
No 126
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.49 E-value=1.1e-13 Score=104.01 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=89.6
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCC-----CHH--HHHHH
Q ss_conf 99046898878999999876444200131268686986292063789998219-90899984787-----302--46779
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPG-----HAD--YVKNM 88 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PG-----H~~--f~~~m 88 (392)
++|-..+|||||+.+|++..... .. .-|-|.+.-...+.++ +..+.|+|||| |++ .+...
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~~~v-------~~-----~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~~~~~ 68 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKV-------AN-----YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQF 68 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEE-------EC-----CCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 96999888999999996899603-------07-----8996761246799947996699995787545733787899999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHH----------HHH-------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCC
Q ss_conf 877400233145201234433210677----------888-------863187602331002333561222110123210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREH----------ILL-------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIR 151 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh----------~~l-------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~ 151 (392)
++.+..+|..++|+|+.+....+.+.- +.. ....+.| +++++||+|+++.++..+....
T Consensus 69 l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp-~i~v~NK~Dl~~~~~~~~~~~~--- 144 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEELVR--- 144 (176)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCC-EEEEEECEECCCHHHHHHHHHH---
T ss_conf 987410889999998987655454458999999999999711566555432697-1999968603470031599999---
Q ss_pred EEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 01110145322102331146764114445652123320344310
Q gi|254780263|r 152 DLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 152 ~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
.+.. ....|++++||..+. ++..|++.+.+
T Consensus 145 -~~~~---~~~~~ii~iSA~~~~----------gi~~L~~~i~~ 174 (176)
T cd01881 145 -ELAL---EEGAEVVPISAKTEE----------GLDELIRAIYE 174 (176)
T ss_pred -HHHH---CCCCCEEEEECCCCC----------CHHHHHHHHHH
T ss_conf -9974---689958999777887----------99999999996
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.45 E-value=3.1e-13 Score=101.14 Aligned_cols=143 Identities=19% Similarity=0.154 Sum_probs=90.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
+.-..|+++|.-++|||||+.+|.... .. .-.-|+......+..++..+++-|+|||+.|-.-.-
T Consensus 12 ~~~~Ki~ilG~~~sGKTsll~~l~~~~---------~~------~~~pT~g~~~~~v~~~~~~~~lwD~~G~~~~~~~~~ 76 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED---------IS------HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWR 76 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC---------CC------CCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 877589999799998899999985699---------86------606811323799998999999985587510126899
Q ss_pred HHHHCCCCEEEEECCCCCC-CCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEE
Q ss_conf 7740023314520123443-3210677888----86318760233100233356122211012321001110145-3221
Q gi|254780263|r 90 TGATQADGAILVCAAEDGP-KPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDT 163 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~-~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~ 163 (392)
.-...+|++|+|||+++-- ..++++.+.- ....++| ++++.||+|+.+... .+ ++.+.|....+ ...+
T Consensus 77 ~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~P-iLiv~NK~Dl~~a~~-~~----eI~~~l~l~~~~~~~~ 150 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAP-AE----EIAEALNLHDLRDRTW 150 (173)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCC-HH----HHHHHHCHHHCCCCCC
T ss_conf 76555637999996675688999999999997413006983-899997666777899-99----9999858764348875
Q ss_pred ECCCCEEEEE
Q ss_conf 0233114676
Q gi|254780263|r 164 PIIRGSALCA 173 (392)
Q Consensus 164 pii~~sa~~g 173 (392)
.++++||.+|
T Consensus 151 ~i~~~SA~tG 160 (173)
T cd04155 151 HIQACSAKTG 160 (173)
T ss_pred EEEEEECCCC
T ss_conf 8999578579
No 128
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=8.2e-13 Score=98.51 Aligned_cols=150 Identities=25% Similarity=0.185 Sum_probs=92.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC-EEEEEEECCCCHHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199-089998478730246779877
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK-RFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-~~i~iiD~PGH~~f~~~mi~g 91 (392)
..|+++|-+++||||.+..|..+..-.-...+.-++.+. .|-.|+-.-+-..+..+ +.+.|.|||||+.|-.=+.-.
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~--kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l 88 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKG--KRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEIL 88 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC--CCCEEEEECCCCEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 069998443664066788765345620103355554466--455068632411377586168996589707789899987
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEE
Q ss_conf 40023314520123443321067788886318-76023310023335612221101232100111014532210233114
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHILLARQIG-ISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSA 170 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~~l~~~lg-i~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa 170 (392)
.+.+++|+++||++.++.-.-++-+....... +| ++|++||+|+-+.. -.+ +++++|+... .+.|+|+.++
T Consensus 89 ~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~-ppe----~i~e~l~~~~--~~~~vi~~~a 160 (187)
T COG2229 89 SRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDAL-PPE----KIREALKLEL--LSVPVIEIDA 160 (187)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC-CHH----HHHHHHHHCC--CCCCEEEEEC
T ss_conf 48764289999569996467899999885206887-89995042257789-989----9999997112--7986443442
Q ss_pred EE
Q ss_conf 67
Q gi|254780263|r 171 LC 172 (392)
Q Consensus 171 ~~ 172 (392)
..
T Consensus 161 ~e 162 (187)
T COG2229 161 TE 162 (187)
T ss_pred CC
T ss_conf 46
No 129
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.43 E-value=5.5e-13 Score=99.59 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=90.9
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH
Q ss_conf 03882799999046898878999999876444200131268686986292063789998219908999847873024677
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~ 87 (392)
++|..++|.++|--.+|||||+.+|.+. ..+. -.-|+......++.+++.++|-|+||++.|-.-
T Consensus 10 ~~~~~~KililG~~~sGKTsll~~l~~~---------~~~~------~~pT~G~~~~~~~~~~~~l~iwD~~G~e~~~~~ 74 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGE---------DIDT------ISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPY 74 (173)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHCCC---------CCCC------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCHH
T ss_conf 4457318999989997889999998399---------9897------267057778999989999999966886020058
Q ss_pred HHHHHHCCCCEEEEECCCCCC-CCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EE
Q ss_conf 987740023314520123443-321067788-88---6318760233100233356122211012321001110145-32
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGP-KPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SD 161 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~-~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~ 161 (392)
.-.-...+|++|+|||+++.. ..+.++-+. ++ ...++| ++|+.||+|+.+.-. .+ ++.+.+..... ..
T Consensus 75 ~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~p-ili~~NK~Dl~~~~~-~~----ei~~~l~l~~~~~~ 148 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGALS-EE----EIREALELDKISSH 148 (173)
T ss_pred HHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCC-HH----HHHHHHHHHHCCCC
T ss_conf 9997226653899985565788999999999998635415984-799987656777889-99----99999868744579
Q ss_pred EEECCCCEEEEE
Q ss_conf 210233114676
Q gi|254780263|r 162 DTPIIRGSALCA 173 (392)
Q Consensus 162 ~~pii~~sa~~g 173 (392)
.++++++||.+|
T Consensus 149 ~~~~~~~SAktG 160 (173)
T cd04154 149 HWRIQPCSAVTG 160 (173)
T ss_pred CCEEEEEECCCC
T ss_conf 829999889669
No 130
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=99.42 E-value=2.6e-12 Score=95.40 Aligned_cols=120 Identities=23% Similarity=0.326 Sum_probs=88.5
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC---CH
Q ss_conf 210388279999904689887899999987644420013126868698629206378999821990899984787---30
Q gi|254780263|r 6 YVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---HA 82 (392)
Q Consensus 6 ~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---H~ 82 (392)
+++-+.-+.++++|.+.+|||+|+.+++..-. +-... -.|-|.|+=-..|+.+|+.+.++||.| |.
T Consensus 219 l~~l~~g~k~ai~G~~NvGKSSLLNa~l~~Dr------AiVS~-----~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~~~ 287 (473)
T TIGR00450 219 LEKLKDGFKLAIVGKPNVGKSSLLNALLKQDR------AIVSD-----IKGTTRDVVEGDFELNGILVKLLDTAGIREHA 287 (473)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC------EEEEC-----CCCCCCCEEEEEEEECCEEEEEEECCCCCCCH
T ss_conf 99840894799964788757899998762287------05527-----66883204420577746789985146751020
Q ss_pred HHH-----HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 246-----7798774002331452012344332106778888631876023310023335
Q gi|254780263|r 83 DYV-----KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 83 ~f~-----~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
|++ .-....+.+||.+|.|+||..++++---+-+.-.+... +++++++||.|+.
T Consensus 288 ~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~~~ddf~li~~~~k~~-k~~~~V~NK~DL~ 346 (473)
T TIGR00450 288 DKVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFELIITLNKKK-KPLILVLNKIDLA 346 (473)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC-CCEEEEECCCCCC
T ss_conf 0466776899899986057347888747898810589999973217-9779997350165
No 131
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.39 E-value=5e-12 Score=93.62 Aligned_cols=82 Identities=24% Similarity=0.236 Sum_probs=60.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH-------HHHH
Q ss_conf 999990468988789999998764442001312686869862920637899982199089998478730-------2467
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA-------DYVK 86 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~-------~f~~ 86 (392)
.++++|-..+|||||+.+||+.....+. . -.-|++.-...+++++..+-|+||||-. ...+
T Consensus 2 ~V~LVG~PN~GKSTLln~LT~a~~~v~~-y-----------pfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g~ 69 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA-Y-----------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR 69 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC-C-----------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHH
T ss_conf 5999999999999999999789954369-8-----------978757477799989989999967300246333320689
Q ss_pred HHHHHHHCCCCEEEEECCCCC
Q ss_conf 798774002331452012344
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDG 107 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G 107 (392)
+++.-+..||..++|+|+.+.
T Consensus 70 ~~l~~~r~aD~il~VvD~~~~ 90 (233)
T cd01896 70 QVIAVARTADLILMVLDATKP 90 (233)
T ss_pred HHHHHHHHCCEEEEEEECCCC
T ss_conf 999998758999999847982
No 132
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.36 E-value=6.4e-12 Score=92.99 Aligned_cols=154 Identities=23% Similarity=0.221 Sum_probs=102.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC---CHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787---302467
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---HADYVK 86 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---H~~f~~ 86 (392)
++-++++++|-.++|||||+.+|++.-..- .+| --|-|.|+=..++.-+++.+.++||.| +.|.+-
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AI-----VTd------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE 283 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAI-----VTD------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVE 283 (454)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEE-----ECC------CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 458649998799886799999886678667-----428------999741037899998988999985677666734899
Q ss_pred H--H---HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 7--9---8774002331452012344332106778888631876023310023335612221101232100111014532
Q gi|254780263|r 87 N--M---ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 87 ~--m---i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
. + ...+.+||.+|+|+|+++++..+-.+.+. +...+ +++++++||.|++.... . ..+ ....
T Consensus 284 ~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~-~~~i~v~NK~DL~~~~~----~-~~~-------~~~~ 349 (454)
T COG0486 284 RIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKK-KPIIVVLNKADLVSKIE----L-ESE-------KLAN 349 (454)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCC-CCEEEEEECHHCCCCCC----C-CHH-------HCCC
T ss_conf 999999999998599899997088777601177887-24368-97799996021156432----1-012-------0267
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 2102331146764114445652123320344310252
Q gi|254780263|r 162 DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIP 198 (392)
Q Consensus 162 ~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~ 198 (392)
+.+++++|+.++ .++..|.++|.+++.
T Consensus 350 ~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 350 GDAIISISAKTG----------EGLDALREAIKQLFG 376 (454)
T ss_pred CCCEEEEEECCC----------CCHHHHHHHHHHHHH
T ss_conf 882699982576----------579999999999986
No 133
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.35 E-value=3.3e-12 Score=94.78 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=90.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.|.++|.-.+|||||+.+|........ ... ...-.-|+...+..+++++.++.|-|+||++.|-.-.-.-..
T Consensus 1 ~ivilG~~~~GKTsll~~l~~~~~~~~-------~~~-~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~~l~~~y~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK-------GLP-PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCC-------CCC-CCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHHHHHHHHCC
T ss_conf 999999999888899998875036767-------776-554035313268999989999999968987888789987428
Q ss_pred CCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 02331452012344-3321067788-88---6318760233100233356122211012321001110145322102331
Q gi|254780263|r 94 QADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 94 ~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
.+|++|+|||+++- -+.+.++.+. ++ ...++| ++|+.||+|+.+.-. .+++.+.+.......+ ..+++++++
T Consensus 73 ~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~p-ili~~NK~Dl~~~~~-~~ei~~~~~~~~~~~~-~~~~~~~~~ 149 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VEEIKEVFQDKAEEIG-RRDCLVLPV 149 (167)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHC-CCCCEEEEE
T ss_conf 9878999986686788999999999975110248962-999970667665778-9999999999999854-699899998
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
||.+|.
T Consensus 150 SAktG~ 155 (167)
T cd04160 150 SALEGT 155 (167)
T ss_pred ECCCCC
T ss_conf 878294
No 134
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.3e-12 Score=94.73 Aligned_cols=136 Identities=21% Similarity=0.284 Sum_probs=94.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH----HH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467----79
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK----NM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~----~m 88 (392)
+.+|.+|+.+.|||||..+||+...+.+ +++ |.|++-+...++++++.|.++|.||--++.. +-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~Vg-------Nwp-----GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~ 71 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVG-------NWP-----GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK 71 (653)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEC-------CCC-----CCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHH
T ss_conf 4389856998548999999856674654-------789-----8069987889973585489986897565888992089
Q ss_pred H-HH--H-HCCCCEEEEECCCCCCCCCHHHHHHH---HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 8-77--4-00233145201234433210677888---8631876023310023335612221101232100111014532
Q gi|254780263|r 89 I-TG--A-TQADGAILVCAAEDGPKPQTREHILL---ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 89 i-~g--~-~~~D~ailvVda~~G~~~QT~eh~~l---~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
+ |- + -.+|..+-||||+ +-++++++ +..+|+| +|+++|++|.....- ++-+.+++-+. .
T Consensus 72 Var~~ll~~~~D~ivnVvDA~-----nLeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~G----i~Id~~~L~~~----L 137 (653)
T COG0370 72 VARDFLLEGKPDLIVNVVDAT-----NLERNLYLTLQLLELGIP-MILALNMIDEAKKRG----IRIDIEKLSKL----L 137 (653)
T ss_pred HHHHHHHCCCCCEEEEEECCC-----HHHHHHHHHHHHHHCCCC-EEEEECCHHHHHHCC----CCCCHHHHHHH----H
T ss_conf 999998638998899960232-----377778999999985998-599961275688649----71269999998----6
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
..|+++.||..|.
T Consensus 138 GvPVv~tvA~~g~ 150 (653)
T COG0370 138 GVPVVPTVAKRGE 150 (653)
T ss_pred CCCEEEEEECCCC
T ss_conf 8988998730588
No 135
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.32 E-value=1.1e-11 Score=91.59 Aligned_cols=148 Identities=18% Similarity=0.188 Sum_probs=91.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHH------
Q ss_conf 79999904689887899999987644420013126868698629206378999821-99089998478730246------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYV------ 85 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~------ 85 (392)
-.|+++|-.+||||||+.+|++..... ..+ -.-|.|.....+.. ++..+.+.||+|--+-+
T Consensus 190 p~ValVGYTNAGKSTL~n~Lt~~~~~~---~d~---------lFaTLd~t~r~~~l~~~~~~ll~DTVGFI~~LP~~Li~ 257 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYA---ADQ---------LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVA 257 (351)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCC---CCC---------CEEECCCCCCEEECCCCCEEEEEECCCHHHHCCHHHHH
T ss_conf 769996678877899999985177641---034---------31353673204887999769998150056308867999
Q ss_pred --HHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf --779877400233145201234-433210677888863187--602331002333561222110123210011101453
Q gi|254780263|r 86 --KNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 86 --~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
+.++.-+..||..+.|||+++ ....|-.....++..+|+ +++|++.||+|++++++. +.. .. .+.
T Consensus 258 aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~-~~~----~~-----~~~ 327 (351)
T TIGR03156 258 AFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRI-ERL----EE-----GYP 327 (351)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHH-HHH----HH-----CCC
T ss_conf 99999999985989999805888478999999999999769999988999967015895778-998----73-----799
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 22102331146764114445652123320344310
Q gi|254780263|r 161 DDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
..+++||.+|. ++..|++.|.+
T Consensus 328 ---~~v~ISA~~g~----------gi~~L~~~I~~ 349 (351)
T TIGR03156 328 ---EAVFVSAKTGE----------GLDLLLEAIAE 349 (351)
T ss_pred ---CEEEEECCCCC----------CHHHHHHHHHH
T ss_conf ---87999689998----------99999999995
No 136
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.30 E-value=2e-11 Score=89.86 Aligned_cols=145 Identities=23% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH---HH-
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302---46-
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD---YV- 85 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~---f~- 85 (392)
++-++++++|-+++|||||..+|++.-..-. .| .-|=|.|+=...+..+++.++|+||.|-++ -+
T Consensus 214 ~~G~~v~i~G~PN~GKSSL~N~L~~~drAIV-----S~------ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE 282 (445)
T PRK05291 214 REGLKVVIAGRPNVGKSSLLNALLGEERAIV-----TD------IAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVE 282 (445)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEE-----CC------CCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 3598699889998768999999857874673-----18------999740402236899998999998997665574588
Q ss_pred ----HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf ----7798774002331452012344332106778888631876023310023335612221101232100111014532
Q gi|254780263|r 86 ----KNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 86 ----~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
+-....+..||..|+|+|++.+....-. .+...+.-++.|+++||+|+.+... .
T Consensus 283 ~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~---~~~~~~~~~~~i~V~NK~DL~~~~~-------------------~ 340 (445)
T PRK05291 283 KIGIERSRKAIEEADLVLLVLDASEPLTEEDK---EILEEFKNKPVIVVLNKADLTGEKI-------------------D 340 (445)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCHH---HHHHHCCCCCEEEEEEHHHCCCCCC-------------------C
T ss_conf 99999999999839999999879988872259---9998517998799985120466534-------------------7
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 210233114676411444565212332034431025
Q gi|254780263|r 162 DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 162 ~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
..+.+.+|+.++ .++..|++.|.+.+
T Consensus 341 ~~~~i~iSak~g----------~Gi~~L~~~i~~~~ 366 (445)
T PRK05291 341 GLPVIRISAKTG----------EGIDELEEALKQLV 366 (445)
T ss_pred CCCEEEEECCCC----------CCHHHHHHHHHHHH
T ss_conf 897599983788----------69999999999997
No 137
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.30 E-value=9.3e-12 Score=91.96 Aligned_cols=98 Identities=23% Similarity=0.298 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC--------HHHHHHHHHHHHCC
Q ss_conf 8878999999876444200131268686986292063789998219908999847873--------02467798774002
Q gi|254780263|r 24 GKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH--------ADYVKNMITGATQA 95 (392)
Q Consensus 24 GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH--------~~f~~~mi~g~~~~ 95 (392)
|||||+.+|++... +.+. ..-|.|.+.....+.+++..+.|+||||- ..........+..+
T Consensus 1 GKSsLiN~L~~~~~------~~v~-----~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~~~~~ 69 (106)
T pfam01926 1 GKSTLINALTGKKR------AIVS-----DYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEAIEEA 69 (106)
T ss_pred CHHHHHHHHHCCCC------EEEC-----CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 91279999978885------5552-----889988463558998899889998378732265046788899999723457
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 33145201234433210677888863187602331002
Q gi|254780263|r 96 DGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNK 133 (392)
Q Consensus 96 D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNK 133 (392)
|.+++|+||.++...+..+.+..+...+.| +++++||
T Consensus 70 d~il~viD~~~~~~~~d~~~~~~l~~~~~p-~iiv~NK 106 (106)
T pfam01926 70 DLILHVVDASEGLTEEDLEILDLLLELGKP-VILVLNK 106 (106)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEC
T ss_conf 379999999999998999999999986998-8999939
No 138
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.29 E-value=8e-12 Score=92.37 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=84.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|+++|.-.+|||||+.+|.... .... --|+...+..+.+++..+.|.|+||++.|-.-.-.-...
T Consensus 2 i~ilG~~~vGKTsll~~l~~~~---------~~~~------~pTig~~~~~i~~~~~~l~iwDt~G~~~~~~~~~~y~~~ 66 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE---------VVTT------IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYEN 66 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCCC---------CCCC------CCEECCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHCC
T ss_conf 9999999998899999995399---------8874------456074089998488999999889972214489987276
Q ss_pred CCCEEEEECCCCC-CCCCHHHHHH-HHH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEEECCCC
Q ss_conf 2331452012344-3321067788-886---318760233100233356122211012321001110145-322102331
Q gi|254780263|r 95 ADGAILVCAAEDG-PKPQTREHIL-LAR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRG 168 (392)
Q Consensus 95 ~D~ailvVda~~G-~~~QT~eh~~-l~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~pii~~ 168 (392)
+|++|+|+|+++- -+...++.+. +.. .-++| ++|+.||+|+.+.... + ++.+.+..... ...++++++
T Consensus 67 a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iliv~NK~Dl~~~~~~-~----ei~~~l~~~~~~~~~~~~~~~ 140 (158)
T cd00878 67 TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALSV-S----ELIEKLGLEKILGRRWHIQPC 140 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCCCCCH-H----HHHHHHHHHHHCCCCCEEEEE
T ss_conf 877689983798889999999999998660557653-8987605476657899-9----999998587510799899999
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
||.+|-
T Consensus 141 SAktg~ 146 (158)
T cd00878 141 SAVTGD 146 (158)
T ss_pred ECCCCC
T ss_conf 888792
No 139
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.28 E-value=1.9e-11 Score=90.06 Aligned_cols=144 Identities=18% Similarity=0.123 Sum_probs=91.4
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 38827999990468988789999998764442001312686869862920637899982199089998478730246779
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
.|+..+|.++|--++|||||+.+|.... ... ..-|+-..+..+.+++..+++-|++|++.|-.-.
T Consensus 12 ~~k~~KililG~~~sGKTsil~~l~~~~---------~~~------~~pT~G~~~~~i~~~~~~~~iwD~~G~e~~~~~~ 76 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLLGE---------VVH------TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSW 76 (174)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCC---------CCC------CCCCCCCCEEEEEECCEEEEEEECCCCCCCCCHH
T ss_conf 8977999999899998899999997399---------277------1672360469999788899999899986566226
Q ss_pred HHHHHCCCCEEEEECCCCC-CCCCHHHHHH-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCC-EEEEEEEEEEE
Q ss_conf 8774002331452012344-3321067788-8863---187602331002333561222110123210-01110145322
Q gi|254780263|r 89 ITGATQADGAILVCAAEDG-PKPQTREHIL-LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIR-DLLKEHKYSDD 162 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~-~~l~~~~~~~~ 162 (392)
-.-...+|++|+|||+++- -....++++. ++.. .++| ++|+.||.|+.+.-. .+++.+++. +.++ ..+
T Consensus 77 ~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-ili~~NK~Dl~~~~~-~~ei~~~l~l~~~~----~~~ 150 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PAEISESLGLTSIR----DHT 150 (174)
T ss_pred HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCC-HHHHHHHHHHHHHH----CCC
T ss_conf 777057753799997678889999999999997261016982-899995555655789-99999997477763----598
Q ss_pred EECCCCEEEEE
Q ss_conf 10233114676
Q gi|254780263|r 163 TPIIRGSALCA 173 (392)
Q Consensus 163 ~pii~~sa~~g 173 (392)
+.++++||.+|
T Consensus 151 ~~~~~~SAktG 161 (174)
T cd04153 151 WHIQGCCALTG 161 (174)
T ss_pred CEEEEEECCCC
T ss_conf 09999668589
No 140
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=2.9e-11 Score=88.89 Aligned_cols=118 Identities=23% Similarity=0.379 Sum_probs=88.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---------H-
Q ss_conf 799999046898878999999876444200131268686986292063789998219908999847873---------0-
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------A- 82 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------~- 82 (392)
.-||++|.-..|||||+.+|++... .+++..+ -|.|..+-| |++++. +.|+|.||. +
T Consensus 25 ~EIaF~GRSNVGKSSlIN~l~~~k~-----LArtSkt-----PGrTq~iNf--f~~~~~-~~lVDlPGYGyAkv~k~~~e 91 (200)
T COG0218 25 PEIAFAGRSNVGKSSLINALTNQKN-----LARTSKT-----PGRTQLINF--FEVDDE-LRLVDLPGYGYAKVPKEVKE 91 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-----EEECCCC-----CCCCCEEEE--EEECCC-EEEEECCCCCCCCCCHHHHH
T ss_conf 6799981686668999999967863-----5565799-----985423679--983585-79981799540328999999
Q ss_pred ---HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf ---24677987740023314520123443321067788886318760233100233356122211
Q gi|254780263|r 83 ---DYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLD 144 (392)
Q Consensus 83 ---~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~ 144 (392)
+++-+-+..-.+...++++||++.++...-+|-+..+...++| ++|+.||||.++..++..
T Consensus 92 ~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k 155 (200)
T COG0218 92 KWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNK 155 (200)
T ss_pred HHHHHHHHHHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHH
T ss_conf 9999999999635222489999978999868799999999975998-699997110377467888
No 141
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.26 E-value=3.7e-12 Score=94.45 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=90.2
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH-H--HHH---
Q ss_conf 0468988789999998764442001312686869862920637899982199089998478730246779-8--774---
Q gi|254780263|r 19 GHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM-I--TGA--- 92 (392)
Q Consensus 19 Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m-i--~g~--- 92 (392)
|+.+.|||||..+||+.....+ +++ |.|+|-...++.++++.|+|||+||=-+|.... . .-+
T Consensus 1 GNPNVGKStlFN~LTG~~~~vG-------NwP-----G~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~dy 68 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQKVG-------NWP-----GVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVARDY 68 (733)
T ss_pred CCCCCHHHHHHHHHHCCCEEEE-------ECC-----CCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 9998158999987415870787-------358-----8707877889752462789984487300589987427999899
Q ss_pred ---HCCCCEEEEECCCCCCCCCHHHHHHH---HHHCCCCCEEEEECCCCCCCCHH-HHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf ---00233145201234433210677888---86318760233100233356122-211012321001110145322102
Q gi|254780263|r 93 ---TQADGAILVCAAEDGPKPQTREHILL---ARQIGISSIVVYMNKVDAVDDDE-LLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 93 ---~~~D~ailvVda~~G~~~QT~eh~~l---~~~lgi~~iIv~iNKmD~v~~~~-~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
-.+|..|-||||. +=++-+.+ +..+|+| +|+|+|++|.+..+- +.| .+.+++.| .+|+
T Consensus 69 l~~e~~DLv~nVVDA~-----nLERnL~LTLQL~E~G~p-~i~~LN~~DeA~k~GI~Id--~~~Lee~L-------GvPV 133 (733)
T TIGR00437 69 LLNEKPDLVVNVVDAS-----NLERNLYLTLQLLELGIP-MILALNLVDEAEKKGIRID--EEKLEERL-------GVPV 133 (733)
T ss_pred HHCCCCCEEEEEECHH-----HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHCCCEEC--HHHHHHHC-------CCCE
T ss_conf 7538996799972566-----777899999999971625-8568726789977296312--57775433-------8652
Q ss_pred CCCEEEEEE
Q ss_conf 331146764
Q gi|254780263|r 166 IRGSALCAL 174 (392)
Q Consensus 166 i~~sa~~g~ 174 (392)
+|+||..|.
T Consensus 134 v~~~A~~g~ 142 (733)
T TIGR00437 134 VPTSATEGR 142 (733)
T ss_pred EEEEEEECC
T ss_conf 565321057
No 142
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.25 E-value=3.4e-12 Score=94.64 Aligned_cols=82 Identities=32% Similarity=0.440 Sum_probs=69.9
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 10000000135544543014874245348967999506874321254121001----21144321001366641124543
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRA 283 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~ 283 (392)
|+|.|..+-+.+++|++.+|||.||+|++||++.++..+++....+|.+++.+ +.++++|.|||+|+++ | .+
T Consensus 1 f~mlv~~~~~d~~~Gri~~~RV~sG~lk~gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGDIvai~--G--l~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--G--IE 76 (86)
T ss_pred CCEEEEEEECCCCCCEEEEEEEECCCCCCCCEEEEECCCCCEEECCCEEEEEEECCCCEEEEEECCCCEEEEC--C--CC
T ss_conf 9689998101887755999998469517999899961678267622307689606985697187599999994--8--88
Q ss_pred EEECHHEEEC
Q ss_conf 2202117732
Q gi|254780263|r 284 DVPRGRVVCA 293 (392)
Q Consensus 284 di~rGdvl~~ 293 (392)
+++.||+||+
T Consensus 77 ~~~iGdTl~D 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCCCCCCCCC
T ss_conf 8865471369
No 143
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.23 E-value=2.6e-11 Score=89.17 Aligned_cols=153 Identities=23% Similarity=0.294 Sum_probs=111.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH-HH--H--CCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC---CHHH
Q ss_conf 79999904689887899999987644-42--0--013126868698629206378999821990899984787---3024
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE-EK--K--EYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG---HADY 84 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~-~~--~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG---H~~f 84 (392)
.+++++||.++|||||+..++..... .. . ...+.+.....+.+|.++. +.. ++| ++.++++|+|| |.+|
T Consensus 4 ~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~w-~~~~~~~d~~G~~~~~~~ 80 (186)
T TIGR00231 4 IKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTIT-GAT-FQW-GYKFNLLDTPGLHRQEDY 80 (186)
T ss_pred EEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEE-EEE-EEC-CEEEEEEECCCCHHHHHH
T ss_conf 05899734776604555445410120010232333200000011345580234-343-102-427898625771135555
Q ss_pred -------HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEEEEE
Q ss_conf -------67798774002331452012344332106778888631876023310023335612-2211012321001110
Q gi|254780263|r 85 -------VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDLLKE 156 (392)
Q Consensus 85 -------~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~l~~ 156 (392)
.+...+.+...|.+++++++.++.++++.+....+...+++ ++++.||+|+.+.. .++..........+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 159 (186)
T TIGR00231 81 DALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVP-ILLVGNKIDLKDEKPGYFVDLKPHLASLFAK 159 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCEEEHHHHHHHHHHH
T ss_conf 445433223445444333333322211100102567787532212741-6998513365546754010000345555554
Q ss_pred EEEEEEEE-CCCCEEEE
Q ss_conf 14532210-23311467
Q gi|254780263|r 157 HKYSDDTP-IIRGSALC 172 (392)
Q Consensus 157 ~~~~~~~p-ii~~sa~~ 172 (392)
.. ..| +++.++..
T Consensus 160 ~~---~~~~~~~~~~~~ 173 (186)
T TIGR00231 160 LN---GEPHFIPLSAET 173 (186)
T ss_pred HC---CCCCEEECCHHH
T ss_conf 23---664011110011
No 144
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.22 E-value=6.9e-11 Score=86.58 Aligned_cols=144 Identities=22% Similarity=0.308 Sum_probs=104.6
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
-|.+-+++.|-...|||||+..|.+.+.++.-. |..--||+- ..+.+++|||.||- | +-.|+
T Consensus 37 pPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~---------~i~GPiTvv------s~K~rRiTfiEc~n--D-i~smi 98 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS---------DIKGPITVV------TGKKRRLTFIECPN--D-INAMI 98 (225)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC---------CCCCCEEEE------ECCCEEEEEEECCC--H-HHHHH
T ss_conf 999699998989977889999999998544375---------578887999------46842689997486--0-99998
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 77400233145201234433210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
..+..||.+||+|||+-|.+-.|-|.+.+++..|.|.++-++|.+|.....+.....+..++.-+-.-- -+++..++.|
T Consensus 99 D~AKvADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k~lrk~KK~lk~RFwtE~-y~gaKlFyls 177 (225)
T cd01882 99 DIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-YQGAKLFYLS 177 (225)
T ss_pred HHHHHHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 788764336888616655352089999999975999437885443101557889999999999999986-5995688633
Q ss_pred EEE
Q ss_conf 467
Q gi|254780263|r 170 ALC 172 (392)
Q Consensus 170 a~~ 172 (392)
.+.
T Consensus 178 g~~ 180 (225)
T cd01882 178 GIV 180 (225)
T ss_pred CCC
T ss_conf 532
No 145
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=6.6e-11 Score=86.70 Aligned_cols=141 Identities=19% Similarity=0.210 Sum_probs=83.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
||.++|.-.+|||||+.+|...... ... -.-|+......+..++..+++.|++|+..|-.-.-.=..
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~-------~~~------~~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~lw~~y~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-------SQI------IVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCC-------CCC------CCCCCCEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHC
T ss_conf 9999999999889999999728987-------564------168507578999839988999985887442055898705
Q ss_pred CCCCEEEEECCCCC-CCCCHHHHHHHH-H---H--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEEEC
Q ss_conf 02331452012344-332106778888-6---3--18760233100233356122211012321001110145-322102
Q gi|254780263|r 94 QADGAILVCAAEDG-PKPQTREHILLA-R---Q--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPI 165 (392)
Q Consensus 94 ~~D~ailvVda~~G-~~~QT~eh~~l~-~---~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~pi 165 (392)
.+|++|+|||+++- -+...++.+..+ . . -++| ++++.||+|+.+... .+ ++.+.|....+ .....+
T Consensus 68 ~~~~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~P-iLI~~NK~D~~~~~~-~~----ei~~~l~l~~~~~~~~~i 141 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDKPWHI 141 (162)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCE-EEEEEECCCCCCCCC-HH----HHHHHHCHHHHCCCCEEE
T ss_conf 674489997076388899999999999717655179845-999981477889999-99----999885866524896499
Q ss_pred CCCEEEEE
Q ss_conf 33114676
Q gi|254780263|r 166 IRGSALCA 173 (392)
Q Consensus 166 i~~sa~~g 173 (392)
+++||++|
T Consensus 142 ~~~SA~tG 149 (162)
T cd04157 142 FASNALTG 149 (162)
T ss_pred EEEECCCC
T ss_conf 99789789
No 146
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.20 E-value=4.4e-11 Score=87.78 Aligned_cols=139 Identities=24% Similarity=0.216 Sum_probs=85.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899982199--089998478730246779877
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~g 91 (392)
.|+++|.-..|||||+.++... ...++....+..+.....+..++ ..+.|.|+||+++|-.-.-..
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~------------~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 68 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQN------------KFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLY 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 9899997997799999999619------------9998747741355678999999999999999789872046788998
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHH----HH-HH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 40023314520123443321067788----88-63--1876023310023335612221101232100111014532210
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHIL----LA-RQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~~----l~-~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
...+|++++|.|++. +.+-+++. .+ +. .++| ++++-||+|+.+..+ ...++.+++.+.. +.|
T Consensus 69 ~~~ad~~iivfd~~~---~~S~~~i~~~~~~i~~~~~~~~p-iilvgnK~Dl~~~~~---i~~~e~~~~a~~~----~~~ 137 (162)
T pfam00071 69 YRGAQGFLLVYDITS---RDSFENVKKWLEEILRHADDNVP-IVLVGNKCDLEDQRV---VSTEEGEALAKEL----GLP 137 (162)
T ss_pred HCCCCCCEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHCCC---CCHHHHHHHHHHH----CCE
T ss_conf 625765504234898---89999999999999985798862-889975247465188---9999999999980----997
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++++||.+|.+
T Consensus 138 y~e~Sak~g~g 148 (162)
T pfam00071 138 FMETSAKTNEN 148 (162)
T ss_pred EEEECCCCCCC
T ss_conf 99973788829
No 147
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.19 E-value=7.2e-11 Score=86.47 Aligned_cols=140 Identities=16% Similarity=0.106 Sum_probs=84.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|+++|--.+|||||+.++.... ..++ .=-||...+.....++..+.+-|+||++.|-.-.-.-...
T Consensus 2 I~llG~~~~GKTsll~~~~~~~------------f~~~--~~pTig~~~~~i~~~~~~l~iwDt~G~e~~~~l~~~y~~~ 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ------------FSED--TIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRG 67 (159)
T ss_pred EEEECCCCCCHHHHHHHHHCCC------------CCCC--CCCCCCEEEEEEEECCEEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 8999999986999999997599------------9886--1673250589999899999999798358779999987468
Q ss_pred CCCEEEEECCCCCC-CCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCC-EEEEEEEEEEEEECCCC
Q ss_conf 23314520123443-321067788-88---63187602331002333561222110123210-01110145322102331
Q gi|254780263|r 95 ADGAILVCAAEDGP-KPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIR-DLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 95 ~D~ailvVda~~G~-~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~-~~l~~~~~~~~~pii~~ 168 (392)
+|++++|+|+++-- ....++.+. +. ...++| ++++.||+|+.+.....+ +.+++. ..+. ..+++++++
T Consensus 68 ~~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~p-iliv~NK~Dl~~~~~~~~-i~~~~~~~~~~----~~~~~~~~~ 141 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSVDE-LIEQMNLKSIT----DREVSCYSI 141 (159)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCCCHHH-HHHHHHHHHHH----CCCCEEEEE
T ss_conf 636875157787889999999999998544348982-898883567643478999-99999999873----499879999
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
||.+|.
T Consensus 142 SAktg~ 147 (159)
T cd04159 142 SCKEKT 147 (159)
T ss_pred ECCCCC
T ss_conf 796896
No 148
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.18 E-value=6.3e-11 Score=86.80 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|..++|.++|.-++|||||+.+|... .. .. .-.|+......++.++..+++-|++|++.|-.-.-
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~--~~------~~-------~~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~l~~ 71 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLG--QS------VT-------TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR 71 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CC-------CCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHH
T ss_conf 88889999999999989999999669--98------76-------02626700799998988999998999974660657
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEE
Q ss_conf 774002331452012344-3321067788-88---6318760233100233356122211012321001110145-3221
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDT 163 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~ 163 (392)
.=...+|++++|||+++- -..+.++-+. ++ ...++| ++|+.||.|+.+.-. .+++ .+.+..... ...+
T Consensus 72 ~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~p-ilI~~NK~Dl~~~~~-~~ei----~~~l~l~~~~~~~~ 145 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-PHEI----QEKLGLTRIRDRNW 145 (168)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCE-EEEEEECCCCCCCCC-HHHH----HHHHCHHHHHCCCC
T ss_conf 64378866899983776789999999999997145227986-999997566777889-9999----99978765517980
Q ss_pred ECCCCEEEEEE
Q ss_conf 02331146764
Q gi|254780263|r 164 PIIRGSALCAL 174 (392)
Q Consensus 164 pii~~sa~~g~ 174 (392)
.++++||.+|-
T Consensus 146 ~i~~~SA~tG~ 156 (168)
T cd04149 146 YVQPSCATSGD 156 (168)
T ss_pred EEEEEECCCCC
T ss_conf 99980687896
No 149
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.17 E-value=2.2e-10 Score=83.47 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=90.6
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|...+|.++|--.|||||++.+|... . ... ---|+......+++++..+++-|.+|++.|-.---
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~~~--~-------~~~------~~PT~Gfn~e~i~~~~~~~~~wDvgG~~~~R~lW~ 81 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDD--R-------LAQ------HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCC--C-------CCE------ECCCCCCCEEEEEECCEEEEEEECCCCCCCCCCHH
T ss_conf 77048999906999889999998079--9-------531------52655874599998999999998999845554388
Q ss_pred HHHHCCCCEEEEECCCC-CCCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCC---HHHHHHCCCCCCEEEEEEEE--
Q ss_conf 77400233145201234-4332106778888----63187602331002333561---22211012321001110145--
Q gi|254780263|r 90 TGATQADGAILVCAAED-GPKPQTREHILLA----RQIGISSIVVYMNKVDAVDD---DELLDISEYEIRDLLKEHKY-- 159 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~-G~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~---~~~~~~i~~~i~~~l~~~~~-- 159 (392)
.-...+|+.|+|||+++ .-+.++++.+.-+ ...++| +.|+.||.|+.+. ++..+.. .+..+......
T Consensus 82 ~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~P-lLIlaNK~Dl~~a~~~~ei~~~L--~L~~~~~~~~~~~ 158 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVSEEELRQAL--GLYGTTTGKGVSL 158 (190)
T ss_pred HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHC--CCCCCCCCCCCCC
T ss_conf 88431137999997767789999999999998555006980-89998666776798999999883--9842015544334
Q ss_pred ----EEEEECCCCEEEEE
Q ss_conf ----32210233114676
Q gi|254780263|r 160 ----SDDTPIIRGSALCA 173 (392)
Q Consensus 160 ----~~~~pii~~sa~~g 173 (392)
...+.+.++||++|
T Consensus 159 ~~~~~r~~~i~~csA~tG 176 (190)
T cd00879 159 KVSGIRPIEVFMCSVVKR 176 (190)
T ss_pred CCCCCCCEEEEEEEEECC
T ss_conf 545776149996550679
No 150
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.15 E-value=2.7e-10 Score=82.95 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=88.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|..++|.++|--.+|||||+.+|... .. ... --|+......++.++..+++-|++|++.|- .+-
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~--~~------~~~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r-~l~ 74 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLG--ES------VTT-------IPTIGFNVETVTYKNISFTVWDVGGQDKIR-PLW 74 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CCC-------CCCCCCEEEEEEECCEEEEEEECCCCCCCC-HHH
T ss_conf 88899999988999989999999659--97------775-------797881079999898999999899985455-367
Q ss_pred -HHHHCCCCEEEEECCCCC-CCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE-EEEEEEEEEE
Q ss_conf -774002331452012344-332106778888----631876023310023335612221101232100-1110145322
Q gi|254780263|r 90 -TGATQADGAILVCAAEDG-PKPQTREHILLA----RQIGISSIVVYMNKVDAVDDDELLDISEYEIRD-LLKEHKYSDD 162 (392)
Q Consensus 90 -~g~~~~D~ailvVda~~G-~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~-~l~~~~~~~~ 162 (392)
.=...||++|+|||+++- -+.+.++.+.-+ ...++| ++++.||.|+.+.-. .+++.+++.- .++ ...
T Consensus 75 ~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-iLil~NK~Dl~~~~~-~~ei~~~l~l~~~~----~~~ 148 (175)
T smart00177 75 RHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AAEITEKLGLHSIR----DRN 148 (175)
T ss_pred HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEEECCCCCCCCC-HHHHHHHHCHHHHC----CCC
T ss_conf 775577618999986687789999999999996315316986-999984566767889-99999996866540----797
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780263|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
+.+.++||.+|-
T Consensus 149 ~~i~~~SA~tG~ 160 (175)
T smart00177 149 WYIQPTCATSGD 160 (175)
T ss_pred EEEEEEECCCCC
T ss_conf 599982687896
No 151
>PRK11058 putative GTPase HflX; Provisional
Probab=99.14 E-value=1.3e-10 Score=84.81 Aligned_cols=165 Identities=19% Similarity=0.141 Sum_probs=99.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCH---------
Q ss_conf 79999904689887899999987644420013126868698629206378999821-99089998478730---------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHA--------- 82 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~--------- 82 (392)
-.++++|-.+||||||+.+|++..- ....++. -|.|.....+.. ++..+-+.||.|--
T Consensus 198 ~~ValVGYTNAGKSTL~n~Lt~~~v---~~~d~LF---------ATLD~t~R~~~l~~~~~~lltDTVGFI~~LP~~Lve 265 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV---YAADQLF---------ATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVA 265 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC---CCCCCCC---------CCCCCCEEEEECCCCCEEEEECCCHHHHHCCHHHHH
T ss_conf 7699973577778999877752887---6325450---------147862026786999869997150666519899999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 2467798774002331452012344-33210677888863187--60233100233356122211012321001110145
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAEDG-PKPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
.| +.++.-+..||.-+.|||+++- +..|-.....++..+|+ ++.|++.||+|++++.+. .+ ... ..++
T Consensus 266 AF-~sTLeEv~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~--~~----~~~--~~~~ 336 (426)
T PRK11058 266 AF-KATLQETRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RI----DRD--EENK 336 (426)
T ss_pred HH-HHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHH--HH----HHH--HCCC
T ss_conf 99-999999963988999984999379999999999999759999977999977023896445--56----665--3399
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECC
Q ss_conf 322102331146764114445652123320344310252222100001100000
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIE 213 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~~~~~p~r~~I~ 213 (392)
. ..+.+||.+| .+++.|+++|...++... ..-.+.+|.+
T Consensus 337 p---~~V~iSA~tg----------~Gi~~L~~~I~~~L~~~~--~~~~l~iP~~ 375 (426)
T PRK11058 337 P---IRVWLSAQTG----------AGIPLLFQALTERLSGEV--AQHTLRLPPQ 375 (426)
T ss_pred C---CEEEEECCCC----------CCHHHHHHHHHHHCCCCC--EEEEEEECHH
T ss_conf 8---7799978999----------899999999998703376--8999997865
No 152
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.12 E-value=3.2e-10 Score=82.48 Aligned_cols=139 Identities=17% Similarity=0.114 Sum_probs=84.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467798774
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
+.|.++|--.+|||||+.+|.... ..+. --|+......++.++..+++-|++||+.|-.-.-.=.
T Consensus 1 ~KililG~~~sGKTsll~~l~~~~--------~~~~-------~pT~g~~~~~~~~~~~~l~iwD~~G~~~~r~l~~~Y~ 65 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGE--------IVTT-------IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF 65 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--------CCCC-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHC
T ss_conf 999999999999899999997299--------6775-------8968701799998989999997899721465678647
Q ss_pred HCCCCEEEEECCCCC-CCCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCC--CEEEEEEEEEEEEEC
Q ss_conf 002331452012344-33210677888----86318760233100233356122211012321--001110145322102
Q gi|254780263|r 93 TQADGAILVCAAEDG-PKPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEYEI--RDLLKEHKYSDDTPI 165 (392)
Q Consensus 93 ~~~D~ailvVda~~G-~~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i--~~~l~~~~~~~~~pi 165 (392)
..++++++|||+++- -....++.+.- ....++| ++++.||+|+.+.-.. +++.+++ .. ++. ..+.+
T Consensus 66 ~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-ili~~NK~Dl~~~~~~-~ei~~~l~l~~-~~~----~~~~i 138 (159)
T cd04150 66 QNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMSA-AEVTDKLGLHS-LRN----RNWYI 138 (159)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEEECCCCCCCCCH-HHHHHHHCHHH-HHC----CCEEE
T ss_conf 68738999997777789999999999996235336982-9999975667789899-99999968666-637----98599
Q ss_pred CCCEEEEE
Q ss_conf 33114676
Q gi|254780263|r 166 IRGSALCA 173 (392)
Q Consensus 166 i~~sa~~g 173 (392)
+++||.+|
T Consensus 139 ~~~SA~tG 146 (159)
T cd04150 139 QATCATSG 146 (159)
T ss_pred EEEECCCC
T ss_conf 98268679
No 153
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.11 E-value=2.7e-10 Score=82.86 Aligned_cols=139 Identities=17% Similarity=0.131 Sum_probs=84.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|.++|--.+|||||+.++... ..+.. --|+......+.+++.++.+-|++||+.|-.-.-.=...
T Consensus 2 il~lG~~~~GKTsll~~~~~~---------~~~~~------~pTig~~~~~i~~~~~~~~iwD~~G~e~~r~~~~~y~~~ 66 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLG---------EVVTT------IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSN 66 (158)
T ss_pred EEEECCCCCCHHHHHHHHHCC---------CCCCC------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 999999999899999999709---------96775------784882469999898899999679862446278874667
Q ss_pred CCCEEEEECCCCCC-CCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCC-EEEEEEEEEEEEECCCC
Q ss_conf 23314520123443-3210677888----863187602331002333561222110123210-01110145322102331
Q gi|254780263|r 95 ADGAILVCAAEDGP-KPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEYEIR-DLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 95 ~D~ailvVda~~G~-~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~-~~l~~~~~~~~~pii~~ 168 (392)
+|++++|+|+++-- ....++.+.- ....++| ++++.||+|+.+.-...+ +...+. +.++ ...++++++
T Consensus 67 ~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-iliv~NK~Dl~~~~~~~~-i~~~l~l~~~~----~~~~~~~~t 140 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALSEAE-ISEKLGLSELK----DRTWSIFKT 140 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHH-HHHHHHHHHHH----CCCCEEEEE
T ss_conf 889999974578789999999999998346536981-999997667765779999-99998598741----699689996
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
||.+|.
T Consensus 141 SA~tG~ 146 (158)
T cd04151 141 SAIKGE 146 (158)
T ss_pred ECCCCC
T ss_conf 787893
No 154
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.11 E-value=4.4e-10 Score=81.60 Aligned_cols=143 Identities=18% Similarity=0.121 Sum_probs=87.5
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|..++|.++|--.+|||||+.+|... .. ... --|+......+++++..+++-|++|++.|-.-.-
T Consensus 15 kk~~kililGl~~sGKTsil~~l~~~--~~------~~~-------~pTvg~~~~~~~~~~~~l~iwD~~Gqe~~r~lw~ 79 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLG--EV------VTT-------IPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWR 79 (182)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC--CC------CCC-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHH
T ss_conf 87479999967998899999999629--97------773-------7868845699997888999998999845474787
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHHHHH-H---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE-EEEE
Q ss_conf 774002331452012344-33210677888-8---6318760233100233356122211012321001110145-3221
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREHILL-A---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDT 163 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~l-~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~-~~~~ 163 (392)
.=...+|++|+|||+++- -..+.++.+.- + ...++| ++|+.||.|+.+.-. .+++.++ +..... +.++
T Consensus 80 ~yy~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~p-iLi~~NK~Dl~~a~~-~~ei~~~----l~l~~~~~~~~ 153 (182)
T PTZ00133 80 HYYQNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAV-LLVFANKQDLPNAMS-TTEVTEK----LGLHSVRQRNW 153 (182)
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEECCCCCCCCCC-HHHHHHH----HCHHHHHCCCC
T ss_conf 60567644999996678789999999999997144224885-999970668778889-9999999----69555615995
Q ss_pred ECCCCEEEEE
Q ss_conf 0233114676
Q gi|254780263|r 164 PIIRGSALCA 173 (392)
Q Consensus 164 pii~~sa~~g 173 (392)
.+.++||.+|
T Consensus 154 ~i~~~SA~tG 163 (182)
T PTZ00133 154 YIQGCCATTA 163 (182)
T ss_pred EEEEEECCCC
T ss_conf 8998257589
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.11 E-value=1.4e-10 Score=84.69 Aligned_cols=139 Identities=20% Similarity=0.155 Sum_probs=82.2
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 9904689887899999987644420013126868698629206378999821--99089998478730246779877400
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
++|+.++|||||+.++++..-. .+.....+++.....+.. ..+.++|.|+|||.+|......-...
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV------------PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRG 68 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCC------------CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9294996889999999719888------------7646871578999999999999999999858951156789999753
Q ss_pred CCCEEEEECCCCCCCCCHHHHH--HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 2331452012344332106778--88863---187602331002333561222110123210011101453221023311
Q gi|254780263|r 95 ADGAILVCAAEDGPKPQTREHI--LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 95 ~D~ailvVda~~G~~~QT~eh~--~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
+|++++|+|+++...-+..+.+ .+... .++| ++++.||.|+.+........ .... +.. ....|++++|
T Consensus 69 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~~~~--~~~~-~~~---~~~~~~~~~S 141 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE--LAEQ-LAK---ELGVPYFETS 141 (157)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCHHCCCCCHHH--HHHH-HHH---HCCCEEEEEC
T ss_conf 579999986588888999999999999975258984-99998535615406688999--9999-998---7898699984
Q ss_pred EEEEE
Q ss_conf 46764
Q gi|254780263|r 170 ALCAL 174 (392)
Q Consensus 170 a~~g~ 174 (392)
+..+.
T Consensus 142 a~~~~ 146 (157)
T cd00882 142 AKTGE 146 (157)
T ss_pred CCCCC
T ss_conf 78883
No 156
>COG2262 HflX GTPases [General function prediction only]
Probab=99.09 E-value=3.9e-10 Score=81.89 Aligned_cols=154 Identities=20% Similarity=0.157 Sum_probs=96.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHH-----
Q ss_conf 82799999046898878999999876444200131268686986292063789998219-908999847873024-----
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADY----- 84 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f----- 84 (392)
..-.|+++|-.+||||||..+||+...- ....+. -|.+.....+..+ ++.+-+-||-|--+=
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~---~~d~LF---------ATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~L 258 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVY---VADQLF---------ATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPL 258 (411)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHCCCEE---CCCCCC---------CCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHH
T ss_conf 9975898732344499999887245713---046664---------2105740489807996499865756715598679
Q ss_pred ---HHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHCCC--CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf ---67798774002331452012344-33210677888863187--6023310023335612221101232100111014
Q gi|254780263|r 85 ---VKNMITGATQADGAILVCAAEDG-PKPQTREHILLARQIGI--SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 85 ---~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
.+.++--...||..+.||||++. +..|-.....++..+|+ +++|++.||+|++.++.... .+....
T Consensus 259 V~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~----~~~~~~---- 330 (411)
T COG2262 259 VEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILA----ELERGS---- 330 (411)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHH----HHHHCC----
T ss_conf 999999898762277799974068851899999999999974889997899976410157322234----566348----
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 5322102331146764114445652123320344310252
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIP 198 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~ 198 (392)
+ ..+++||.+|. +++.|.+.|...++
T Consensus 331 --~--~~v~iSA~~~~----------gl~~L~~~i~~~l~ 356 (411)
T COG2262 331 --P--NPVFISAKTGE----------GLDLLRERIIELLS 356 (411)
T ss_pred --C--CEEEEEECCCC----------CHHHHHHHHHHHHH
T ss_conf --9--74899806675----------98999999999863
No 157
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=99.08 E-value=2.4e-10 Score=83.26 Aligned_cols=136 Identities=26% Similarity=0.321 Sum_probs=90.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCCEEEEEEECCC----CHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-9821990899984787----30246779
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDKRFYSHIDCPG----HADYVKNM 88 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~~~i~iiD~PG----H~~f~~~m 88 (392)
+|+++|.+.+|||||+..|-+. -+...=+ ..||..+ ..||||| |+.|-...
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~----------------------~~~YKKTQAvE~~~k--~~IDTPGEY~enr~~Y~AL 57 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE----------------------EIKYKKTQAVEYKDK--EAIDTPGEYVENRRYYSAL 57 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCC----------------------CCCEEEEEEEEECCC--CCCCCCCCCCCCCCHHHHH
T ss_conf 1788715888744354311687----------------------321023344542588--8655985001575237888
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCC-CEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 8774002331452012344332106778888631876-023310023335612221101232100111014532210233
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS-SIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~-~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
+.-++-||.-+||-+|.++...-. ...+.. ..+ +.|=.|+|+|+.+.+...+..+. +|.+.|. -+++.
T Consensus 58 ~vtaaDAd~i~lV~~a~~~~~~f~---PgF~~~-f~kK~~IG~vTK~DLA~~d~~i~r~~~----~L~~AG~---~~iF~ 126 (144)
T TIGR02528 58 IVTAADADVIALVQSATDEESRFS---PGFASI-FVKKEVIGIVTKIDLAEADKDIERAKR----LLETAGA---EKIFE 126 (144)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCC---CCCCCC-CCCCCEEEEEEECCCCCCHHHHHHHHH----HHHHCCC---CCCEE
T ss_conf 888721023667735776422378---500023-678863478840378877347999999----9872365---43316
Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 114676411444565212332034431
Q gi|254780263|r 168 GSALCALQGTNKELGEDSIHALMKAVD 194 (392)
Q Consensus 168 ~sa~~g~~~~n~~~~~~~~~~Ll~~i~ 194 (392)
+|... ..+++.|++.|.
T Consensus 127 ~~~~d----------~~G~~~l~~yL~ 143 (144)
T TIGR02528 127 ISSVD----------EKGIEELVDYLN 143 (144)
T ss_pred ECCCC----------CHHHHHHHHHHC
T ss_conf 50778----------045899999844
No 158
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.08 E-value=4e-10 Score=81.85 Aligned_cols=150 Identities=17% Similarity=0.273 Sum_probs=86.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC-----CH------
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787-----30------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG-----HA------ 82 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG-----H~------ 82 (392)
-++++|-..+|||||+.+|+....+.+.. ..++ .+=.++...+. +.+.+.+.|.|| |+
T Consensus 160 DVgLVG~PNaGKSTLl~~is~A~pkIa~Y---pFTT-------l~P~lGvv~~~-d~~~~~iaDiPGlIegA~~g~GLG~ 228 (334)
T PRK12299 160 DVGLVGLPNAGKSTLISSVSAAKPKIADY---PFTT-------LHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGH 228 (334)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCCCCCC---CCEE-------CCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCHH
T ss_conf 30146369874669999876476433578---7300-------38754799946-8867899866743355234777478
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-CCCCH---HHHHHH--HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 2467798774002331452012344-33210---677888--86318760233100233356122211012321001110
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAEDG-PKPQT---REHILL--ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~~G-~~~QT---~eh~~l--~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
+|++. +.-+...+.|||++.. +..+- ++.+.. -.++. ++.+|++||||+++.++..+..+ ++.+.
T Consensus 229 ~FLrH----ieR~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~-Kp~ivvlNK~Dl~~~~~~~~~~~----~~~~~ 299 (334)
T PRK12299 229 RFLKH----IERTRLLLHLVDASSEDPVEDYKTIRNELEKYSPELAD-KPRILVLNKIDLLDEEERKEKIK----ELIKA 299 (334)
T ss_pred HHHHH----HHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCHHHHHHHHH----HHHHH
T ss_conf 99876----65343699999799889899999999999985065536-98799998810688567899999----99987
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 14532210233114676411444565212332034431025
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
. +.+++++||.++. +++.|++.+.+.+
T Consensus 300 ~----~~~v~~ISA~~g~----------Gl~eL~~~i~~~L 326 (334)
T PRK12299 300 L----GGPVFLISAVTGE----------GLDELLRALWEFL 326 (334)
T ss_pred C----CCCEEEEECCCCC----------CHHHHHHHHHHHH
T ss_conf 0----9968999787784----------9999999999999
No 159
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.05 E-value=2.5e-09 Score=76.93 Aligned_cols=83 Identities=20% Similarity=0.319 Sum_probs=66.8
Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE-----------CCCHHHHCCCCEEEEEEEECCCEEE
Q ss_conf 30001689997105678755551159789999541477799996-----------1895570789769999997781775
Q gi|254780263|r 299 EYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIIL-----------SPGSQAVMPGDRVDLEVELIYPIAM 367 (392)
Q Consensus 299 ~~~~f~A~i~il~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~-----------~~~~~~i~~g~~~~v~l~l~~pi~~ 367 (392)
.+..|+|+++||+.. ++..|.++.+.+++..+.+++.. ......|..||++.|+|++.+|+++
T Consensus 2 ~s~~f~a~l~Wl~~~------pl~~g~~y~lk~~t~~~~~~I~~I~~~iDi~tl~~~~~~~l~~NdIa~v~i~~~~~i~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDEE------PLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred CCCEEEEEEEEECCC------CCCCCCEEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCEECCCCEEEEEEEECCCCCC
T ss_conf 243998999997398------68899999999877099999954489982264252443423799469999997996336
Q ss_pred CCC------CEEEEEE--CCEEEEEEEE
Q ss_conf 469------8499998--9969998999
Q gi|254780263|r 368 EPN------QTFSMRE--GGKTVGAGLI 387 (392)
Q Consensus 368 e~~------~rfilRd--~~~tig~G~I 387 (392)
++| ++|+|.| ++.|+|+|+|
T Consensus 76 D~y~~n~~~G~fILID~~tn~TvgaG~I 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred CHHHHCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 7056285861199998999968988729
No 160
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.05 E-value=1.9e-09 Score=77.61 Aligned_cols=115 Identities=21% Similarity=0.244 Sum_probs=76.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH--HH------
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787302--46------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD--YV------ 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~--f~------ 85 (392)
.++++|+.+-|||||+..||+..-+.+. +-.++ ..|.+|| |+.+..++-+|||||--| +-
T Consensus 170 TivVaG~PNVGKSSlv~~lT~AkpEvA~---YPFTT-------K~i~vGh--fe~~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAKPEVAP---YPFTT-------KGIHVGH--FERGYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC---CCCCC-------CCEEEEE--EECCCCEEEEECCCCCCCCCHHHHCHHH
T ss_conf 3898569987589999887548976678---88533-------6546765--5048705898428864578857736899
Q ss_pred HHHHHHHHC-CCCEEEEECCCC----CCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 779877400-233145201234----43321067788886318760233100233356122
Q gi|254780263|r 86 KNMITGATQ-ADGAILVCAAED----GPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 86 ~~mi~g~~~-~D~ailvVda~~----G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
++-+.++.. .++.|.++|+++ .++.|-.=--.+-..+. +++++++||+|.++.++
T Consensus 238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~ 297 (346)
T COG1084 238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEK 297 (346)
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCHHH
T ss_conf 9999999974285899976850028999999999999998538-87699974101246667
No 161
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.04 E-value=7e-10 Score=80.33 Aligned_cols=139 Identities=22% Similarity=0.218 Sum_probs=82.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199--08999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.++++|.-..|||||+.++... ...++-...+..+.....+..++ ..+.|.||||+++|-.-.-.
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~------------~f~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDG------------KFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPS 68 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 98999996996899999999709------------999984886664799999999999999999978982657788999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 74002331452012344332106778----888631---87602331002333561222110123210011101453221
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
-...+|++++|.|.++- ++-+++ ..++.. .+| ++++-||+|+.+..+ ...++..++.++. +.
T Consensus 69 ~~~~~d~~ilv~d~~~~---~Sf~~~~~~~~~i~~~~~~~~~-iilvgnK~DL~~~~~---v~~~~~~~~a~~~----~~ 137 (159)
T cd00154 69 YYRGAHGAILVYDITNR---ESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQ---VSTEEAQQFAKEN----GL 137 (159)
T ss_pred HHHHCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCHHCCC---CCHHHHHHHHHHC----CC
T ss_conf 97541275672448988---9999999999999986898882-699997456301168---9999999999986----99
Q ss_pred ECCCCEEEEEE
Q ss_conf 02331146764
Q gi|254780263|r 164 PIIRGSALCAL 174 (392)
Q Consensus 164 pii~~sa~~g~ 174 (392)
+++.+||.++.
T Consensus 138 ~~~e~SAk~~~ 148 (159)
T cd00154 138 LFFETSAKTGE 148 (159)
T ss_pred EEEEECCCCCC
T ss_conf 79998768881
No 162
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.03 E-value=8.2e-10 Score=79.92 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=82.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC-CEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9999046898878999999876444200131268686986292063789998219-908999847873024677987740
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD-KRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~-~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
|.++|--.+|||||+.++... .... .--|+......+..+ +..+++-|++|.+.|-.-.-.=..
T Consensus 2 ivilG~~~~GKTsil~r~~~~---------~~~~------~~pTig~~~~~~~~~~~~~l~iwD~~G~e~~~~~~~~y~~ 66 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHA---------ELVT------TIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLE 66 (160)
T ss_pred EEEECCCCCCHHHHHHHHHCC---------CCCC------CCCCCCEEEEEEEECCEEEEEEEECCCCCCCCHHHHHHHC
T ss_conf 999999999999999999569---------8777------5776150389999899899999978986247415887745
Q ss_pred CCCCEEEEECCCCCC-CCCHHHHHH-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCC--CCCEEEEEEEEEEEEECC
Q ss_conf 023314520123443-321067788-8863---187602331002333561222110123--210011101453221023
Q gi|254780263|r 94 QADGAILVCAAEDGP-KPQTREHIL-LARQ---IGISSIVVYMNKVDAVDDDELLDISEY--EIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 94 ~~D~ailvVda~~G~-~~QT~eh~~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~--~i~~~l~~~~~~~~~pii 166 (392)
.+|++|+|+|+++-. ..+.++.+. +++. .++| ++++.||+|+.+.-. .+++.. ++.++.+. .++++.
T Consensus 67 ~a~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~p-ili~~NK~Dl~~~~~-~~ei~~~l~~~~~~~~----~~~~i~ 140 (160)
T cd04156 67 NTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AEEITRRFKLKKYCSD----RDWYVQ 140 (160)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCCC-HHHHHHHHHHHHHHHC----CCCEEE
T ss_conf 6778999985686788787999999998663537874-999998633656679-9999999869999853----999999
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780263|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
++||.+|-
T Consensus 141 ~~SAktGe 148 (160)
T cd04156 141 PCSAVTGE 148 (160)
T ss_pred EEECCCCC
T ss_conf 86688495
No 163
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=99.01 E-value=1.9e-09 Score=77.68 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 388279999904689887899999987644420013126868698629206--378999821990899984787302467
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
++| .|.++|=-+||||||.-+|...... .+ --|| +.++.+...++..++++|.|||..+-.
T Consensus 2 ~~p--tvLllGl~~sGKT~Lf~~L~~~~~~------~T---------~tS~~~n~~~~~~~~~~~~~~lvD~PGh~klR~ 64 (181)
T pfam09439 2 SQP--AVIIAGLCDSGKTSLFTLLTTGSVR------KT---------VTSQEPSAAYKYMNNKGNSLTLIDFPGHVKLRY 64 (181)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHCCCCC------CE---------ECCCCCCCEEEEECCCCCEEEEEECCCCHHHHH
T ss_conf 988--6999868999899999999759948------75---------888678640687516896689998899689999
Q ss_pred HHHH---HHHCCCCEEEEECCCC--CCCCCHHHHHHH-HH---H--CCCCCEEEEECCCCCCCC
Q ss_conf 7987---7400233145201234--433210677888-86---3--187602331002333561
Q gi|254780263|r 87 NMIT---GATQADGAILVCAAED--GPKPQTREHILL-AR---Q--IGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 87 ~mi~---g~~~~D~ailvVda~~--G~~~QT~eh~~l-~~---~--lgi~~iIv~iNKmD~v~~ 139 (392)
.+.. ..+.+.+.|.|||+.. .-...+.|.+.- +. . -++| +.|+.||+|+...
T Consensus 65 ~~~~~~~~~~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vP-vLI~cNKqDl~~A 127 (181)
T pfam09439 65 KLLETLKDSSSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGID-ILIACNKQEIFTA 127 (181)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCC-EEEEEECCCCCCC
T ss_conf 99986430026449999997866566799999999999844543368997-8999737463357
No 164
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.99 E-value=1.4e-09 Score=78.47 Aligned_cols=142 Identities=18% Similarity=0.147 Sum_probs=85.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE--EEEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378--9998219908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA--HVSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.+++.. ...++-..-+..+.. ...+......+.|.|+||+++|-...-.
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~------------~f~~~~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD------------TFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 98999997995799999999639------------999984873133423899999999999999999998423534224
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-HHHHHC----CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 74002331452012344332106778-888631----8760233100233356122211012321001110145322102
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-LLARQI----GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-~l~~~l----gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
-...+|+++||.|.+.-..=+..+++ ..++.. .+| ++++-||.|+-+.+ ...++.+++.++. +.++
T Consensus 69 ~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~-~ilVgnK~D~~~~~----v~~~~~~~~a~~~----~~~y 139 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENRE----VTREEGLKFARKH----NMLF 139 (161)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCCCC----CCHHHHHHHHHHC----CCEE
T ss_conf 4132153489976782656999999999999856888873-78873104400068----9999999999986----9999
Q ss_pred CCCEEEEEEE
Q ss_conf 3311467641
Q gi|254780263|r 166 IRGSALCALQ 175 (392)
Q Consensus 166 i~~sa~~g~~ 175 (392)
+.+||.+|.+
T Consensus 140 ~e~Sak~g~n 149 (161)
T cd01863 140 IETSAKTRDG 149 (161)
T ss_pred EEECCCCCCC
T ss_conf 9971586815
No 165
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=98.98 E-value=2e-09 Score=77.57 Aligned_cols=138 Identities=16% Similarity=0.258 Sum_probs=84.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC-----CH------
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787-----30------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG-----HA------ 82 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG-----H~------ 82 (392)
-|+.+|-..+|||||+.+++....+.+. +..++ .+=+++...+. +.+.+.+.|.|| |+
T Consensus 161 DVGLvG~PNAGKSTll~~iS~AkPKIAd---YpFTT-------L~PnLGvV~~~-~~~~fviADIPGLIeGAs~G~GLG~ 229 (380)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVAD---YPFTT-------LVPNLGVVRVD-DERSFVIADIPGLIEGAAEGAGLGI 229 (380)
T ss_pred CCCEEECCCCCCHHHHHHHHCCCCCCCC---CCCCC-------CCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCHHH
T ss_conf 6514636988610899885558975478---87533-------68746799946-9866999877755577555877289
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCC--CCCCCHHHHHHH--------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE
Q ss_conf 246779877400233145201234--433210677888--------8631876023310023335612221101232100
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAED--GPKPQTREHILL--------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRD 152 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~~--G~~~QT~eh~~l--------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~ 152 (392)
+|++.+.| +..-+.|||+.. +-.|.- ....| -.++.-|+ ||++||||+.+.+++.+. +++
T Consensus 230 ~FLrHieR----t~~LlhviD~s~~~~~dp~~-~~~~i~~EL~~Y~~~L~~kp~-iiv~NK~Dl~~~~e~~~~----~~~ 299 (380)
T PRK12298 230 RFLKHLER----CRVLLHLIDIAPIDGSDPVE-NARIIVNELEKYSPKLAEKPR-WLVFNKIDLLDEEEAEER----AKE 299 (380)
T ss_pred HHHHHHHH----HCEEEEEEECCCCCCCCHHH-HHHHHHHHHHHHCHHHCCCCE-EEEEECCCCCCHHHHHHH----HHH
T ss_conf 99999875----35899999688777519999-999999999985976605987-999988548997999999----999
Q ss_pred EEEEEEEEEEEECCCCEEEEEE
Q ss_conf 1110145322102331146764
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g~ 174 (392)
+++..++. .|++++||+++.
T Consensus 300 ~~~~~~~~--~~v~~ISA~tge 319 (380)
T PRK12298 300 IVEALGWE--GPVYLISAASGE 319 (380)
T ss_pred HHHHCCCC--CCEEEEECCCCC
T ss_conf 99970888--887999787687
No 166
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.98 E-value=1.8e-09 Score=77.75 Aligned_cols=140 Identities=24% Similarity=0.261 Sum_probs=85.9
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|.++|=-+||||||+-+|.... . ..--=|+-.....+++++..+++-|.+|+..|-+---.=...
T Consensus 2 ililGLd~aGKTTil~~l~~~~---------~------~~~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~ 66 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGEI---------P------KKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAE 66 (167)
T ss_pred EEEEEECCCCHHHHHHHHCCCC---------C------CCCCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 8999008998899999982899---------8------765087773179999899999999899877888999987347
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCC---HHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 233145201234-4332106778888----63187602331002333561---222110123210011101453221023
Q gi|254780263|r 95 ADGAILVCAAED-GPKPQTREHILLA----RQIGISSIVVYMNKVDAVDD---DELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~---~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
+|+.|+|||+++ .-+.+.++.+.-+ ...++| +.|+.||.|+.+. ++..+.. .+.++.... ...+.+.
T Consensus 67 ~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~P-iLIlaNKqDl~~a~~~~ei~~~L--~L~~l~~~~--~~~~~I~ 141 (167)
T cd04161 67 AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGADVIEYL--SLEKLVNEN--KSLCHIE 141 (167)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCE-EEEEEECCCCCCCCCHHHHHHHH--CCHHHCCCC--CCEEEEE
T ss_conf 765799985575889999999999996588778995-99998865761589999999881--974240899--8637999
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780263|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
++||++|.
T Consensus 142 ~csA~tG~ 149 (167)
T cd04161 142 PCSAIEGL 149 (167)
T ss_pred ECEEECCC
T ss_conf 57644488
No 167
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=98.98 E-value=4.6e-09 Score=75.27 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=74.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCC-----CH----
Q ss_conf 999990468988789999998764442001312686869862920637899982199--0899984787-----30----
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPG-----HA---- 82 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PG-----H~---- 82 (392)
-|+.+|=..||||||+.+++....|.+. +..++ +.=+++...++... +.|.|.|-|| |+
T Consensus 160 DVGLvGfPNAGKSTLLs~~S~AkPKiAd---YPFTT-------L~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GL 229 (296)
T TIGR02729 160 DVGLVGFPNAGKSTLLSAISNAKPKIAD---YPFTT-------LEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGL 229 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEECC---CCCCC-------CCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCC
T ss_conf 0210357887468888887627882238---78745-------6531128987487416889998568615666268875
Q ss_pred --HHHHHHHHHHHCCCCEEEEECCCCC-----CCCCHHHHHH-HHHH-------CCCCCEEEEECCCCCC
Q ss_conf --2467798774002331452012344-----3321067788-8863-------1876023310023335
Q gi|254780263|r 83 --DYVKNMITGATQADGAILVCAAEDG-----PKPQTREHIL-LARQ-------IGISSIVVYMNKVDAV 137 (392)
Q Consensus 83 --~f~~~mi~g~~~~D~ailvVda~~G-----~~~QT~eh~~-l~~~-------lgi~~iIv~iNKmD~v 137 (392)
+|+|...| +-.-+.|||++.- ...--.+.+. |.+. |--++-||++||||+.
T Consensus 230 G~~FLKHIER----t~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~ 295 (296)
T TIGR02729 230 GHKFLKHIER----TRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLL 295 (296)
T ss_pred CHHHHHHHHH----EEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCC
T ss_conf 3355457520----26688798068753424289888999999999997508736278079998606778
No 168
>pfam03144 GTP_EFTU_D2 Elongation factor Tu domain 2. Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to pfam03143, and in fact has weak sequence matches to this domain.
Probab=98.97 E-value=4e-10 Score=81.82 Aligned_cols=70 Identities=40% Similarity=0.639 Sum_probs=62.6
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEE
Q ss_conf 54301487424534896799950687432125412100121144321001366641124543220211773
Q gi|254780263|r 222 GTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVC 292 (392)
Q Consensus 222 G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~ 292 (392)
|++++|||+||+|++||++.++|. +.....+|++|++++...+++.+|+.+++.+.+.+..|+++||+|+
T Consensus 1 G~v~~grv~~G~lk~gd~v~~~~~-~~~~~~kV~~l~~~~~~~~~~~~g~~~g~iv~~~~~~~i~~Gdti~ 70 (70)
T pfam03144 1 GTVATGRVESGTLKKGDKVVIGPN-GTGKKGRVTSLEMFHGDLREAVAGANAGIILAGIGLKDIKRGDTLT 70 (70)
T ss_pred CEEEEEEEEECEEECCCEEEEECC-CCCCCEEEEEEEEECCCHHHHHCCCCCEEEEEECCCCCCCCCCEEC
T ss_conf 959999998098965999999369-9622137718999775512211511000378746704572467949
No 169
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.97 E-value=3.4e-09 Score=76.07 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=89.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|+..+|.++|==.|||||++.+|... .... ---|+......+.+++..+++-|..|+..|-.-=-
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~~---------~~~~------~~PT~g~~~e~~~~~~~~~~~wDlgG~~~~R~lW~ 79 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND---------RLAQ------HQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWK 79 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC---------CCCC------CCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 66147999965889889999998069---------9753------05787886489999999999998898777889999
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHHHHHH----HHCCCCCEEEEECCCCCCC---CHHHHHHCCCCCCEEEEEEEE--
Q ss_conf 774002331452012344-332106778888----6318760233100233356---122211012321001110145--
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREHILLA----RQIGISSIVVYMNKVDAVD---DDELLDISEYEIRDLLKEHKY-- 159 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~---~~~~~~~i~~~i~~~l~~~~~-- 159 (392)
.=...+|+.|+|||+++- -+.+.++.+.-+ ...++| +.|+.||.|+.+ .++..+.. .+.++......
T Consensus 80 ~Yy~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~P-lLilaNKqDl~~a~~~~ei~~~L--~L~~~~~~~~~~~ 156 (184)
T smart00178 80 DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAASEDELRYAL--GLTNTTGSKGKVG 156 (184)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHH--CCHHHHCCCCCCC
T ss_conf 88216758999972686889999999999986467655970-99999756777899999999881--9512326557667
Q ss_pred EEEEECCCCEEEEE
Q ss_conf 32210233114676
Q gi|254780263|r 160 SDDTPIIRGSALCA 173 (392)
Q Consensus 160 ~~~~pii~~sa~~g 173 (392)
...+.+.++||++|
T Consensus 157 ~r~~~i~~~SA~tG 170 (184)
T smart00178 157 VRPLEVFMCSVVRR 170 (184)
T ss_pred CCCEEEEEEECCCC
T ss_conf 76319997356079
No 170
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=98.96 E-value=2.5e-09 Score=76.88 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=82.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC-----C------
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787-----3------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG-----H------ 81 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG-----H------ 81 (392)
-.++.+|-..+|||||+.+|+....+.+.. ..++ ++=+++.. +.++.+|++.|.|| |
T Consensus 160 ADVGLvG~PNaGKSTLl~~iS~AkpkIA~Y---pFTT-------L~PnLGvv--~~~d~~f~iADiPGLIeGAs~g~GLG 227 (495)
T PRK12296 160 ADVGLVGFPSAGKSSLISAISAAKPKIADY---PFTT-------LVPNLGVV--SAGDHTFTVADVPGLIPGASEGRGLG 227 (495)
T ss_pred ECCCEECCCCCCHHHHHHHHHCCCCCCCCC---CCCC-------CCCEEEEE--ECCCCEEEEEECCCCCCCCCCCCCCH
T ss_conf 131101189996158998875488765787---7554-------57546789--70795289985664346500389843
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC---CCCCC----HHHHHHHHH------------HCCCCCEEEEECCCCCCCCHHH
Q ss_conf 0246779877400233145201234---43321----067788886------------3187602331002333561222
Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAED---GPKPQ----TREHILLAR------------QIGISSIVVYMNKVDAVDDDEL 142 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~---G~~~Q----T~eh~~l~~------------~lgi~~iIv~iNKmD~v~~~~~ 142 (392)
-+|++.+.| +-+-+.|||+.. |-.|- +.+.=.-++ ++.-| -||++||||+.+.++.
T Consensus 228 ~~FLRHieR----~~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erp-qIVvlNKiDlp~a~e~ 302 (495)
T PRK12296 228 LDFLRHIER----CAVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERP-RLVVLNKIDVPDAREL 302 (495)
T ss_pred HHHHHHHHH----CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-EEEEEECCCCCCHHHH
T ss_conf 999998752----54799999688766678969999999999997191430443323210196-5999966567576999
Q ss_pred HHHCCCCCCEEEEEEEEEEEEECCCCEEEEE
Q ss_conf 1101232100111014532210233114676
Q gi|254780263|r 143 LDISEYEIRDLLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 143 ~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g 173 (392)
.+.++. .|++. ..|++++||+++
T Consensus 303 ~e~~~~----~l~~~----g~~Vf~ISA~t~ 325 (495)
T PRK12296 303 AEFVRP----ELEER----GWPVFEVSTVTR 325 (495)
T ss_pred HHHHHH----HHHHC----CCCEEEEECCCC
T ss_conf 999999----99874----995799864100
No 171
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.96 E-value=2e-09 Score=77.51 Aligned_cols=144 Identities=17% Similarity=0.142 Sum_probs=79.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE--EE---ECCCEEEEEEECCCCHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899--98---21990899984787302467
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV--SY---ETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~---~~~~~~i~iiD~PGH~~f~~ 86 (392)
.++|+++|--.+|||||+.++.... ..+. --|+-..+. .+ ..+...+.|-||+|++.|-.
T Consensus 3 ~~kIvilG~~~~GKTsil~r~~~~~--------f~~~-------~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNE--------FVNT-------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC--------CCCC-------CCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCCE
T ss_conf 7999999999998899999996498--------6776-------870355789999961678667999997898734510
Q ss_pred HHHHHHHCCCCEEEEECCCCC-CCCCHHHHHH-HH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 798774002331452012344-3321067788-88---631876023310023335612221101232100111014532
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDG-PKPQTREHIL-LA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~-l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
-.-.=...+|++|+|+|+++- -+.+.++.+. +. ...++| ++++-||.|+.+.-. .++++..+. +.+.....
T Consensus 68 l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~p-iliv~NK~Dl~~~~~-~~ei~~~l~--l~~~~~~~ 143 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-VSEVEKLLA--LHELSAST 143 (183)
T ss_pred EHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCE-EEEEEECCCCCCCCC-HHHHHHHHH--HHHHHCCC
T ss_conf 08767467867899996776889999999999997321237962-999986677766878-899999971--99986669
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
.+.+.++||.+|-
T Consensus 144 ~~~i~~tSA~tG~ 156 (183)
T cd04152 144 PWHVQPACAIIGE 156 (183)
T ss_pred CCEEEEEECCCCC
T ss_conf 9899972799796
No 172
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.96 E-value=2.8e-09 Score=76.63 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=86.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE--EEEECC--CEEEEEEECCCCHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789--998219--9089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH--VSYETD--KRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~--~~~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|.-..|||+|+.++... ...++.. -||...+ ..+..+ ..++.|.||+|++.|-.-.
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~------------~f~~~~~--~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKN------------EFSENQE--STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCC--CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 79999995996899999999439------------8999868--866678899999999999999999799971002788
Q ss_pred HHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433-2106778888631---876023310023335612221101232100111014532210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
-.-...+|+++||.|.+.-.. ...+.-+.-++.. .++ ++++-||+|+.+..+ ...++.+++.++. +.+
T Consensus 68 ~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~-iilVgnK~DL~~~r~---V~~~e~~~~a~~~----~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQ---VSTEEAQEYADEN----GLL 139 (163)
T ss_pred HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf 98851677149998189979999999999999985598723-677553357565089---9999999999982----997
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 233114676411444565212332034431025
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
++.+||.+|. ++..+++.|...+
T Consensus 140 ~~E~SAk~~~----------nV~e~F~~l~~~i 162 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKL 162 (163)
T ss_pred EEEECCCCCC----------CHHHHHHHHHHHC
T ss_conf 9998626590----------7899999999858
No 173
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.3e-09 Score=73.38 Aligned_cols=113 Identities=19% Similarity=0.322 Sum_probs=92.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
-|.+-+|++|-...|||||+..|.+.+.+.-. .|..--||+- ..+.++|||+.|| +=+-.||
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti---------~~i~GPiTvv------sgK~RRiTflEcp---~Dl~~mi 128 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI---------DEIRGPITVV------SGKTRRITFLECP---SDLHQMI 128 (1077)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH---------HCCCCCEEEE------ECCEEEEEEEECH---HHHHHHH
T ss_conf 99758996369988746899999999877542---------0367864786------1563578988671---7888887
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 774002331452012344332106778888631876023310023335612
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
.-+..||.+||+||+.-|.+-.|.|.+.++...|.|.+..+++..|+-..+
T Consensus 129 DvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 129 DVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred HHHHHHHEEEEEECCCCCCEEHHHHHHHHHHHCCCCCEEEEEEECCCCCCH
T ss_conf 688752135788636667042488999998664897247888621133583
No 174
>KOG1191 consensus
Probab=98.95 E-value=4.7e-09 Score=75.21 Aligned_cols=121 Identities=19% Similarity=0.222 Sum_probs=85.3
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH---
Q ss_conf 03882799999046898878999999876444200131268686986292063789998219908999847873024---
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY--- 84 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f--- 84 (392)
.-|.-++||++|-.+.|||||+.+|++.-.... --+-|-|.|+--+.|+.+++.+.++||.|-+.=
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIV-----------Spv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~ 332 (531)
T KOG1191 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIV-----------SPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND 332 (531)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEE-----------CCCCCCCHHHHEEEEECCCEEEEEEECCCCCCCCCC
T ss_conf 763577289976998778899988750774476-----------789996410012276308758999734131002687
Q ss_pred HHHHH------HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC-----------CCEEEEECCCCCCCC
Q ss_conf 67798------77400233145201234433210677888863187-----------602331002333561
Q gi|254780263|r 85 VKNMI------TGATQADGAILVCAAEDGPKPQTREHILLARQIGI-----------SSIVVYMNKVDAVDD 139 (392)
Q Consensus 85 ~~~mi------~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi-----------~~iIv~iNKmD~v~~ 139 (392)
..+++ ..+-++|..++||||.++.+.+--....++...+. .++|.++||.|++.+
T Consensus 333 ~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191 333 GIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCC
T ss_conf 067776899998876547799996330033325328999988742555897044434623788610221576
No 175
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.95 E-value=2.4e-09 Score=77.05 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=85.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|.++|--.+||||++.+|....- .+. --|+-.....+++++..+++-|++|++.|-.-.-.=...
T Consensus 2 IlilGl~~sGKTtil~~l~~~~~--------~~~-------~pT~G~~~~~i~~~~~~l~iwD~gG~~~~r~~w~~Yy~~ 66 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDEF--------MQP-------IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLN 66 (169)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC--------CCC-------CCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHCCC
T ss_conf 99999899988999999957996--------897-------786881669999898899999899972446367875557
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCHHHHHHCCC--CCCEEEEEEEEEEEEECCC
Q ss_conf 233145201234-433210677888----863187602331002333561222110123--2100111014532210233
Q gi|254780263|r 95 ADGAILVCAAED-GPKPQTREHILL----ARQIGISSIVVYMNKVDAVDDDELLDISEY--EIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~--~i~~~l~~~~~~~~~pii~ 167 (392)
+|++++|||+++ .-+...++.+.- ....++| ++++.||.|+.+.-. .+++.+ .+.++. -...+.+.+
T Consensus 67 ~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~p-iLIlaNK~Dl~~~~~-~~ei~~~l~l~~~~----~~~~~~i~~ 140 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-VEEMTELLSLHKLC----CGRSWYIQG 140 (169)
T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCE-EEEEEECCCCCCCCC-HHHHHHHHCCHHHC----CCCCEEEEE
T ss_conf 627999998630677999999999997127537984-999973556777989-99999985705452----699629995
Q ss_pred CEEEEEE
Q ss_conf 1146764
Q gi|254780263|r 168 GSALCAL 174 (392)
Q Consensus 168 ~sa~~g~ 174 (392)
+||.+|.
T Consensus 141 ~SA~tG~ 147 (169)
T cd04158 141 CDARSGM 147 (169)
T ss_pred EECCCCC
T ss_conf 5572795
No 176
>KOG1423 consensus
Probab=98.95 E-value=3.5e-09 Score=75.98 Aligned_cols=117 Identities=24% Similarity=0.290 Sum_probs=75.8
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC------CH
Q ss_conf 388279999904689887899999987644420013126868698629206378999821990899984787------30
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG------HA 82 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG------H~ 82 (392)
.+.-+++|+||-.++|||||+..+.+. +..-...+++++.++ ...-+..+...+-|.|||| |+
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~--kv~~vS~K~~TTr~~---------ilgi~ts~eTQlvf~DTPGlvs~~~~r 137 (379)
T KOG1423 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQ--KVSAVSRKVHTTRHR---------ILGIITSGETQLVFYDTPGLVSKKMHR 137 (379)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHCC--CCCCCCCCCCCEEEE---------EEEEEECCCEEEEEECCCCCCCCCHHH
T ss_conf 115789999708976545544576487--212011566530201---------357871596589996487645334135
Q ss_pred H------HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH----HHHCCCCCEEEEECCCCCCCCH
Q ss_conf 2------46779877400233145201234433210677888----8631876023310023335612
Q gi|254780263|r 83 D------YVKNMITGATQADGAILVCAAEDGPKPQTREHILL----ARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 83 ~------f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l----~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
. |+-+--+++-.||..++|+||.. +-+.-|-.+ -....+|.+ .++||+|.....
T Consensus 138 ~~~l~~s~lq~~~~a~q~AD~vvVv~Das~---tr~~l~p~vl~~l~~ys~ips~-lvmnkid~~k~k 201 (379)
T KOG1423 138 RHHLMMSVLQNPRDAAQNADCVVVVVDASA---TRTPLHPRVLHMLEEYSKIPSI-LVMNKIDKLKQK 201 (379)
T ss_pred HHHHHHHHHHCHHHHHHHCCEEEEEEECCC---CCCCCCHHHHHHHHHHHCCCCE-EECCCHHCCHHH
T ss_conf 678888765378988863887999985567---7675680787778998618720-330400022146
No 177
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.94 E-value=4.7e-09 Score=75.19 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=75.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEE--ECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998--2199089998478730246779877
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSY--ETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
.|.++|=-+||||||.-.|...... .. .. -++-+.++... ...++.++++|+|||..+-..+..-
T Consensus 2 tvLl~Gl~~aGKT~Lf~~L~~~~~~--~T---~t--------S~~~n~~~~~~~~~~~~~~~~lvD~PGH~klR~~~~~~ 68 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR--ST---VT--------SIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLET 68 (203)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC--CC---CC--------CCCCCCEEEECCCCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 5999907999899999999749988--87---78--------88786206640246687279999879968899999999
Q ss_pred HH-CCCCEEEEECCCCC--CCCCHHHHHHH-H---HH--CCCCCEEEEECCCCCCCC---HHHHHHCCCCCCEE
Q ss_conf 40-02331452012344--33210677888-8---63--187602331002333561---22211012321001
Q gi|254780263|r 92 AT-QADGAILVCAAEDG--PKPQTREHILL-A---RQ--IGISSIVVYMNKVDAVDD---DELLDISEYEIRDL 153 (392)
Q Consensus 92 ~~-~~D~ailvVda~~G--~~~QT~eh~~l-~---~~--lgi~~iIv~iNKmD~v~~---~~~~~~i~~~i~~~ 153 (392)
.. .+++.++||||.+= -...+.|.|.- + .. -++| +.|+.||+|+... +...+..+.|+..+
T Consensus 69 ~~~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iP-vLIacNKqDl~tA~~~~~Ik~~LE~Ei~~l 141 (203)
T cd04105 69 LKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFTAKPAKKIKEQLEKELNTL 141 (203)
T ss_pred HHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8754989999996887511199999999999862664368998-899986614345789999999999999999
No 178
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.94 E-value=4.7e-10 Score=81.43 Aligned_cols=83 Identities=31% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEC
Q ss_conf 10000000135544543014874245348967999506874321254121001211443210013666411245432202
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPR 287 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~r 287 (392)
++++|.++|.+++.|++++|||.+|++++|+.+.+.|. ......++.+|+.++.+++++.||+.+++.+... .++++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~-~~~~~~~v~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~~ 77 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPG-GGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIKI 77 (83)
T ss_pred CEEEEEEEEEECCCEEEEEEEECCCEEECCCEEEEECC-CCCEEEEEEEEEEECCCCCEECCCCEEEEEECCH--HHCCC
T ss_conf 91299999991896899999993429989999999709-9638999989999223777984898999997163--53479
Q ss_pred HHEEEC
Q ss_conf 117732
Q gi|254780263|r 288 GRVVCA 293 (392)
Q Consensus 288 Gdvl~~ 293 (392)
||+++.
T Consensus 78 gd~~~~ 83 (83)
T cd01342 78 GDTLTD 83 (83)
T ss_pred CCEECC
T ss_conf 989829
No 179
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.94 E-value=1.1e-09 Score=79.06 Aligned_cols=142 Identities=22% Similarity=0.156 Sum_probs=82.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHC--CCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862--920637899982199089998478730246779877
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLR--GITIATAHVSYETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~r--GiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
.|+++|.-..|||+|+.++.... ..++... |.+........+.....+.|.|+||+++|-.-.-.-
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~------------f~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~~~~~~~~~~ 69 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENK------------FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIY 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHH
T ss_conf 89999999967999999998398------------998767752647999999999999999999589973035563133
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHH--HHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 4002331452012344332106778--88863--1876023310023335612221101232100111014532210233
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHI--LLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~--~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
...+|+.+||.|.+.-..-+.-+.+ .+.+. -.+| +|++-||.|+.+..+ ...++..++.++. +.+++.
T Consensus 70 ~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~-iilvgnK~Dl~~~r~---v~~~e~~~~a~~~----~~~y~e 141 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV---VSKSEAEEYAKSV----GAKHFE 141 (162)
T ss_pred EECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCCHHHCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf 01144579996389989999999999999987699974-686633213254088---8999999999982----998999
Q ss_pred CEEEEEEE
Q ss_conf 11467641
Q gi|254780263|r 168 GSALCALQ 175 (392)
Q Consensus 168 ~sa~~g~~ 175 (392)
+||.+|.+
T Consensus 142 ~Sak~g~n 149 (162)
T cd04123 142 TSAKTGKG 149 (162)
T ss_pred EECCCCCC
T ss_conf 81278819
No 180
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.93 E-value=2.6e-09 Score=76.78 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=81.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.++++|.-..|||+|+.++... ..+++-..-+.++.....+.. ....+.|.||||+++|-.-.-.
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~------------~f~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~~~l~~~ 68 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG------------KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSS 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 98999998997799999999419------------999986884566667799999999999999967994466477998
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 7400233145201234433-2106778888631---87602331002333561222110123210011101453221023
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
-...+|+++||.|.++-.. ....+-+..++.. ++| ++++-||+|+.+..+ ...++..++.++. +.+++
T Consensus 69 ~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~p-iilvgnK~Dl~~~r~---V~~~e~~~~a~~~----~~~~~ 140 (164)
T smart00175 69 YYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ---VSREEAEAFAEEH----GLPFF 140 (164)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCCHHHHCC---CCHHHHHHHHHHC----CCEEE
T ss_conf 833665368843689989999999999999986799982-551164568565187---9999999999984----99799
Q ss_pred CCEEEEEE
Q ss_conf 31146764
Q gi|254780263|r 167 RGSALCAL 174 (392)
Q Consensus 167 ~~sa~~g~ 174 (392)
.+||.+|.
T Consensus 141 e~SAk~~~ 148 (164)
T smart00175 141 ETSAKTNT 148 (164)
T ss_pred EECCCCCC
T ss_conf 98316690
No 181
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=98.91 E-value=7e-09 Score=74.15 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=80.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC-----C------H
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787-----3------0
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG-----H------A 82 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG-----H------~ 82 (392)
.|+++|-..+|||||+.+|+....+.+.. ..++ ++=+++...+. +.+.+.+.|.|| | -
T Consensus 160 DVGLvG~PNaGKSTll~~is~A~pkIa~Y---pFTT-------l~P~lGvv~~~-~~~~~~iADiPGLIeGA~~g~GLG~ 228 (429)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANY---HFTT-------LVPNLGVVETD-DGRSFVMADLPGLIEGASEGVGLGH 228 (429)
T ss_pred CCCEEECCCCCHHHHHHHHHCCCCCCCCC---CCCC-------CCCEEEEEEEC-CCCEEEEEECCCCCCCCCCCCCCCH
T ss_conf 76336479984578998875489755787---7402-------57666689856-9866999626745677446888668
Q ss_pred HHHHHHHHHHHCCCCEEEEECCC--CCCCCC----HHH-HHH--HHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE
Q ss_conf 24677987740023314520123--443321----067-788--886318760233100233356122211012321001
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAE--DGPKPQ----TRE-HIL--LARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL 153 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~--~G~~~Q----T~e-h~~--l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~ 153 (392)
+|++.+.| +..-+.|||++ ++-.|. +.+ -+. -..++.-| -||++||||+.+.++.++..++ .
T Consensus 229 ~FLrHieR----~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp-~ivv~NK~Dl~~~~~~~~~~~~----~ 299 (429)
T PRK12297 229 QFLRHIER----TRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERP-QIIVANKMDLPEAEENLEEFKE----K 299 (429)
T ss_pred HHHHHHHH----CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCC-EEEEEECCCCCCHHHHHHHHHH----H
T ss_conf 88887662----4679999978787777989999999999998689872696-6999976458576999999999----7
Q ss_pred EEEEEEEEEEECCCCEEEEE
Q ss_conf 11014532210233114676
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g 173 (392)
+.. ..+++++||+++
T Consensus 300 ~~~-----~~~i~~iSa~t~ 314 (429)
T PRK12297 300 LAK-----GKKVFPISALTK 314 (429)
T ss_pred HHC-----CCCEEEEECCCC
T ss_conf 534-----697899968445
No 182
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.90 E-value=2.6e-09 Score=76.83 Aligned_cols=141 Identities=19% Similarity=0.197 Sum_probs=81.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-..-+-.+.....+..+ ...+.|.||+|+++|-.-.-.
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNK------------KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVA 68 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 98999998997899999999529------------889875775551699999999999999999969998311068899
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHHC------CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 740023314520123443321067788-----88631------8760233100233356122211012321001110145
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHIL-----LARQI------GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~l------gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
-...+|+++||.|.+. ++|-+.+. +.... .+| +|++-||+|+.+..+ ...++.+++.+..+
T Consensus 69 ~~~~a~~~ilvydvt~---~~Sf~~l~~w~~~~~~~~~~~~~~~~p-iilvgNK~Dl~~~r~---V~~~e~~~~a~~~~- 140 (172)
T cd01862 69 FYRGADCCVLVYDVTN---PKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQ---VSTKKAQQWCQSNG- 140 (172)
T ss_pred HHHHCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCHHHCCC---CCHHHHHHHHHHCC-
T ss_conf 8652757999933899---899999999999999972767765763-899963368364189---99999999999769-
Q ss_pred EEEEECCCCEEEEEEE
Q ss_conf 3221023311467641
Q gi|254780263|r 160 SDDTPIIRGSALCALQ 175 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~ 175 (392)
..+++.+||.++.+
T Consensus 141 --~~~~~E~SAk~~~n 154 (172)
T cd01862 141 --NIPYFETSAKEAIN 154 (172)
T ss_pred --CCEEEEECCCCCCC
T ss_conf --97899975267919
No 183
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.90 E-value=5.4e-09 Score=74.81 Aligned_cols=157 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467798774
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
+.|+++|.-..|||+|+-++....=.+ .....-+ -.|+. ..+..+...++|.||+|.++|-.-.-.-.
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~F~~-----~~~~t~~----~~~~~---~~~~~~~v~l~i~DtaG~e~~~~~~~~~~ 68 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE-----NVPRVLP----EITIP---ADVTPERVPTTIVDTSSRPQDRANLAAEI 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCC-----CCCCCCC----CEEEE---EEECCEEEEEEEEECCCCCCCCHHHHHHH
T ss_conf 989999999989999999998497888-----7776345----68999---99889099999998998723024579873
Q ss_pred HCCCCEEEEECCCCCCC-CCHHHH-HHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 00233145201234433-210677-888863--18760233100233356122211012321001110145322102331
Q gi|254780263|r 93 TQADGAILVCAAEDGPK-PQTREH-ILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~-~QT~eh-~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
..+|+++||-|.+.-.. ..-.+. +..++. -.+| +|++-||+|+.+..+... .+.+...+..+. ..-.+++.+
T Consensus 69 ~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~p-iilvGNK~DL~~~r~~~~-~e~~~~~~~~~~--~~~~~~~Et 144 (166)
T cd01893 69 RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQAG-LEEEMLPIMNEF--REIETCVEC 144 (166)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCH-HHHHHHHHHHHH--CCCCEEEEE
T ss_conf 6898899997089877899999999999998689996-899998865400250335-889999999973--074889990
Q ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 146764114445652123320344310
Q gi|254780263|r 169 SALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 169 sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
||.+|.+ +..+++++..
T Consensus 145 SAktg~n----------V~e~F~~~~k 161 (166)
T cd01893 145 SAKTLIN----------VSEVFYYAQK 161 (166)
T ss_pred CCCCCCC----------HHHHHHHHHH
T ss_conf 6588919----------8999999999
No 184
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.89 E-value=4.1e-09 Score=75.60 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=81.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199--08999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|-...|||+|+.++....- .+ +-..-+..+.....+..++ .+++|.|++|+.+|-.-.-.
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f--------~~----~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~~~~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF--------VS----KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--------CC----CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 9899999599568999999963999--------99----85897655777999999999999999989997647899999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH--HHHHH------CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 74002331452012344332106778--88863------18760233100233356122211012321001110145322
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI--LLARQ------IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~------lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
-.+.+|++|||.|+++-..=+..+.+ .+.+. ..-.+++++-||+|+.+.... ..++..++.+.. +
T Consensus 69 ~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v---~~~~~~~~a~~~----~ 141 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV---SEDEGRLWAESK----G 141 (168)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCC---CHHHHHHHHHHC----C
T ss_conf 987477889995089744489999999999998245345668629998540344425788---999999999986----9
Q ss_pred EECCCCEEEEEEE
Q ss_conf 1023311467641
Q gi|254780263|r 163 TPIIRGSALCALQ 175 (392)
Q Consensus 163 ~pii~~sa~~g~~ 175 (392)
.+++.+||.+|.+
T Consensus 142 ~~~~E~Sak~g~~ 154 (168)
T cd04119 142 FKYFETSACTGEG 154 (168)
T ss_pred CEEEEECCCCCCC
T ss_conf 9899988577908
No 185
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.88 E-value=5.3e-09 Score=74.87 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=82.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821--9908999847873024677
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~ 87 (392)
.+-+.|+++|.-..|||+|+.++... ..+++-..-+..+.....++. ..+.+.|.||||+++|-.-
T Consensus 3 ~~~~KivvlGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~l 70 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTN------------KFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSL 70 (170)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCC
T ss_conf 60899999999997899999999739------------899988887607989999999999999999989997243524
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHH------CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 987740023314520123443321067788-----8863------18760233100233356122211012321001110
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHIL-----LARQ------IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~------lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
.-.-...+|++|||.|.+.- +|-+.+. +.+. -.+| +|++-||+|+-+.+ ...++.+++.++
T Consensus 71 ~~~~~~~a~~~ilvydit~~---~Sf~~~~~w~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~r~----v~~~e~~~~a~~ 142 (170)
T cd04116 71 RTPFYRGSDCCLLTFAVDDS---QSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQ----VSTEEAQAWCRE 142 (170)
T ss_pred HHHHEECCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCCCCE-EEEEECCCHHHHCC----CCHHHHHHHHHH
T ss_conf 17660047733999978887---99999999999999971445788840-99996111130378----899999999998
Q ss_pred EEEEEEEECCCCEEEEEEE
Q ss_conf 1453221023311467641
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~ 175 (392)
. ...+++.+||.+|.+
T Consensus 143 ~---~~~~~~E~SAk~g~n 158 (170)
T cd04116 143 N---GDYPYFETSAKDATN 158 (170)
T ss_pred C---CCCEEEEECCCCCCC
T ss_conf 5---997899988888818
No 186
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.87 E-value=8e-09 Score=73.79 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=82.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE--EEEEEC----------CCEEEEEEECCC
Q ss_conf 79999904689887899999987644420013126868698629206378--999821----------990899984787
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA--HVSYET----------DKRFYSHIDCPG 80 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~----------~~~~i~iiD~PG 80 (392)
+.|+++|.-..|||+|+-++... ...++-..-+.++.. ...++. ....+.|.||+|
T Consensus 5 ~KivvvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaG 72 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDN------------KFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG 72 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCC
T ss_conf 89999999998889999999619------------589986884322688999998476554445788589999998988
Q ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 30246779877400233145201234433-210677888863---18760233100233356122211012321001110
Q gi|254780263|r 81 HADYVKNMITGATQADGAILVCAAEDGPK-PQTREHILLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 81 H~~f~~~mi~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
++.|-.-.-.-...+|++|||.|.+.--. ..-++-+..++. ..-++++++-||+|+.+..+ ...++.+++.++
T Consensus 73 qe~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~---V~~~e~~~~a~~ 149 (180)
T cd04127 73 QERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ---VSEEQAKALADK 149 (180)
T ss_pred CHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCC---CCHHHHHHHHHH
T ss_conf 63047888999875436589996898899998999999999854668985787503236675088---899999999998
Q ss_pred EEEEEEEECCCCEEEEEEE
Q ss_conf 1453221023311467641
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~ 175 (392)
. +.|++.+||.+|.+
T Consensus 150 ~----~~~~~E~SAk~g~n 164 (180)
T cd04127 150 Y----GIPYFETSAATGTN 164 (180)
T ss_pred C----CCEEEEECCCCCCC
T ss_conf 4----99799980377919
No 187
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.87 E-value=1.2e-08 Score=72.61 Aligned_cols=143 Identities=17% Similarity=0.192 Sum_probs=88.2
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE--EEEEEEEC--CCEEEEEEECCCCHHHHHH
Q ss_conf 2799999046898878999999876444200131268686986292063--78999821--9908999847873024677
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA--TAHVSYET--DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~--~~~~i~iiD~PGH~~f~~~ 87 (392)
.+.|+++|.-..|||+|+.+++.. ...++-+ -||. .....++. ....+.|.||+|.+.|-+.
T Consensus 2 ~~Kiv~lGd~~VGKTsli~r~~~~------------~F~~~~~--~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~~~~s 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAG------------RFPERTE--ATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC------------CCCCCCC--CCEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH
T ss_conf 699999997997799999999539------------8899878--86307878999999999999999977885305677
Q ss_pred HHHH-HHCCCCEEEEECCCCCCCCCHHHHH----HHHHH----CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 9877-4002331452012344332106778----88863----1876023310023335612221101232100111014
Q gi|254780263|r 88 MITG-ATQADGAILVCAAEDGPKPQTREHI----LLARQ----IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 88 mi~g-~~~~D~ailvVda~~G~~~QT~eh~----~l~~~----lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
|... ...+|++|||.|.+.- ++-+.+ ..++. -.+| ++++-||.|+.+.-+ ...++.+++.++.
T Consensus 68 ~~~~~~~~a~~~ilvydvt~~---~Sf~~~~~w~~~i~~~~~~~~~p-~vlVGNK~DL~~~r~---Vs~~e~~~~a~~~- 139 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNM---ASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQ---VPTDLAQRFADAH- 139 (170)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCHHHCC---CCHHHHHHHHHHC-
T ss_conf 789984577357999504747---67999999999999865888997-999999821341178---7999999999977-
Q ss_pred EEEEEECCCCEEEEEEECCCC
Q ss_conf 532210233114676411444
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNK 179 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~ 179 (392)
+.+++.+||..|.++.|.
T Consensus 140 ---~~~~~E~SAK~~~~~~nV 157 (170)
T cd04115 140 ---SMPLFETSAKDPSENDHV 157 (170)
T ss_pred ---CCEEEEECCCCCCCCCCH
T ss_conf ---999999888998517088
No 188
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.84 E-value=9.7e-09 Score=73.25 Aligned_cols=143 Identities=19% Similarity=0.184 Sum_probs=82.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-..-+.++.....+.. ....+.|.||+|++.|-.-.-.
T Consensus 3 ~Kiv~vGd~~vGKTsli~r~~~~------------~f~~~y~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~~~~~ 70 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD------------TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 99999999997899999999439------------999874785440489999999999999999989998234626788
Q ss_pred HHHCCCCEEEEECCCCCC-CCCHHHHHHHH-H--HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 740023314520123443-32106778888-6--3187602331002333561222110123210011101453221023
Q gi|254780263|r 91 GATQADGAILVCAAEDGP-KPQTREHILLA-R--QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~-~~QT~eh~~l~-~--~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
-...+|++|||.|.+.-. +..-.+-+..+ + .-.+| +|++-||+|+.+..+ ...++.+++.++. +.+++
T Consensus 71 ~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~-~ilvgNK~DL~~~r~---v~~~~~~~~a~~~----~~~~~ 142 (166)
T cd01869 71 YYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRV---VDYSEAQEFADEL----GIPFL 142 (166)
T ss_pred HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEECCCCCCC---CCHHHHHHHHHHC----CCEEE
T ss_conf 856326779971179989999999999999986787774-488613201131466---7999999999983----99699
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
.+||.+|.+
T Consensus 143 E~SAk~g~n 151 (166)
T cd01869 143 ETSAKNATN 151 (166)
T ss_pred EECCCCCCC
T ss_conf 987687806
No 189
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.84 E-value=1.2e-08 Score=72.76 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=84.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHH
Q ss_conf 827999990468988789999998764442001312686869862920637899-9821--9908999847873024677
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~ 87 (392)
|+..|+++|.-..|||+|+.+++... ..+| .--|+.-.+. .... ....+.|.||+|+++|-.-
T Consensus 1 pt~Kiv~lGd~~VGKTsli~r~~~~~------------f~~~--y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~ 66 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSY------------FVTD--YDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC------------CCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHH
T ss_conf 93799999999978899999998098------------9875--678413589999999999999999989886031256
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHH--HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 98774002331452012344332106778--88863---18760233100233356122211012321001110145322
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHI--LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
.-.-...||+++||.|.++-..=+..+.+ .+.+. -.+| +|++-||+|+.+..+ ...++.+++.++. +
T Consensus 67 ~~~~~~~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilVgNK~DL~~~r~---Vs~~e~~~~a~~~----~ 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRK---VSREEGQELARKL----K 138 (164)
T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCHHHHCC---CCHHHHHHHHHHC----C
T ss_conf 7987346787468985673543999999999999861887775-265303457354088---9999999999981----9
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780263|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
.+++.+||..+.
T Consensus 139 ~~~~E~SAk~~~ 150 (164)
T cd04145 139 IPYIETSAKDRL 150 (164)
T ss_pred CEEEEECCCCCC
T ss_conf 989998548682
No 190
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.84 E-value=1.1e-08 Score=72.94 Aligned_cols=149 Identities=16% Similarity=0.155 Sum_probs=81.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467798774
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
+.|+++|....|||+|+-+..... ..+. .+..-|+...............+.|.||+|.+.|-.-.-.-.
T Consensus 1 iKivlvGd~~VGKTsLi~rf~~~~--------F~~~--y~~Tig~d~~~k~i~v~~~~v~l~iwDtaGqe~f~~~~~~y~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGE--------FDED--YIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--------CCCC--CCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 989999999989899999995399--------9999--888733898999999999999999986776487899999986
Q ss_pred HCCCCEEEEECCCCCCC-CCHHHHHHHHHHC-CCCCEEEEECCCCCCCCH--HHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 00233145201234433-2106778888631-876023310023335612--2211012321001110145322102331
Q gi|254780263|r 93 TQADGAILVCAAEDGPK-PQTREHILLARQI-GISSIVVYMNKVDAVDDD--ELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~-~QT~eh~~l~~~l-gi~~iIv~iNKmD~v~~~--~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
..|++++||.|.+.-.. ..-++-+..++.. .-...|++-||.|+.... +..+.+..+-.++.++. +.|++.+
T Consensus 71 ~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~----~~~f~et 146 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAM----KAPLIFC 146 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHC----CCEEEEE
T ss_conf 478789999978998999989999999997689998899998663556556223102489999999984----9989999
Q ss_pred EEEEEEE
Q ss_conf 1467641
Q gi|254780263|r 169 SALCALQ 175 (392)
Q Consensus 169 sa~~g~~ 175 (392)
||.++.+
T Consensus 147 SAk~~~n 153 (182)
T cd04128 147 STSHSIN 153 (182)
T ss_pred ECCCCCC
T ss_conf 4799979
No 191
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.83 E-value=6.6e-09 Score=74.29 Aligned_cols=137 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789---998219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|....|||+|+.++... ...++- --|+...+ .....+...+.|.||+|+++|-.-.-.
T Consensus 2 KvvlvGd~~VGKTsli~r~~~~------------~F~~~y--~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD------------EFVEDY--EPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 7999999998899999999719------------898774--88544168999999999999999989886624889999
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 74002331452012344332106778-----888631---8760233100233356122211012321001110145322
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
-...||+++||.|.+.- +|-+.+ .+.+.. .+| ++++-||+|+.+..+ ...++.+++.++. +
T Consensus 68 ~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~~~~~~~~~~~p-iilVgNK~DL~~~r~---v~~~e~~~~a~~~----~ 136 (164)
T cd04139 68 YHRSGEGFLLVFSITDM---ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQ---VSSEEAANLARQW----G 136 (164)
T ss_pred HHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCCC-EEEEEEEHHHHHCCC---CCHHHHHHHHHHC----C
T ss_conf 88637688999977977---88999999999999860878863-698733032334177---8999999999983----9
Q ss_pred EECCCCEEEEEEE
Q ss_conf 1023311467641
Q gi|254780263|r 163 TPIIRGSALCALQ 175 (392)
Q Consensus 163 ~pii~~sa~~g~~ 175 (392)
.+++.+||.+|.+
T Consensus 137 ~~~~E~SAk~g~n 149 (164)
T cd04139 137 VPYVETSAKTRQN 149 (164)
T ss_pred CEEEEECCCCCCC
T ss_conf 9899982687908
No 192
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.83 E-value=9e-09 Score=73.45 Aligned_cols=143 Identities=21% Similarity=0.163 Sum_probs=82.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-..-+.++.....++.+ ...+.|.||+|++.|-.-.-.
T Consensus 4 ~KivlvGd~~vGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~~~~~~ 71 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED------------SFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTA 71 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 99999999997889999999609------------999986898646889999999999999999989997001166799
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 7400233145201234433-210677888863---187602331002333561222110123210011101453221023
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
-...+|++|||.|.+.-.. ..-++-+.-++. -.+| ++++-||.|+.+..+ ...++..++.++. +.+++
T Consensus 72 y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~-~ilVgNK~Dl~~~r~---v~~~e~~~~a~~~----~~~~~ 143 (167)
T cd01867 72 YYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRV---VSKEEGEALADEY----GIKFL 143 (167)
T ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC-EEEECCCCCCHHCCC---CCHHHHHHHHHHH----CCEEE
T ss_conf 856505889955689879999999999999986699970-576421245023077---9999999999980----99699
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
.+||.+|.+
T Consensus 144 e~SAktg~n 152 (167)
T cd01867 144 ETSAKANIN 152 (167)
T ss_pred EECCCCCCC
T ss_conf 982257907
No 193
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.83 E-value=1e-08 Score=73.10 Aligned_cols=145 Identities=20% Similarity=0.188 Sum_probs=79.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206-37899982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
+.|+++|....|||+|+.++.... .+++- --|+ +.-...+..++ ..+.|.||+|+++|-.-.-
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~------------f~~~y--~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK------------FPTEY--VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC------------CCCCC--CCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 989999999966999999996299------------99875--8803466689999999999999998998710241322
Q ss_pred HHHHCCCCEEEEECCCCCC-CCCHHH-HHH-HHHH-CCCCCEEEEECCCCCCCCHHHHH--------HCCCCCCEEEEEE
Q ss_conf 7740023314520123443-321067-788-8863-18760233100233356122211--------0123210011101
Q gi|254780263|r 90 TGATQADGAILVCAAEDGP-KPQTRE-HIL-LARQ-IGISSIVVYMNKVDAVDDDELLD--------ISEYEIRDLLKEH 157 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~-~~QT~e-h~~-l~~~-lgi~~iIv~iNKmD~v~~~~~~~--------~i~~~i~~~l~~~ 157 (392)
.-...+|++|||.|.++-. +..-++ -+. +-+. -.+| +|++-||+|+.+...... ...++..++.++.
T Consensus 67 ~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~ 145 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred HHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 3444265899999689778899999999999998599986-899998710012300022331147515899999999984
Q ss_pred EEEEEEECCCCEEEEEEE
Q ss_conf 453221023311467641
Q gi|254780263|r 158 KYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~ 175 (392)
+ ..+++.+||.+|.+
T Consensus 146 ~---~~~f~E~SAk~g~n 160 (171)
T cd00157 146 G---AIGYMECSALTQEG 160 (171)
T ss_pred C---CCEEEEECCCCCCC
T ss_conf 9---98899978789959
No 194
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.82 E-value=1.4e-08 Score=72.33 Aligned_cols=135 Identities=27% Similarity=0.278 Sum_probs=81.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECC--CEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999904689887899999987644420013126868698629206-3789998219--9089998478730246779877
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETD--KRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~g 91 (392)
|+++|.-..|||+|+.+++...-. + +- --|+ +.-...+..+ ..++.|.|++|+++|..-.-.-
T Consensus 2 i~ivG~~~vGKTsli~r~~~~~f~--------~----~~--~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~ 67 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGTFV--------E----EY--DPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLY 67 (160)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC--------C----CC--CCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 999996996799999999619599--------8----77--883004899999976699999999799962355788999
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHH----H-HHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 4002331452012344332106778----8-88631---87602331002333561222110123210011101453221
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHI----L-LARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
...+|+++||.|.+.- +|-+++ . +.+.. .+| ++++-||.|+.+..+ ...++.+++.++. ..
T Consensus 68 ~~~a~~~ilvfd~~~~---~Sf~~i~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~---V~~~e~~~~a~~~----~~ 136 (160)
T cd00876 68 IRQGDGFILVYSITDR---ESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQ---VSKEEGKALAKEW----GC 136 (160)
T ss_pred HHHCCEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHCCC---CCHHHHHHHHHHC----CC
T ss_conf 7643689997328987---89999999999999972878862-999997456223078---9999999999984----99
Q ss_pred ECCCCEEEEEE
Q ss_conf 02331146764
Q gi|254780263|r 164 PIIRGSALCAL 174 (392)
Q Consensus 164 pii~~sa~~g~ 174 (392)
+++.+||.+|.
T Consensus 137 ~y~e~Sak~g~ 147 (160)
T cd00876 137 PFIETSAKDNI 147 (160)
T ss_pred EEEEECCCCCC
T ss_conf 79998479894
No 195
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.82 E-value=8.7e-09 Score=73.55 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=83.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+-++... ...++-..-+..+.....+.. ....+.|.||+|.+.|-.-.-.
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 68 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED------------EFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNS 68 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 97999999997899999999519------------689986886540357999999999999999989997104578999
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 7400233145201234433-2106778888631--876023310023335612221101232100111014532210233
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
-...||++|||.|.+.-.. ....+.+..++.. .-+++|++-||+|+.+..+ ...++.+++.++. +.+++.
T Consensus 69 ~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~---V~~~e~~~~a~~~----~~~~~E 141 (188)
T cd04125 69 YYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKV---VDSNIAKSFCDSL----NIPFFE 141 (188)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf 863786799980389878999999999999987898662451001344766067---9999999999986----998999
Q ss_pred CEEEEEEEC
Q ss_conf 114676411
Q gi|254780263|r 168 GSALCALQG 176 (392)
Q Consensus 168 ~sa~~g~~~ 176 (392)
+||.++.+.
T Consensus 142 ~SAktg~nV 150 (188)
T cd04125 142 TSAKQSINV 150 (188)
T ss_pred ECCCCCCCH
T ss_conf 747889098
No 196
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.82 E-value=1.4e-08 Score=72.28 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=80.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH--HHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869--86292063789998219908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEE--KLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E--~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|....|||+|+.++... ...++ ..-|.+.......+......+.|-||||++.|-.-.-.
T Consensus 1 iKivllGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~~~~~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD------------GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHAS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 98999998996789999999809------------779972665415799999999999999999979998434324699
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 7400233145201234433-210677888863--1876023310023335612221101232100111014532210233
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
-...||+++||.|.+.-.. ..-.+-+.-++. -.+| +|++-||+|+- .+ ..+ +-.++.++. +.|++.
T Consensus 69 y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p-~ilVgNK~DL~-~~-~~~----~~~~~a~~~----~~~f~e 137 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLD-PS-VTQ----KKFNFAEKH----NLPLYY 137 (161)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCC-CH-HHH----HHHHHHHHC----CCEEEE
T ss_conf 73568767999968977889999999999998686998-99999971177-42-589----999999986----991999
Q ss_pred CEEEEEEE
Q ss_conf 11467641
Q gi|254780263|r 168 GSALCALQ 175 (392)
Q Consensus 168 ~sa~~g~~ 175 (392)
+||.+|.+
T Consensus 138 tSAk~g~n 145 (161)
T cd04124 138 VSAADGTN 145 (161)
T ss_pred EECCCCCC
T ss_conf 90783809
No 197
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.82 E-value=1.3e-08 Score=72.53 Aligned_cols=145 Identities=17% Similarity=0.088 Sum_probs=82.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219--9089998478730246779877
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~g 91 (392)
.|+++|.-..|||+|+-++... ..+++-.--+.++.....++.+ ...+.|-||+|.+.|-.-.-.-
T Consensus 2 KivlvGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~l~~~y 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD------------VFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHH
T ss_conf 8999998998989999999639------------8899725634505899999999999999999899997466443777
Q ss_pred HHCCCCEEEEECCCCCCC-CCHHHHHH-HHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 400233145201234433-21067788-88631--876023310023335612221101232100111014532210233
Q gi|254780263|r 92 ATQADGAILVCAAEDGPK-PQTREHIL-LARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~-~QT~eh~~-l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
...||++|||.|.+.-.. ...++-+. +.+.. ..+.++++-||+|+.+..++.. .+++..++-++. +.|++.
T Consensus 70 ~r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~-~~~~~~~~a~~~----~~~~~E 144 (170)
T cd04108 70 YRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYAL-MEQDAIKLAAEM----QAEYWS 144 (170)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEE-EHHHHHHHHHHC----CCEEEE
T ss_conf 327875899997898789999999999999850899982999998413798755764-489999999877----987999
Q ss_pred CEEEEEEE
Q ss_conf 11467641
Q gi|254780263|r 168 GSALCALQ 175 (392)
Q Consensus 168 ~sa~~g~~ 175 (392)
+||.+|.+
T Consensus 145 ~SAk~g~n 152 (170)
T cd04108 145 VSALSGEN 152 (170)
T ss_pred ECCCCCCC
T ss_conf 85578818
No 198
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.81 E-value=1.1e-08 Score=72.97 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=81.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEE--ECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998--2199089998478730246779877
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSY--ETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
.|+++|.-..|||+|+.++... ...++-..-+.++.....+ ......+.|.||+|.+.|-.-.-.-
T Consensus 2 Kivl~Gd~~vGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~~~~~~ 69 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN------------KFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSY 69 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 8999994996799999999729------------8999879976457899999999999999999899970122678998
Q ss_pred HHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 400233145201234433-2106778888631---876023310023335612221101232100111014532210233
Q gi|254780263|r 92 ATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
...+|+++||.|.++-.. ..-.+-+..++.. .+| ++++-||+|+.+..+ ...++.+++.++. +.+++.
T Consensus 70 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~-iilVgNK~Dl~~~r~---V~~~e~~~~a~~~----~~~~~E 141 (161)
T cd04113 70 YRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQRE---VTFLEASRFAQEN----GLLFLE 141 (161)
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHCCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf 40577789953689889999999999999986799964-986034344000378---8999999999985----997999
Q ss_pred CEEEEEEE
Q ss_conf 11467641
Q gi|254780263|r 168 GSALCALQ 175 (392)
Q Consensus 168 ~sa~~g~~ 175 (392)
+||.+|.+
T Consensus 142 ~SAk~~~n 149 (161)
T cd04113 142 TSALTGEN 149 (161)
T ss_pred ECCCCCCC
T ss_conf 74156905
No 199
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.81 E-value=1e-08 Score=73.11 Aligned_cols=139 Identities=14% Similarity=0.204 Sum_probs=82.5
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEE--ECCCEEEEEEECCCCHHHHHH
Q ss_conf 279999904689887899999987644420013126868698629206--3789998--219908999847873024677
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSY--ETDKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~--~~~~~~i~iiD~PGH~~f~~~ 87 (392)
.+.|+++|--.-|||+|+.++....- .++ ..-|+ +.....+ +.....+.|-||+|++.|..-
T Consensus 6 ~~KivllGd~~VGKTsl~~r~~~~~f------------~~~--y~~Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST------------ESP--YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTI 71 (189)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC------------CCC--CCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHH
T ss_conf 99999999899789999999974997------------898--6876537989999999999999999817886221167
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHH----HHHH--HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 98774002331452012344332106778----8886--31876023310023335612221101232100111014532
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHI----LLAR--QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~----~l~~--~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
.-.=...||++|||-|.+.- +|-+.+ ..++ .-++| +|++-||+|+....+ ...++.+++.+..
T Consensus 72 ~~~y~r~a~~~ilvyDvt~~---~Sf~~l~~w~~~i~~~~~~~p-~iLVGNK~DL~~~r~---V~~ee~~~~A~~~---- 140 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNR---WSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQ---VATEQAQAYAERN---- 140 (189)
T ss_pred HHHHHHHCCCEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHCCC---CCHHHHHHHHHHC----
T ss_conf 89886633704898227988---999999999999999768987-899613255033088---9999999999988----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
+++++.+||.+|.+
T Consensus 141 ~~~f~EtSAk~g~n 154 (189)
T cd04121 141 GMTFFEVSPLCNFN 154 (189)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99999960067939
No 200
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.80 E-value=2.1e-08 Score=71.21 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=74.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|.++|==+|||||++.+|.... ..+. .--|+-.....+++++.++++-|.+|++.|-.-.-.=...
T Consensus 2 IlilGLd~aGKTTil~~l~~~~--------~~~~------~~PT~Gf~~~~i~~~~~~l~~wDlgGq~~~R~~W~~Y~~~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--------SLES------VVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSG 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--------CCCC------CCCCCCCCEEEEEECCEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 9999679998999999981699--------8765------3563277469999899999998537528886569987117
Q ss_pred CCCEEEEECCCC-CCCCCHHHHHHH--HHHCCCCCEEEEECCCCCCCC
Q ss_conf 233145201234-433210677888--863187602331002333561
Q gi|254780263|r 95 ADGAILVCAAED-GPKPQTREHILL--ARQIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 95 ~D~ailvVda~~-G~~~QT~eh~~l--~~~lgi~~iIv~iNKmD~v~~ 139 (392)
+|+.++|||+++ .-+.+.++.+.- ....++| ++|+-||.|+.+.
T Consensus 68 ~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~P-lLIlaNKqDl~~a 114 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAA 114 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCC
T ss_conf 7589999956888899999999999970879986-9999863243369
No 201
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.80 E-value=1.8e-08 Score=71.55 Aligned_cols=141 Identities=22% Similarity=0.176 Sum_probs=80.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC--CEEEEEEECCCCHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--3789998219--9089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD--KRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~--~~~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|.-..|||+|+.+++.. ...+|-. -|| +.....+..+ ...+.|.||||.++|-.-.
T Consensus 4 ~Kiv~iGd~~VGKTsli~r~~~~------------~f~~~~~--~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN------------EFNLDSK--STIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAIT 69 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCC--CCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 89999999997899999999729------------8999889--874478789999999999999999899972126789
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHH-HHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433210677-8888631---876023310023335612221101232100111014532210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREH-ILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh-~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
-.-...+|+++||.|.+.-..=+..+. +..++.. .+| ++++-||+|+.+..+ ...++..++.++. +.+
T Consensus 70 ~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~-iilVgnK~DL~~~r~---Vs~~e~~~~a~~~----~~~ 141 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRA---VPTEEAKAFAEKN----GLS 141 (165)
T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHHCC---CCHHHHHHHHHHC----CCE
T ss_conf 98733205148986269889999999999999985557735-987023478688578---8899999999985----997
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++.+||.+|.+
T Consensus 142 ~~E~SAk~g~n 152 (165)
T cd01868 142 FIETSALDGTN 152 (165)
T ss_pred EEEECCCCCCC
T ss_conf 99967888929
No 202
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.79 E-value=2.1e-09 Score=77.41 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHEEEC
Q ss_conf 3554454301487424534896799950687432125412100-1211443210013666411245432202117732
Q gi|254780263|r 217 GIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCA 293 (392)
Q Consensus 217 ~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl~~ 293 (392)
+.+++|++++-||+||+++.|+++.....+++....++..++. .++++++|+|||+||+. ...+++.||+||+
T Consensus 11 d~~h~grlaf~RV~SG~l~~G~~v~n~rtgK~~ri~r~~~~~a~~Re~ie~A~aGDIvav~----g~~~~~tGDTL~~ 84 (85)
T cd03689 11 DPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLV----NPGNFQIGDTLTE 84 (85)
T ss_pred CCCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECCHHHHHHCCCEEECEEECCCEEEEE----CCCCCEECCCCCC
T ss_conf 9100771899999872986899999712796788354453322770080349389899982----7998731465137
No 203
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.78 E-value=1.1e-08 Score=72.86 Aligned_cols=142 Identities=19% Similarity=0.108 Sum_probs=81.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC-C--EEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--3789998219-9--08999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD-K--RFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~-~--~~i~iiD~PGH~~f~~~ 87 (392)
+.|+++|--.-|||+|+-++.... ..++ .--|| +.....++.+ + ..+.|-||+|+++|-.-
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~------------F~~~--y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~~~~l 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGI------------FSQH--YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCCC
T ss_conf 979999999978999999998299------------9998--88875677899899967981999999868998322200
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHH--HH------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 98774002331452012344332106778--88------86318760233100233356122211012321001110145
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHI--LL------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~--~l------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
.-.-...+|++|||.|.+.-..=+.-..+ .+ ...-.+| ++++-||+|+....+ ...++..++.++.++
T Consensus 67 ~~~y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ip-iilVgNK~DL~~~~~---v~~ee~~~~a~~~~~ 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLA---KDGEQMDQFCKENGF 142 (201)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCCCCCC---CCHHHHHHHHHHCCC
T ss_conf 3755557764799982798899998999999999986213789871-899866556411256---899999999997799
Q ss_pred EEEEECCCCEEEEEEE
Q ss_conf 3221023311467641
Q gi|254780263|r 160 SDDTPIIRGSALCALQ 175 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~ 175 (392)
..++.+||.+|.+
T Consensus 143 ---~~~~EtSAktg~n 155 (201)
T cd04107 143 ---IGWFETSAKEGIN 155 (201)
T ss_pred ---CEEEEECCCCCCC
T ss_conf ---8099977999949
No 204
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.78 E-value=5.9e-09 Score=74.57 Aligned_cols=165 Identities=18% Similarity=0.252 Sum_probs=97.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE-EEEEEEC-CCEEEEEEECCC-------CHH
Q ss_conf 7999990468988789999998764442001312686869862920637-8999821-990899984787-------302
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT-AHVSYET-DKRFYSHIDCPG-------HAD 83 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~-~~~~i~iiD~PG-------H~~ 83 (392)
+|||+.|-..+||||++.+|-+. +.+..+.+.+ |.+-.. ..+.|.. +--.+++.|.|| ..+
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl-~~~d~~aA~t---------Gv~eTT~~~~~Y~~p~~pnv~lwDlPG~Gt~~f~~~~ 71 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGV-GHEEEGAAPT---------GVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDD 71 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCCCCC---------CCCCCCCCCEECCCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 17999558998689999998688-9887775888---------8874677862047999998769728999987659899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH-HHHHHHCCCCCEEEEECCCCCCCC------------HHHHHHCCCCC
Q ss_conf 46779877400233145201234433210677-888863187602331002333561------------22211012321
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREH-ILLARQIGISSIVVYMNKVDAVDD------------DELLDISEYEI 150 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh-~~l~~~lgi~~iIv~iNKmD~v~~------------~~~~~~i~~~i 150 (392)
|+..| +....|+-|++.|. -+.++-.. +..++.+|.+ +.++-||+|.--. ++..+.+....
T Consensus 72 Yl~~~--~~~~yD~fiiiss~---rf~~nd~~la~~i~~~gK~-fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c 145 (197)
T cd04104 72 YLEEM--KFSEYDFFIIISST---RFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred HHHHC--CCCCCCEEEEEECC---CCCHHHHHHHHHHHHCCCC-EEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99865--85545789998388---6414269999999980992-899986121400056637876659999999999999
Q ss_pred CEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 0011101453221023311467641144456521233203443102522221
Q gi|254780263|r 151 RDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 151 ~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
.+.|++.+.. +.+++-+|.+ ....|+-+.|.+.+..-+|.-.|
T Consensus 146 ~~~L~~~gv~-~p~VFLvS~~--------~~~~yDFp~L~~tl~~~Lp~~kr 188 (197)
T cd04104 146 LENLQEAGVS-EPPVFLVSNF--------DPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred HHHHHHCCCC-CCCEEEEECC--------CCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999986999-9998999379--------82207768999999998089889
No 205
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.77 E-value=1.7e-08 Score=71.75 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=81.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-..-+-++.....+..+ ...+.|.||+|+++|-.-.-.
T Consensus 3 ~KivlvGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK------------KFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRS 70 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHH
T ss_conf 99999999995799999999129------------889999997446889999999999999999989998544425211
Q ss_pred HHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 740023314520123443-32106778888631---87602331002333561222110123210011101453221023
Q gi|254780263|r 91 GATQADGAILVCAAEDGP-KPQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
-...+|++|||.|.+.-. +..-.+-+..++.. ..+ ++++-||+|+.+..+ ...++..++.++. +.+++
T Consensus 71 ~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~-iilVGNK~DL~~~r~---V~~~e~~~~a~~~----~~~~~ 142 (166)
T cd04122 71 YYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRD---VTYEEAKQFADEN----GLLFL 142 (166)
T ss_pred HEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCE-EEECCCCCCHHHCCC---CCHHHHHHHHHHC----CCEEE
T ss_conf 143154659972587476799999999999985699975-870340157444389---9999999999986----99899
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
.+||.+|.+
T Consensus 143 E~SAk~g~n 151 (166)
T cd04122 143 ECSAKTGEN 151 (166)
T ss_pred EECCCCCCC
T ss_conf 986587808
No 206
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.76 E-value=2.9e-08 Score=70.31 Aligned_cols=138 Identities=23% Similarity=0.229 Sum_probs=80.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEE--CCCEEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206-37899982--1990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYE--TDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~--~~~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|.-..|||+|+.++.... ..++- --|+ +.....+. .....+.|.||+|+++|-.-.-
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~------------f~~~y--~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT------------FIEKY--DPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRD 67 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCCCCEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 399998999978999999997098------------99755--8852331679999888999999998988542567889
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 7740023314520123443321067788-----8863---1876023310023335612221101232100111014532
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHIL-----LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
.-...||+++||.|.+.- +|-+.+. +.+. -++| +|++-||+|+.+..+ ...++.+++-++.
T Consensus 68 ~~~~~a~~~ilvydit~~---~Sf~~l~~~~~~i~~~~~~~~~p-iilVgNK~DL~~~r~---V~~~e~~~~a~~~---- 136 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQ---QTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESERE---VSSAEGRALAEEW---- 136 (163)
T ss_pred HHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCCCCC---CCHHHHHHHHHHC----
T ss_conf 985578656897127988---99999999999999973899963-999743134001276---9999999999985----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
+.+++.+||.++.+
T Consensus 137 ~~~~~E~SAk~~~n 150 (163)
T cd04176 137 GCPFMETSAKSKTM 150 (163)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899985687817
No 207
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.75 E-value=4.4e-09 Score=75.37 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=61.3
Q ss_pred CEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCE
Q ss_conf 0000000135544543014874245348967999506874321254121001----211443210013666411245432
Q gi|254780263|r 209 LMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRAD 284 (392)
Q Consensus 209 r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~d 284 (392)
...|+++...++.|++..+||.||+|+.||++.+...+. ..++.+++.+ +.++++|.|||++++. | ..+
T Consensus 2 ~a~VFK~~~d~~~Gri~~~RV~~G~l~~g~~v~~~~~~~---~~kv~~l~~~~g~~~~~v~~~~aGdI~ai~--g--l~~ 74 (83)
T cd04088 2 VALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGK---KERVGRLLRMHGKKQEEVEEAGAGDIGAVA--G--LKD 74 (83)
T ss_pred EEEEEEEEECCCCCEEEEEEEECCEECCCCEEEECCCCE---EEEECEEEEEECCCCEECCEECCCCEEEEE--C--CCC
T ss_conf 099997665598886999999589986797588606510---488220478856982394688899999995--8--888
Q ss_pred EECHHEEEC
Q ss_conf 202117732
Q gi|254780263|r 285 VPRGRVVCA 293 (392)
Q Consensus 285 i~rGdvl~~ 293 (392)
++.||+||+
T Consensus 75 ~~~GDTl~d 83 (83)
T cd04088 75 TATGDTLCD 83 (83)
T ss_pred CCCCCCCCC
T ss_conf 705675369
No 208
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.75 E-value=2.7e-08 Score=70.47 Aligned_cols=137 Identities=23% Similarity=0.263 Sum_probs=81.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789-9982199--08999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|.-..|||+|+-+++... ..++- --|+.-.+ ..+..++ ..+.|.||+|+++|-.-.-.
T Consensus 2 Kiv~vGd~~vGKTsli~r~~~~~------------f~~~y--~~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~~~~~ 67 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH------------FVDDY--DPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQ 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHH
T ss_conf 89999999978999999997297------------99877--88136789999999999999999989997103567777
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 74002331452012344332106778-----888631---8760233100233356122211012321001110145322
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
-...+|++|||.|.++ ++|-+.+ .+.+.. .+| ++++-||+|+.+..+ ...++..++.++. +
T Consensus 68 ~~~~a~~~ilvydi~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~DL~~~r~---V~~~e~~~~a~~~----~ 136 (164)
T smart00173 68 YMRTGEGFLLVYSITD---RQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERV---VSTEEGKELARQW----G 136 (164)
T ss_pred HCCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCHHCCC---CCHHHHHHHHHHC----C
T ss_conf 5379877999830798---899999999999999861888886-687775346301178---9999999999983----9
Q ss_pred EECCCCEEEEEEE
Q ss_conf 1023311467641
Q gi|254780263|r 163 TPIIRGSALCALQ 175 (392)
Q Consensus 163 ~pii~~sa~~g~~ 175 (392)
.+++.+||.+|.+
T Consensus 137 ~~~~E~SAk~g~n 149 (164)
T smart00173 137 CPFLETSAKERVN 149 (164)
T ss_pred CEEEEECCCCCCC
T ss_conf 9899985898817
No 209
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.75 E-value=2.7e-08 Score=70.47 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=81.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE--EEEEEECCCE--EEEEEECCCCHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637--8999821990--89998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT--AHVSYETDKR--FYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~--~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|.-..|||+|+.+++.. ...++-..-+.++. ....+..++. .+.|-||+|.+.|-.-.
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~------------~f~~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~l~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG------------IFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCH
T ss_conf 98999999998899999999849------------689876885562578878998679979999999789970134152
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHH-HHH-H-HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 8774002331452012344332106778-888-6-318760233100233356122211012321001110145322102
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHI-LLA-R-QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~-~l~-~-~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
-.-...+|++|||.|.+.-..=+..+.+ ..+ . .-.+| +|++-||+|+.+... ...++.+++.++. +.|+
T Consensus 69 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~p-iilVgNK~DL~~~r~---V~~~e~~~~a~~~----~~~~ 140 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAV---ITNEEAEALAKRL----QLPL 140 (162)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHCCC---CCHHHHHHHHHHC----CCEE
T ss_conf 4561230312688406988999999999999997669962-999840544410177---8999999999986----9879
Q ss_pred CCCEEEEEEE
Q ss_conf 3311467641
Q gi|254780263|r 166 IRGSALCALQ 175 (392)
Q Consensus 166 i~~sa~~g~~ 175 (392)
+.+||.++.+
T Consensus 141 ~E~SAk~~~n 150 (162)
T cd04106 141 FRTSVKDDFN 150 (162)
T ss_pred EEECCCCCCC
T ss_conf 9986888829
No 210
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.75 E-value=2.1e-08 Score=71.13 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=86.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.|+++|....|||+|+-++....- ++.. .+-.-|.........+......+.|.||+|+++|-.-.-.-..
T Consensus 2 KIv~vGd~~VGKTsli~r~~~~~f--------~~~~-~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~l~~~~~~ 72 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAF--------LNGN-FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYR 72 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--------CCCC-CCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHHHHH
T ss_conf 899999499879999999995978--------9998-6776524779999999999999999979986334646477711
Q ss_pred CCCCEEEEECCCCCCCCCHHHHH----HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 02331452012344332106778----88863---187602331002333561222110123210011101453221023
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQTREHI----LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~----~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
.+|++|||.|.+.- ++-+.+ .-++. -.+| ++++-||+|+.+..+ ...++.+++.++. +.+++
T Consensus 73 ~a~~~ilvydit~~---~Sf~~l~~w~~~i~~~~~~~~~-iilVGNK~DL~~~r~---V~~~e~~~~a~~~----~~~f~ 141 (191)
T cd04112 73 DAHALLLLYDITNK---ASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERV---VKREDGERLAKEY----GVPFM 141 (191)
T ss_pred CCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCC---CCHHHHHHHHHHC----CCEEE
T ss_conf 77778999727988---9999999999999986667853-898612465530267---9999999999982----99799
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 311467641144456521233203443102
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
.+||.++. ++..+++.|...
T Consensus 142 EtSAkt~~----------nI~e~F~~i~~~ 161 (191)
T cd04112 142 ETSAKTGL----------NVELAFTAVAKE 161 (191)
T ss_pred EECCCCCC----------CHHHHHHHHHHH
T ss_conf 98548980----------979999999999
No 211
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.74 E-value=3e-08 Score=70.18 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=86.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.|+++|.-..|||||+-++.... ..+. .+..-|.........+......+.|.|++|.+.|-.-+-.-..
T Consensus 2 Ki~vvG~~~vGKTsli~r~~~~~--------f~~~--~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~~~~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT--------FDNQ--YQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC--------CCCC--CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 79999979978999999993199--------9998--4897567889999999999999999979985315788898866
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHH-HHHH-C-CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEE
Q ss_conf 023314520123443321067788-8863-1-876023310023335612221101232100111014532210233114
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQTREHIL-LARQ-I-GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSA 170 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~~-l~~~-l-gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa 170 (392)
.+|++++|.|.++-..-+..+++. .++. . .-+.++++-||+|+.+..+ ...++..++.++. +.+++.+||
T Consensus 72 ~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~---v~~~e~~~~a~~~----~~~y~E~Sa 144 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ---VSTEEGEKKAKEL----NAMFIETSA 144 (161)
T ss_pred HHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCC---CCHHHHHHHHHHC----CCEEEEECC
T ss_conf 525899998479989999999999999986578984999610211022177---8999999999984----998999834
Q ss_pred EEEEE
Q ss_conf 67641
Q gi|254780263|r 171 LCALQ 175 (392)
Q Consensus 171 ~~g~~ 175 (392)
.++.+
T Consensus 145 k~~~n 149 (161)
T cd01861 145 KAGHN 149 (161)
T ss_pred CCCCC
T ss_conf 77808
No 212
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.74 E-value=2.1e-08 Score=71.20 Aligned_cols=141 Identities=22% Similarity=0.168 Sum_probs=82.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC--CCEEEEEEECCCCHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--378999821--99089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET--DKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~--~~~~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|.-..|||+|+-+++.. ...++ .-.|+ +.....+.. ...++.|.||+|++.|-.-.
T Consensus 5 ~KivlvGd~~VGKTsli~r~~~~------------~f~~~--~~~Tig~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~l~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK------------RFQPV--HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT 70 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCH
T ss_conf 89999998997889999999109------------89998--78985078899999999999999999799973346255
Q ss_pred HHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433-2106778888631---876023310023335612221101232100111014532210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPK-PQTREHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
-.-...+|++|||.|.+.--. ..-.+.+..++.. ++| +|++-||+|+.+..+ ...++.+++.++. +.+
T Consensus 71 ~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~-iiLVGNK~DL~~~r~---V~~~e~~~~a~~~----~~~ 142 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRRE---VSYEEGEAFAKEH----GLI 142 (168)
T ss_pred HHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf 88866436899934458779999999999999986799965-998434235454077---8999999999986----999
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++.+||.++.+
T Consensus 143 ~~E~SAk~~~n 153 (168)
T cd01866 143 FMETSAKTASN 153 (168)
T ss_pred EEEECCCCCCC
T ss_conf 99976788808
No 213
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.73 E-value=2.1e-08 Score=71.13 Aligned_cols=140 Identities=21% Similarity=0.209 Sum_probs=82.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199--08999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|....|||+|+-+++.. ....+...-+.++.....++.++ ..+.|.||+|.+.|-.-.-.
T Consensus 1 ~KIvllGd~~VGKTsli~r~~~~------------~f~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~~~~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDN------------EFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQ 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 98999994998589999999429------------989987887208988999999999999999979996023635588
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 74002331452012344332106778----888631---87602331002333561222110123210011101453221
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
-...+|+++||.|.+. ++|-+++ ..++.. .+| +|++-||.|+.+..+ ...++..++.++. +.
T Consensus 69 y~r~a~~~ilvyDvt~---~~Sf~~l~~w~~~i~~~~~~~~~-~ilVgNK~Dl~~~r~---v~~~~~~~~a~~~----~~ 137 (161)
T cd04117 69 YYRRAQGIFLVYDISS---ERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQ---VGDEQGNKLAKEY----GM 137 (161)
T ss_pred HHHHHCEEEEECCCCC---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCHHHCCC---CCHHHHHHHHHHC----CC
T ss_conf 8764168899614898---89999999999999987899864-999873278786277---9999999999986----99
Q ss_pred ECCCCEEEEEEE
Q ss_conf 023311467641
Q gi|254780263|r 164 PIIRGSALCALQ 175 (392)
Q Consensus 164 pii~~sa~~g~~ 175 (392)
+++.+||.+|.+
T Consensus 138 ~~~etSAk~~~n 149 (161)
T cd04117 138 DFFETSACTNSN 149 (161)
T ss_pred EEEEECCCCCCC
T ss_conf 799967789829
No 214
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.72 E-value=8e-08 Score=67.57 Aligned_cols=116 Identities=20% Similarity=0.185 Sum_probs=74.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|-..+|||||+.+|.+..-. ++....+..+......... ...+.++||+|.++|-.-|-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP------------EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPE 73 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC------------CCCCCCEEECCCCCEEECCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 79999999999889999999647676------------556761454043203622666002676767986999998875
Q ss_pred HHHCCCCEEEEECCCC--CCCCCHHHHHHHHHHC---CCCCEEEEECCCCCCCCHH
Q ss_conf 7400233145201234--4332106778888631---8760233100233356122
Q gi|254780263|r 91 GATQADGAILVCAAED--GPKPQTREHILLARQI---GISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 91 g~~~~D~ailvVda~~--G~~~QT~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~ 141 (392)
-...+++++++.|... ....-+++-...++.+ .++ ++++-||+|+-+...
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~~ 128 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQS 128 (219)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCHH
T ss_conf 0438978999997620565788999999999874668867-999697610554301
No 215
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.72 E-value=4.6e-08 Score=69.06 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=82.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-.--+.++.....+.. ....++|-||+|.+.|-.-.-.
T Consensus 7 ~KIvlvGd~~VGKTSli~r~~~~------------~F~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~l~~~ 74 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADN------------TFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITST 74 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 79999997998889999999509------------999986897555878999999999999999989998123535266
Q ss_pred HHHCCCCEEEEECCCCCCCC-CHHHHHHHH-HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 74002331452012344332-106778888-6318760233100233356122211012321001110145322102331
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKP-QTREHILLA-RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~-QT~eh~~l~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
-...+|++|||.|.+.-..= ....-+..+ ....-.++|++-||+|+.+... . ..++..++.++. +.+++.+
T Consensus 75 ~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~-v--~~~e~~~~a~~~----~~~f~E~ 147 (199)
T cd04110 75 YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKV-V--ETEDAYKFAGQM----GISLFET 147 (199)
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCC-C--CHHHHHHHHHHC----CCEEEEE
T ss_conf 64246542389717988999999999999997599875799988554475469-9--999999999986----9979998
Q ss_pred EEEEEE
Q ss_conf 146764
Q gi|254780263|r 169 SALCAL 174 (392)
Q Consensus 169 sa~~g~ 174 (392)
||.+|.
T Consensus 148 SAktg~ 153 (199)
T cd04110 148 SAKENI 153 (199)
T ss_pred ECCCCC
T ss_conf 689992
No 216
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.71 E-value=5.7e-08 Score=68.46 Aligned_cols=138 Identities=18% Similarity=0.111 Sum_probs=79.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC--CEEEEEEECCCCHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206--3789998219--90899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD--KRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi 89 (392)
.|+++|.-..|||+|+-+++... ..++ .--|| +.....+..+ ..++.|-||+|++.|-.-.-
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~------------f~~~--~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~~~l~~ 67 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE------------FEKK--YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 89999999988899999998399------------9998--687325567999999999799999997578715666878
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH--HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 774002331452012344332106778--88863-187602331002333561222110123210011101453221023
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI--LLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
.-...+|++|||.|.++-..=+.-+.+ .+-+. -.+| +|++-||+|+.+.. +..+..++.++. +.+++
T Consensus 68 ~y~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~p-iilVgNK~Dl~~~~-----~~~~~~~~~~~~----~~~~~ 137 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-----VKAKQITFHRKK----NLQYY 137 (166)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC-----CCHHHHHHHHHC----CCEEE
T ss_conf 874006579984378988899999999999998689998-99999862175036-----679999999978----99899
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
.+||.++.+
T Consensus 138 EtSAk~~~n 146 (166)
T cd00877 138 EISAKSNYN 146 (166)
T ss_pred EECCCCCCC
T ss_conf 984589909
No 217
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.70 E-value=3.9e-08 Score=69.51 Aligned_cols=136 Identities=22% Similarity=0.233 Sum_probs=80.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899---9821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|....|||+|+-+++... ..+| .--|+...+. ....+...+.|.||+|+++|-.-.-
T Consensus 2 ~KvvlvGd~~VGKTsli~r~~~~~------------F~~~--y~~Ti~~~~~k~~~i~~~~~~l~iwDtaG~e~~~~l~~ 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH------------FVDE--YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD 67 (162)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 399998999988999999998392------------8875--68855527999999999999999997998601114789
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH----H-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 774002331452012344332106778----8-8863---1876023310023335612221101232100111014532
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI----L-LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
.-...+|+++||-|.+.- +|-+++ . +.+. -.+| ++++-||+|+.+.+ ...++.+++.++.
T Consensus 68 ~~~~~a~~~ilvydvt~~---~Sf~~v~~w~~~i~~~~~~~~~p-iilVgNK~Dl~~r~----V~~~e~~~~a~~~---- 135 (162)
T cd04138 68 QYMRTGEGFLCVFAINSR---KSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAART----VSSRQGQDLAKSY---- 135 (162)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCE-EEEEEEECCHHHCC----CCHHHHHHHHHHC----
T ss_conf 871578779999617988---99998999999999854888854-99997653564555----8899999999980----
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
+.+++.+||.+|.
T Consensus 136 ~~~f~E~SAk~~~ 148 (162)
T cd04138 136 GIPYIETSAKTRQ 148 (162)
T ss_pred CCEEEEECCCCCC
T ss_conf 9989997389985
No 218
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.70 E-value=7.8e-08 Score=67.64 Aligned_cols=142 Identities=16% Similarity=0.127 Sum_probs=83.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC---CCEEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--378999821---9908999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET---DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~---~~~~i~iiD~PGH~~f~~~ 87 (392)
+.|+++|--.-|||+|+.++...-. .. +.+.-.|+ +.....+.. +...+.|.||+|.+.|-.-
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~----------~f--~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~~l 68 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGA----------VF--PKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC----------CC--CCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHHH
T ss_conf 9999999599588999999997888----------66--88888864578899999978997999999979998400678
Q ss_pred HHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 9877400233145201234433-210677888863--1876023310023335612221101232100111014532210
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPK-PQTREHILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.-.-...+|+++||.|.++-.. ....+-+..++. -.+| +|++-||+|+.+..+ ...++.+++.++. +.+
T Consensus 69 ~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p-~ilVgNK~DL~~~r~---V~~~e~~~~a~~~----~~~ 140 (164)
T cd04101 69 VSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAE---VTDAQAQAFAQAN----QLK 140 (164)
T ss_pred HHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCC---CCHHHHHHHHHHC----CCE
T ss_conf 99997642689999707746689999999999997668986-899987224452455---6999999999988----998
Q ss_pred CCCCEEEEEE
Q ss_conf 2331146764
Q gi|254780263|r 165 IIRGSALCAL 174 (392)
Q Consensus 165 ii~~sa~~g~ 174 (392)
++.+||.+|.
T Consensus 141 ~~E~SAk~g~ 150 (164)
T cd04101 141 FFKTSALRGV 150 (164)
T ss_pred EEEECCCCCC
T ss_conf 9998668890
No 219
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.70 E-value=7.9e-08 Score=67.61 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=96.9
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH---
Q ss_conf 03882799999046898878999999876444200-13126868698629206378999821990899984787302---
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE-YGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD--- 83 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~-~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~--- 83 (392)
-+|+++|+-+.|...+|||+|+.+|.+........ ..-.|-..+. ...++...++|.|+||-.|
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~------------~~~~~~~~l~lwDtPG~gdg~~ 102 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL------------RLSYDGENLVLWDTPGLGDGKD 102 (296)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHH------------HHHCCCCCEEEECCCCCCCCHH
T ss_conf 0368615897437777688999999702673421046688701567------------7412665248843788553202
Q ss_pred ----HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC-CCEEEEECCCCCCCC--HHHHHHC--CCCCCEEE
Q ss_conf ----46779877400233145201234433210677888863187-602331002333561--2221101--23210011
Q gi|254780263|r 84 ----YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGI-SSIVVYMNKVDAVDD--DELLDIS--EYEIRDLL 154 (392)
Q Consensus 84 ----f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi-~~iIv~iNKmD~v~~--~~~~~~i--~~~i~~~l 154 (392)
+-.....=+.-.|..+++++|.+--...-.+.+.-....+. ++++++||-.|+..+ +|.+... ...+++++
T Consensus 103 ~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi 182 (296)
T COG3596 103 KDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFI 182 (296)
T ss_pred HHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 21899999998863224799961477700147799999999860576069997366543655430002599987899999
Q ss_pred EEE------EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 101------453221023311467641144456521233203443102522
Q gi|254780263|r 155 KEH------KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPT 199 (392)
Q Consensus 155 ~~~------~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~ 199 (392)
..- -+.+--|++..+ + ..-|++..|+.++.+.+|.
T Consensus 183 ~~k~~~~~~~~q~V~pV~~~~---~-------r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 183 EEKAEALGRLFQEVKPVVAVS---G-------RLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEC---C-------CCCCCHHHHHHHHHHHCCC
T ss_conf 999999999876317747752---5-------4676689999999986731
No 220
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.69 E-value=3.4e-08 Score=69.91 Aligned_cols=141 Identities=20% Similarity=0.176 Sum_probs=81.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC--CCEEEEEEECCCCHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--378999821--99089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET--DKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~--~~~~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|.-..|||+|+.++... ..+++. .-|+ +.....++. ....+.|-||+|.+.|-.-.
T Consensus 8 ~KivllGd~~VGKTsli~r~~~~------------~f~~~~--~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~l~ 73 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQG------------LFPPGQ--GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT 73 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCH
T ss_conf 89999998997999999999859------------899986--7741247899999999999999999899984445155
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCH-HHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 877400233145201234433210-6778888631---876023310023335612221101232100111014532210
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQT-REHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT-~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
-.-...+|+++||.|.+.-..=+. ++-+..++.. .++ +|++-||+|+.+..+ ...++.+++.++. +.+
T Consensus 74 ~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~-~ilVGNK~DL~~~r~---v~~~~~~~~a~~~----~~~ 145 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERRE---VSQQRAEEFSDAQ----DMY 145 (169)
T ss_pred HHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCE-EEEECCCCCHHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf 77742366459981489888999999999999986898863-897311343454178---8999999999988----999
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++.+||.+|.+
T Consensus 146 ~~E~SAktg~n 156 (169)
T cd04114 146 YLETSAKESDN 156 (169)
T ss_pred EEEECCCCCCC
T ss_conf 99986898808
No 221
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=98.69 E-value=5.8e-08 Score=68.45 Aligned_cols=138 Identities=18% Similarity=0.166 Sum_probs=82.9
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECCC--EEEEEEECCCCHHHHH
Q ss_conf 8279999904689887899999987644420013126868698629206--37899982199--0899984787302467
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETDK--RFYSHIDCPGHADYVK 86 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~~--~~i~iiD~PGH~~f~~ 86 (392)
|.+.|+++|....|||+|+-+++... ..+ ..--|| +.....+..++ ..++|-||+|++.|-.
T Consensus 5 p~~KIvllGd~~VGKTsLi~r~~~~~------------F~~--~y~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~s 70 (209)
T PTZ00132 5 AQFKLILVGDGGVGKTTFVKRHLTGE------------FEK--KYIATLGVEVHPLKFYTNRGKICFNVWDTAGQEKFGG 70 (209)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHCC------------CCC--CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC
T ss_conf 76899999999967899999997199------------699--8777602798999999999999999998999744556
Q ss_pred HHHH-HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 7987-74002331452012344332106778-----88863-18760233100233356122211012321001110145
Q gi|254780263|r 87 NMIT-GATQADGAILVCAAEDGPKPQTREHI-----LLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 87 ~mi~-g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
|.. -...++++|||.|.+. .+|-+++ .+.+. -.+| +|++=||.|+.+.+ . ..++. ++.++.
T Consensus 71 -l~~~yyr~a~~~ilVfDit~---~~SF~~l~~W~~ei~~~~~~ip-ivLVGNK~DL~~r~--V--~~~~~-~~a~~~-- 138 (209)
T PTZ00132 71 -LRDGYYIKGQCAIIMFDVTS---RITYKNVPNWHRDITRVCENIP-IVLVGNKVDVKDRQ--V--KAKQI-TFHRKK-- 138 (209)
T ss_pred -CCCHHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCC--C--CHHHH-HHHHHC--
T ss_conf -65144248988999843788---7899999999999998689987-89997623224135--5--79999-999987--
Q ss_pred EEEEECCCCEEEEEEEC
Q ss_conf 32210233114676411
Q gi|254780263|r 160 SDDTPIIRGSALCALQG 176 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~ 176 (392)
+.+++.+||.+|.+.
T Consensus 139 --~~~f~EtSAKtg~NV 153 (209)
T PTZ00132 139 --NLQYYDISAKSNYNF 153 (209)
T ss_pred --CCEEEEEECCCCCCH
T ss_conf --998999726899397
No 222
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.68 E-value=2.6e-08 Score=70.61 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=81.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378---999821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|.-..|||+|+.++....=. + + .--|+... ...+......+.|.||+|+++|-.-.-
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~~f~--------~----~--y~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--------E----S--YDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRE 67 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--------C----C--CCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 19999899997799999999619389--------8----6--58833315999999999999999982788623334515
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH-----HHHH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 774002331452012344332106778-----8886---31876023310023335612221101232100111014532
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI-----LLAR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
.-...||+++||.|.++- +|-+.+ .+.+ .-.+| ++++-||.|+.+..+. ..++..++.++.+
T Consensus 68 ~~~~~a~~~ilvydvt~~---~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~DL~~~r~v---~~~e~~~~a~~~~--- 137 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSE---ASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG--- 137 (168)
T ss_pred HHHCCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCHHHCCCC---CHHHHHHHHHHCC---
T ss_conf 451268667985368988---89999999999999851788874-8988731461213768---9999999999749---
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
..+++.+||.++.+
T Consensus 138 ~~~~~E~SAk~~~n 151 (168)
T cd04177 138 NVPFYETSARKRTN 151 (168)
T ss_pred CCEEEEECCCCCCC
T ss_conf 97799962487846
No 223
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.67 E-value=1e-07 Score=66.95 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=82.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-E--EECCCEEEEEEECCCCHHHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899-9--82199089998478730246779
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-S--YETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~--~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
++.|+++|....|||+|+-+.+... .+++ ..-||...|. . ...+...+.|.||+|+++|-.-.
T Consensus 1 svKvv~lGd~~VGKTsli~r~~~~~------------f~~~--y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~~~~l~ 66 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNK------------FPSE--YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHH
T ss_conf 9799998999958899999996498------------9998--6786347899999999999999999899974512465
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHH-----HH--HHCCCCCEEEEECCCCCCCCHHHHHHC---------CCCCCE
Q ss_conf 87740023314520123443321067788-----88--631876023310023335612221101---------232100
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHIL-----LA--RQIGISSIVVYMNKVDAVDDDELLDIS---------EYEIRD 152 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~--~~lgi~~iIv~iNKmD~v~~~~~~~~i---------~~~i~~ 152 (392)
-.-...+|+++||-|.++ ++|-+++. .+ ..-++| +|++=||+|+.+..+..+.. .++-++
T Consensus 67 ~~~~~~~~~~ilvydv~d---~~Sf~~i~~~w~~~i~~~~~~~p-~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~ 142 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVS---PSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEK 142 (175)
T ss_pred HHHHHCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 887713888899963798---78899999999999998298998-89999872033566667776440265668999999
Q ss_pred EEEEEEEEEEEECCCCEEEEEEE
Q ss_conf 11101453221023311467641
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g~~ 175 (392)
+-++.+ ..+++.+||.+|.+
T Consensus 143 lA~~~~---~~~y~EtSAk~g~n 162 (175)
T cd01874 143 LARDLK---AVKYVECSALTQKG 162 (175)
T ss_pred HHHHCC---CCEEEECCCCCCCC
T ss_conf 999759---95999913378959
No 224
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.67 E-value=9.2e-08 Score=67.20 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=83.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899---9821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
+.++++|-...|||+|+-++... ..++| .--|+...+. ........+.|.||+|+++|-.-.-
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~------------~f~~~--~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTN------------AFPGE--YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 67 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCHHHHH
T ss_conf 69999899998699999999739------------99998--68837887679999999999999986999724067889
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH------HHH-HHCCCCCEEEEECCCCCCCCHHHHHHCC---------CCCCEE
Q ss_conf 774002331452012344332106778------888-6318760233100233356122211012---------321001
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI------LLA-RQIGISSIVVYMNKVDAVDDDELLDISE---------YEIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~------~l~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~---------~~i~~~ 153 (392)
.-...+|++|||-|.++- +|-+++ .+. ..-++| +|++=||+|+.+..+..+... .+-..+
T Consensus 68 ~~~~~a~~~ilvydi~~~---~SF~~i~~~w~~~i~~~~~~~p-iiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~ 143 (174)
T cd01871 68 LSYPQTDVFLICFSLVSP---ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred HHHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 987406689999867987---8899999999999998588999-798747301310045677886514677589999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEE
Q ss_conf 1101453221023311467641
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~ 175 (392)
-++. ...+++.+||.++.+
T Consensus 144 a~~~---~~~~f~EtSAk~~~n 162 (174)
T cd01871 144 AKEI---GAVKYLECSALTQKG 162 (174)
T ss_pred HHHC---CCCEEEECCCCCCCC
T ss_conf 9875---997899918788959
No 225
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.66 E-value=6e-08 Score=68.34 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=80.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++...-+..+.....+..+ ...+.|.||+|.++|-.-.-.
T Consensus 4 ~Kiv~lGd~~vGKTsli~r~~~~------------~f~~~~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~~ 71 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSG------------TFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQS 71 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHH
T ss_conf 99999999995899999999649------------999987997543789999999999999999989998344535075
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 74002331452012344332106778----888631---87602331002333561222110123210011101453221
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI----LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
-...+|++|||.|.+.- +|-+.+ .-++.. ++| +|++=||+|+.+..+ ...++..++.++.+. .
T Consensus 72 ~~~~a~~~ilvydit~~---~Sf~~~~~w~~~i~~~~~~~~~-iilVGNK~DL~~~r~---V~~~~~~~~a~~~~~---~ 141 (165)
T cd01864 72 YYRSANGAIIAYDITRR---SSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQRE---VLFEEACTLAEKNGM---L 141 (165)
T ss_pred HEECCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHCC---CCHHHHHHHHHHCCC---C
T ss_conf 52215666997138998---9999999999999987699984-388877237686289---999999999998399---7
Q ss_pred ECCCCEEEEEEE
Q ss_conf 023311467641
Q gi|254780263|r 164 PIIRGSALCALQ 175 (392)
Q Consensus 164 pii~~sa~~g~~ 175 (392)
.++.+||.+|.+
T Consensus 142 ~~~E~SAk~~~n 153 (165)
T cd01864 142 AVLETSAKESQN 153 (165)
T ss_pred EEEEECCCCCCC
T ss_conf 699978885819
No 226
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.66 E-value=3.8e-08 Score=69.57 Aligned_cols=141 Identities=21% Similarity=0.185 Sum_probs=81.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC--CCEEEEEEECCCCHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821--9908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET--DKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
|.|+++|-..-|||+|+-++... ...++-...+-++.....+.. ....+.|-||+|++.|-.-.-.
T Consensus 1 lKIvllGd~gVGKTsLi~rf~~~------------~F~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~sl~~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDD------------TFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSA 68 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 98999997997299999999549------------999987997646889999999999999999979886124523578
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH----HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 74002331452012344332106778----88863---187602331002333561222110123210011101453221
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI----LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~----~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
-...|+++|||.|.+.- +|-+++ ..+.. -.++ ++++=||+|+.+.-+ ...++.+++.++.. ..
T Consensus 69 yyr~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~~-iiLVGNK~DL~~~R~---Vs~~e~~~~A~~~~---~~ 138 (202)
T cd04120 69 YYRSAKGIILVYDITKK---ETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDRE---ISRQQGEKFAQQIT---GM 138 (202)
T ss_pred HHHHHCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCHHHCC---CCHHHHHHHHHHCC---CC
T ss_conf 87641445899856888---9999999999999974668871-898765365053178---79999999998279---98
Q ss_pred ECCCCEEEEEEE
Q ss_conf 023311467641
Q gi|254780263|r 164 PIIRGSALCALQ 175 (392)
Q Consensus 164 pii~~sa~~g~~ 175 (392)
+++.+||.++.+
T Consensus 139 ~f~EtSAkt~~n 150 (202)
T cd04120 139 RFCEASAKDNFN 150 (202)
T ss_pred EEEECCCCCCCC
T ss_conf 899925899969
No 227
>pfam00350 Dynamin_N Dynamin family.
Probab=98.66 E-value=1.2e-07 Score=66.43 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=39.3
Q ss_pred CCEEEEEEECCC-------CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH-HHHHCCCCCEEEEECCC
Q ss_conf 990899984787-------3024677987740023314520123443321067788-88631876023310023
Q gi|254780263|r 69 DKRFYSHIDCPG-------HADYVKNMITGATQADGAILVCAAEDGPKPQTREHIL-LARQIGISSIVVYMNKV 134 (392)
Q Consensus 69 ~~~~i~iiD~PG-------H~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~-l~~~lgi~~iIv~iNKm 134 (392)
....++|||||| |++.+.+.+ ..+|+.|.|++|...+..|-.+-+. .+...+-+ .++++||.
T Consensus 99 ~~~~l~lvDtPGl~s~~~~~~~~t~~~i---~~~d~il~V~~a~~~~~~~~~~~l~~~~d~~~~r-~i~V~tk~ 168 (168)
T pfam00350 99 LVPGLTLVDTPGLDSVAVGDQDLTEEYI---KPADIILAVVDANHDLSTSEALFLAREVDPNGKR-TIGVLTKD 168 (168)
T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHH---HHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCE-EEEEECCC
T ss_conf 8888189827986544433699999998---5386699998469516661999999973999983-89998188
No 228
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=1.4e-07 Score=66.12 Aligned_cols=143 Identities=14% Similarity=0.039 Sum_probs=82.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEE--EEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 88279999904689887899999987-644420013126868698629206378--999821990899984787302467
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATA--HVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~--~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
|.-+++.++|....|||+|+.++... ... +...--+..+.. ......+...+.|-||+|++.|..
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~------------~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~~~ 69 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSL------------NAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL 69 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCCCC------------CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHHHH
T ss_conf 508999999999988999999996499986------------66567546618999999899999999985565323556
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH----H-HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 79877400233145201234433210677888----8-631876023310023335612221101232100111014532
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILL----A-RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l----~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
-.-.-...+|+++||-|.++- ++=+++.- . ..-.+| ++++=||.|+.+..+. ...+.+++.++.+..
T Consensus 70 l~~~~~~~ad~~ilVyDit~~---~SF~~i~~~~~~~~~~~~iP-~vlVgNK~DL~~~rqV---~~~e~~~~a~~~~~~- 141 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDP---KSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQR---YEVQPDEFCRKLGLP- 141 (169)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCCCC---CHHHHHHHHHHCCCC-
T ss_conf 658875469889999979987---89999999999700568981-8999886554203754---677699999983999-
Q ss_pred EEECCCCEEEEEE
Q ss_conf 2102331146764
Q gi|254780263|r 162 DTPIIRGSALCAL 174 (392)
Q Consensus 162 ~~pii~~sa~~g~ 174 (392)
+.+.+||.+|.
T Consensus 142 --~~~e~SAktg~ 152 (169)
T cd01892 142 --PPLHFSSKLGD 152 (169)
T ss_pred --CCEEEEEECCC
T ss_conf --66699832798
No 229
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.66 E-value=6.5e-08 Score=68.13 Aligned_cols=152 Identities=17% Similarity=0.145 Sum_probs=84.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEEC--CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 999904689887899999987644420013126868698629206-378999821--99089998478730246779877
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYET--DKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~--~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
|+++|...-|||+|+-+.+... ..++ .--|+ +.....++. ....+.|.||+|.+.|-.-.-.-
T Consensus 2 IvvlGd~~VGKTSLi~rf~~~~------------F~~~--y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG~e~~~~l~~~~ 67 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT------------FEPK--YRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLS 67 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCHHHHHHH
T ss_conf 8999989977999999998598------------9988--8887254188999989979999999787751301455554
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHH--HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 4002331452012344332106778--888631---87602331002333561222110123210011101453221023
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHI--LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~--~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
...+|++|||-|.++--.=+.-+.+ .+.+.. .+| +|++-||+|+...++... .++..++... ..+.+++
T Consensus 68 ~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ip-iilVGNK~Dll~~~R~V~--~~e~~~~a~~---~~~~~f~ 141 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVEL---DWNCGFV 141 (198)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCCCCCCCC--HHHHHHHHHH---CCCCEEE
T ss_conf 158866899961697799999999999999962888982-899987876501047848--9999999985---5997899
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 311467641144456521233203443102
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
.+||.+|.+ +..+++.|...
T Consensus 142 EtSAktg~n----------V~e~F~~l~r~ 161 (198)
T cd04147 142 ETSAKDNEN----------VLEVFKELLRQ 161 (198)
T ss_pred ECCCCCCCC----------HHHHHHHHHHH
T ss_conf 877999949----------89999999999
No 230
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.65 E-value=2.1e-08 Score=71.13 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=59.0
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECH
Q ss_conf 00000013554454301487424534896799950687432125412100-12114432100136664112454322021
Q gi|254780263|r 210 MHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRG 288 (392)
Q Consensus 210 ~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rG 288 (392)
..|+++..++++|.+.+.||.||+|+.|+++.....+......++..++. .+++++++.|||++++. ...+.+.|
T Consensus 3 AlVFK~~~D~~~G~ls~vRVysG~l~~g~~v~n~~~~~~ekv~~l~~~~g~~~~~v~~~~AGdI~av~----gl~~~~tG 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVIT----GLKQTRTG 78 (83)
T ss_pred EEEEEEECCCCCCCEEEEEEEECEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE----CCCCCCCC
T ss_conf 99998650798440999999707897899999688996297308889757993299789699899997----87786038
Q ss_pred HEEEC
Q ss_conf 17732
Q gi|254780263|r 289 RVVCA 293 (392)
Q Consensus 289 dvl~~ 293 (392)
|+||.
T Consensus 79 DTltt 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEECC
T ss_conf 89759
No 231
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.65 E-value=9.8e-08 Score=67.03 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=80.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC-CC--EEEEEEECCCCHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-9821-99--0899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET-DK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~-~~--~~i~iiD~PGH~~f~~~mi 89 (392)
.|+++|...-|||+|+-++... ..+++ ..-|+-..+. .... ++ ..+.|.||+|+++|-.-.-
T Consensus 2 KivlvGd~~VGKTsli~r~~~~------------~F~~~--~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~l~~ 67 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQG------------KFPEE--YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRP 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 8999994997699999999639------------89997--589664799999995499899999996999711053434
Q ss_pred HHHHCCCCEEEEECCCCCCC-CCHHHHH-HHHHH--CCCCCEEEEECCCCCCCCHHHHHHC-CCCCCEEEEEEEEEEEEE
Q ss_conf 77400233145201234433-2106778-88863--1876023310023335612221101-232100111014532210
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-PQTREHI-LLARQ--IGISSIVVYMNKVDAVDDDELLDIS-EYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~QT~eh~-~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i-~~~i~~~l~~~~~~~~~p 164 (392)
.....+|++|||.|.+.-.. ..-.+++ ..++. -.+| +|++-||.|+.+..+....+ .++...+-+..+ ..+
T Consensus 68 ~~~~~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~p-iilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~---~~~ 143 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG---AFA 143 (187)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCC---CCE
T ss_conf 4530034888950368767799999999999998689999-799998722122122376578999999999859---978
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++.+||.++.+
T Consensus 144 y~EtSAk~g~n 154 (187)
T cd04132 144 YLECSAKTMEN 154 (187)
T ss_pred EEEECCCCCCC
T ss_conf 99957688929
No 232
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.64 E-value=1.1e-07 Score=66.73 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=84.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE--EEEECCC--EEEEEEECCCCHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789--9982199--089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH--VSYETDK--RFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~--~~i~iiD~PGH~~f~~~m 88 (392)
+.|+++|....|||+|+-++....- .+. ..--|+...+ ..+..++ ..+.|.||+|.+.|-.-.
T Consensus 1 vKivlvGd~~VGKTsLi~r~~~~~f--------~~~-----~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~~l~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF--------LVG-----PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--------CCC-----CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHH
T ss_conf 9899999699879999999985979--------989-----978763058899999999999999999199973123557
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHH----HHHH--HCCCCCEEEEECCCCCCCCHH-HHHHCCCCCCEEEEEEEEEE
Q ss_conf 8774002331452012344332106778----8886--318760233100233356122-21101232100111014532
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHI----LLAR--QIGISSIVVYMNKVDAVDDDE-LLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~----~l~~--~lgi~~iIv~iNKmD~v~~~~-~~~~i~~~i~~~l~~~~~~~ 161 (392)
-.-...+|++|||.|.++- +|-+.+ ..++ .-.+| ++++-||+|+.+.++ .-+...++..++.++.+
T Consensus 68 ~~y~~~a~~~ilvydit~~---~Sf~~i~~W~~~i~~~~~~~~-iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~--- 140 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDS---SSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK--- 140 (193)
T ss_pred HHHHCCCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCC---
T ss_conf 9883477445788306987---999989999999997489999-799977466322016664468999999999809---
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
.+++.+||.+|.+
T Consensus 141 -~~~~E~SAktg~n 153 (193)
T cd04118 141 -AQHFETSSKTGQN 153 (193)
T ss_pred -CEEEEECCCCCCC
T ss_conf -9699983898939
No 233
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.63 E-value=8.6e-08 Score=67.38 Aligned_cols=151 Identities=18% Similarity=0.132 Sum_probs=85.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|.-..|||+|+-++.... ..++ .--||.-.+. .+..++ ..+.|.||+|+++|-.-.-
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~------------F~~~--y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~l~~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT------------FRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQR 67 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 099998999976999999996496------------9998--68845420558999999999999998999846542324
Q ss_pred HHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH------CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 77400233145201234433-210677888863------18760233100233356122211012321001110145322
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-PQTREHILLARQ------IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~------lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
.-...+|++|||-|.+.-.. ..-+..+..++. -.+| ++++-||+|+.+..+ ...++.+++.++. +
T Consensus 68 ~~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~p-iilVgNK~Dl~~~r~---V~~~e~~~~a~~~----~ 139 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKRE---VSSNEGAACATEW----N 139 (165)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCCCCC---CCHHHHHHHHHHC----C
T ss_conf 4506885799981389878999999999999999615888887-899864246400278---8999999999986----9
Q ss_pred EECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 102331146764114445652123320344310
Q gi|254780263|r 163 TPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 163 ~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
.+++.+||.+|.+ +..+++.|.+
T Consensus 140 ~~~~E~SAk~~~n----------V~e~F~~l~~ 162 (165)
T cd04140 140 CAFMETSAKTNHN----------VQELFQELLN 162 (165)
T ss_pred CEEEEECCCCCCC----------HHHHHHHHHH
T ss_conf 8899974477948----------7999999981
No 234
>KOG1489 consensus
Probab=98.63 E-value=1.4e-07 Score=66.03 Aligned_cols=136 Identities=16% Similarity=0.245 Sum_probs=77.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE-EEEEECCC-----C-----
Q ss_conf 799999046898878999999876444200131268686986292063789998219908-99984787-----3-----
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF-YSHIDCPG-----H----- 81 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~-i~iiD~PG-----H----- 81 (392)
-+++.+|-.+||||||+.+|+....+.+.. ..+--.+ .++. ..++++. |++-|.|| |
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~Y-aFTTL~P---------~iG~--v~yddf~q~tVADiPGiI~GAh~nkGl 264 (366)
T KOG1489 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHY-AFTTLRP---------HIGT--VNYDDFSQITVADIPGIIEGAHMNKGL 264 (366)
T ss_pred CCCCEECCCCCCHHHHHHHHHCCCCCCCCC-CEEEECC---------CCCE--EECCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 554321289886788987764058754554-2034446---------4112--513545146850476534454346765
Q ss_pred -HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH--------HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCE
Q ss_conf -02467798774002331452012344332106778888--------631876023310023335612221101232100
Q gi|254780263|r 82 -ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLA--------RQIGISSIVVYMNKVDAVDDDELLDISEYEIRD 152 (392)
Q Consensus 82 -~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~--------~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~ 152 (392)
-+|+|...| ++.-++|||...+..----++++++ .-+.=++.+|+.||||+.+.++-+ . +++.+
T Consensus 265 G~~FLrHiER----~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~--l-~~L~~ 337 (366)
T KOG1489 265 GYKFLRHIER----CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL--L-SSLAK 337 (366)
T ss_pred CHHHHHHHHH----HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH--H-HHHHH
T ss_conf 4899998875----334899997787555887899999999999986542358538997446736678889--9-99998
Q ss_pred EEEEEEEEEEEECCCCEEEEE
Q ss_conf 111014532210233114676
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g 173 (392)
.|.. ..++|+||.++
T Consensus 338 ~lq~------~~V~pvsA~~~ 352 (366)
T KOG1489 338 RLQN------PHVVPVSAKSG 352 (366)
T ss_pred HCCC------CCEEEEEECCC
T ss_conf 7379------81787640046
No 235
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.63 E-value=2.7e-08 Score=70.53 Aligned_cols=84 Identities=19% Similarity=0.194 Sum_probs=65.9
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCC-CCCEEE
Q ss_conf 1000000013554454301487424534896799950687432125412100121144321001366641124-543220
Q gi|254780263|r 208 FLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGV-NRADVP 286 (392)
Q Consensus 208 ~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi-~~~di~ 286 (392)
||..|.++++++++|.++..||.+|+|++||++.++..+.+....++.-+.....++++..|||. |.-+.|+ +..|++
T Consensus 1 LrALifDS~yD~y~Gvv~~vRV~~G~lk~gd~i~~~~t~~~~~v~evG~~~P~~~~~~~L~aGeV-Gyii~gik~~~d~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQV-GYIIAGIKTVKDAR 79 (86)
T ss_pred CEEEEEEEEECCCCCEEEEEEEECCEECCCCEEEHHHCCCCCEEEEEEECCCCCCCCCEECCCCC-CEEEECCCCCCCCC
T ss_conf 90899986722788789999997999917985223348996385598871799763884947840-48997342015573
Q ss_pred CHHEEE
Q ss_conf 211773
Q gi|254780263|r 287 RGRVVC 292 (392)
Q Consensus 287 rGdvl~ 292 (392)
.||+|+
T Consensus 80 vGDTit 85 (86)
T cd03699 80 VGDTIT 85 (86)
T ss_pred CCCEEE
T ss_conf 447875
No 236
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.62 E-value=1.8e-07 Score=65.39 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=85.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899---982199089998478730246779
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
++.|+++|.-..|||+|+-++.... ..+|- --|+...+. ..+.....+.|.||+|+++|-.-.
T Consensus 3 ~~KivlvGd~~VGKTsli~r~~~~~------------F~~~y--~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~~~~ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA------------FPKEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR 68 (191)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHH
T ss_conf 1899999999989999999997299------------99864--662100046789999999999998588870035677
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHH------HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCC---------CCCE
Q ss_conf 8774002331452012344332106778------88863-187602331002333561222110123---------2100
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHI------LLARQ-IGISSIVVYMNKVDAVDDDELLDISEY---------EIRD 152 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~------~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~---------~i~~ 152 (392)
-.....+|++|||.|-+.- +|-+++ .+... -++| ++++=||.|+.++.+......+ +-..
T Consensus 69 ~~~~~~a~~~ilvfdvt~~---~Sf~~v~~~w~~ei~~~~~~~p-iiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~ 144 (191)
T cd01875 69 TLSYPQTNVFIICFSIASP---SSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred HHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8774478689999857977---8899999999999997096997-89998880102345778887764137556999999
Q ss_pred EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 11101453221023311467641144456521233203443102
Q gi|254780263|r 153 LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 153 ~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
+-++.+ ..+++.+||.++. ++..+++.+...
T Consensus 145 ~a~~~~---~~~y~EtSAkt~~----------nV~e~F~~l~k~ 175 (191)
T cd01875 145 LAKQIH---AVKYLECSALNQD----------GVKEVFAEAVRA 175 (191)
T ss_pred HHHHHC---CCEEEECCCCCCC----------CHHHHHHHHHHH
T ss_conf 999809---9889990689896----------989999999999
No 237
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.62 E-value=6.4e-08 Score=68.18 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=81.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECC--CEEEEEEECCCCHHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789998219--908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETD--KRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi~ 90 (392)
+.|+++|.-..|||+|+.++... ...++-..-+.++........+ ...+.|.||+|.++|-.-.-.
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~------------~f~~~y~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~~l~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD------------SFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTA 69 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 89999999996889999999249------------889976887637879999999999999999969998345544154
Q ss_pred HHHCCCCEEEEECCCCCCC-CCHHHHHHHHHHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 7400233145201234433-2106778888631--876023310023335612221101232100111014532210233
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-PQTREHILLARQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
-...+|+++||.|.+.-.. ....+-+..++.. .-++++++-||.|+.+..+ ...++.+++.++. +.+++.
T Consensus 70 y~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~---v~~~~~~~~a~~~----~~~~~E 142 (165)
T cd01865 70 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERV---VSSERGRQLADQL----GFEFFE 142 (165)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCC---CCHHHHHHHHHHC----CCEEEE
T ss_conf 411354489985178879999999999999986898725999602423555188---9999999999986----997999
Q ss_pred CEEEEEEE
Q ss_conf 11467641
Q gi|254780263|r 168 GSALCALQ 175 (392)
Q Consensus 168 ~sa~~g~~ 175 (392)
+||.++.+
T Consensus 143 ~SAk~~~n 150 (165)
T cd01865 143 ASAKENIN 150 (165)
T ss_pred ECCCCCCC
T ss_conf 76898908
No 238
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.61 E-value=1.2e-07 Score=66.50 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=81.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH----
Q ss_conf 79999904689887899999987644420013126868698--629206378999821990899984787302467----
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEK--LRGITIATAHVSYETDKRFYSHIDCPGHADYVK---- 86 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~--~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~---- 86 (392)
+.|+++|...-|||+|+-+.+.. ...++- .-|...-..........+.+.|.||||...|-.
T Consensus 1 iKivvlG~~gVGKTsli~rf~~~------------~F~~~y~pTig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagq 68 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQ------------EFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQ 68 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCH
T ss_conf 98999997998999999999719------------888874784661678999999999999999958773045556521
Q ss_pred ----HHHHHHHCCCCEEEEECCCCCCCCCHHHHHH-----HH--HHC--CCCCEEEEECCCCCCCCHHHHHHCCCCCCEE
Q ss_conf ----7987740023314520123443321067788-----88--631--8760233100233356122211012321001
Q gi|254780263|r 87 ----NMITGATQADGAILVCAAEDGPKPQTREHIL-----LA--RQI--GISSIVVYMNKVDAVDDDELLDISEYEIRDL 153 (392)
Q Consensus 87 ----~mi~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~--~~l--gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~ 153 (392)
..-+++..+|+++||-|.+.- +|-+++. +. +.. .-+++|++=||.|+.+..+. ..++...+
T Consensus 69 e~~~~r~~~ir~a~~~ilVydvt~~---~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v---~~~~~~~~ 142 (198)
T cd04142 69 EWMDPRFRGLRNSRAFILVYDICSP---DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA---PRHVLSVL 142 (198)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCC---CHHHHHHH
T ss_conf 2355564401468889999988677---88899999999999985147999828998345431003568---89999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEE
Q ss_conf 1101453221023311467641
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~ 175 (392)
.++ .+ +.+++.+||.++.+
T Consensus 143 a~~-~~--~~~f~EtSAK~~~n 161 (198)
T cd04142 143 VRK-SW--KCGYLECSAKYNWH 161 (198)
T ss_pred HHH-CC--CCEEEECCCCCCCC
T ss_conf 985-19--97699887889969
No 239
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.61 E-value=7.7e-08 Score=67.68 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=79.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789---998219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|.-..|||+|+.+++... ..++-. -|+...+ .......+.+.|.||+|+++|..-.-.
T Consensus 3 KIvlvGd~~VGKTsli~r~~~~~------------f~~~y~--~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~~ 68 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGH------------FVESYY--PTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQK 68 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC------------CCCCCC--CCCCCCCCEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 89999989988999999997097------------899858--8124411379999999999999989987010066799
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH--HHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEEC
Q ss_conf 74002331452012344332106778--888631---8760233100233356122211012321001110145322102
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI--LLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPI 165 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pi 165 (392)
-...+|++|||.|.+.-..=+..+.+ .+.+.. .+| ++++-||+|+.+..+ ...++.+++.++.+ .++
T Consensus 69 ~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~p-iilVgNK~DL~~~r~---V~~~e~~~~a~~~~----~~f 140 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQ---VSTEEGKELAESWG----AAF 140 (180)
T ss_pred HHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCHHHCC---CCHHHHHHHHHHCC----CEE
T ss_conf 9863557899974388788999999999999975888886-797765346244078---89999999999839----989
Q ss_pred CCCEEEEEEE
Q ss_conf 3311467641
Q gi|254780263|r 166 IRGSALCALQ 175 (392)
Q Consensus 166 i~~sa~~g~~ 175 (392)
+.+||.+|.+
T Consensus 141 ~EtSAk~g~n 150 (180)
T cd04137 141 LESSARENEN 150 (180)
T ss_pred EEECCCCCCC
T ss_conf 9977688919
No 240
>PRK13768 GTPase; Provisional
Probab=98.61 E-value=2e-07 Score=65.09 Aligned_cols=114 Identities=19% Similarity=0.298 Sum_probs=71.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--C---------------------------------------------
Q ss_conf 99999046898878999999876444200131--2---------------------------------------------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--I--------------------------------------------- 46 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~--------------------------------------------- 46 (392)
-+.++|-..+||||++.++.+.+...++.... +
T Consensus 4 ~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~~ 83 (253)
T PRK13768 4 IVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLLT 83 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999999976997599978986658999988637861789999988198964689999999999
Q ss_pred --CCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC------CHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCHH---
Q ss_conf --6868698629206378999821990899984787------30246779877400--2331452012344332106---
Q gi|254780263|r 47 --DSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG------HADYVKNMITGATQ--ADGAILVCAAEDGPKPQTR--- 113 (392)
Q Consensus 47 --D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG------H~~f~~~mi~g~~~--~D~ailvVda~~G~~~QT~--- 113 (392)
|+..+|.+ ..+..|-|+|||| |.+..+..+..++. --+++.++|+.--..|.+-
T Consensus 84 ~~d~l~~~i~-------------~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~ 150 (253)
T PRK13768 84 KAEEIKEEIE-------------RLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSL 150 (253)
T ss_pred HHHHHHHHHH-------------HCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHH
T ss_conf 8999999985-------------158875998268744322234079999999863686289998450563788799999
Q ss_pred --HHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf --7788886318760233100233356122
Q gi|254780263|r 114 --EHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 114 --eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
-.+.....+++|++. ++||+|+++.+.
T Consensus 151 ~L~a~s~m~~l~lP~in-VlsK~Dll~~~~ 179 (253)
T PRK13768 151 LLLALSVQLRLGLPQIP-VLNKIDLLSEEE 179 (253)
T ss_pred HHHHHHHHHHCCCCEEE-EEEHHHCCCHHH
T ss_conf 99999999973999799-867686278377
No 241
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.61 E-value=1.4e-07 Score=66.12 Aligned_cols=108 Identities=19% Similarity=0.150 Sum_probs=69.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302467798774
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGA 92 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~ 92 (392)
|.|+++|.-.-|||+|+-+.... ..+ | .--||-..+..-.+..+.+.|-||+|+++|-.=.-.-.
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~------------~F~-~--~~~Tig~~~~~k~~~~~~l~IwDTaGqE~f~sl~~~y~ 65 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMER------------RFK-D--TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYC 65 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCC-C--CCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98999999998899999999729------------899-9--88871368999876478899994798622433268885
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC--CCCCEEEEECCCCCCCC
Q ss_conf 002331452012344332106778-----888631--87602331002333561
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHI-----LLARQI--GISSIVVYMNKVDAVDD 139 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l--gi~~iIv~iNKmD~v~~ 139 (392)
..||++|||.|.+. .+|-+++ .+.... .++ +|++=||+|+++.
T Consensus 66 r~a~~~ilvyDit~---~~Sf~~l~~~~~~~~~~~~~~~~-~ilVGNK~DL~~~ 115 (220)
T cd04126 66 RGAAAVILTYDVSN---VQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEE 115 (220)
T ss_pred CCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHCCCCCE-EEEEEECHHCCCC
T ss_conf 67988999997989---89999999999999984799980-8999887121364
No 242
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.60 E-value=7.9e-08 Score=67.61 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=87.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789---99821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|.-.-|||+|+-+++... ..++- --||...+ ...+.+...+.|.||+|++.|-.-.-
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~------------f~~~~--~pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~~~~l~~ 68 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS------------FPDYH--DPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRD 68 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCCC--CCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCHH
T ss_conf 699999999977999999997098------------99875--8842220369999999999999997888513574515
Q ss_pred HHHHCCCCEEEEECCCCCCC-CCHHHHHHHH---H-HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 77400233145201234433-2106778888---6-31876023310023335612221101232100111014532210
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-PQTREHILLA---R-QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~QT~eh~~l~---~-~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.-...+|++|||.|.++-.. ..-.+-...+ + .-.+| ++++-||+|+.+..+ ...++..++-++. +.+
T Consensus 69 ~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p-iilvGNK~DL~~~r~---Vs~~e~~~~a~~~----~~~ 140 (172)
T cd04141 69 QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQ---VTTEEGRNLAREF----NCP 140 (172)
T ss_pred HHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHCC---CCHHHHHHHHHHC----CCE
T ss_conf 56427865688731688889999999999999972889986-899850456676188---8999999999985----997
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 23311467641144456521233203443102
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
++.+||.++.+ +..+++.|...
T Consensus 141 f~EtSAk~~~n----------V~e~F~~l~~~ 162 (172)
T cd04141 141 FFETSAALRHY----------IDDAFHGLVRE 162 (172)
T ss_pred EEEECCCCCCC----------HHHHHHHHHHH
T ss_conf 99974788828----------89999999999
No 243
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.59 E-value=1.8e-07 Score=65.46 Aligned_cols=140 Identities=21% Similarity=0.167 Sum_probs=79.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789-9982199--08999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|.-..|||+|+-++... ..+++ .--|+...+ ..+..++ ..+.|.||+|+++|-.-.-.
T Consensus 3 Ki~liGd~~VGKTsli~r~~~~------------~F~~~--y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~~~~~ 68 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKD------------QFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL 68 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 9999998996699999999709------------89998--478436899999999999999999977766132324044
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHH--CCCCCEEEEECCCCCCCCHHHHHH---------CCCCCCEEE
Q ss_conf 74002331452012344332106778-----88863--187602331002333561222110---------123210011
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQ--IGISSIVVYMNKVDAVDDDELLDI---------SEYEIRDLL 154 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~---------i~~~i~~~l 154 (392)
-...+|++|||-|.++- +|-+++ ..++. -++| +|++-||+|+.+..+.... ..++-.++.
T Consensus 69 ~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~i~~~~~~~p-iilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a 144 (175)
T cd01870 69 SYPDTDVILMCFSIDSP---DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred HHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 31488789999865987---9999999999999997298998-9999872433433234566654025566899999999
Q ss_pred EEEEEEEEEECCCCEEEEEE
Q ss_conf 10145322102331146764
Q gi|254780263|r 155 KEHKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 155 ~~~~~~~~~pii~~sa~~g~ 174 (392)
++.+ ..+++.+||.++.
T Consensus 145 ~~~~---~~~f~EtSAk~~~ 161 (175)
T cd01870 145 NKIG---AFGYMECSAKTKE 161 (175)
T ss_pred HHCC---CCEEEEECCCCCC
T ss_conf 9749---9789997689997
No 244
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.59 E-value=1.1e-07 Score=66.63 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=81.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHH-H
Q ss_conf 9999046898878999999876444200131268686986292063789---99821990899984787302467798-7
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMI-T 90 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi-~ 90 (392)
|+++|--..|||+|+-+.... ..+++- --|+...+ ..+......+.|.||+|+++|- +|. .
T Consensus 1 ivllGd~~VGKTsli~r~~~~------------~f~~~y--~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~~~-~l~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTN------------AFPEDY--VPTVFENYSADVEVDGKPVELGLWDTAGQEDYD-RLRPL 65 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC-CCCHH
T ss_conf 599897897599999999539------------899985--785057899999999999999999489870345-45001
Q ss_pred HHHCCCCEEEEECCCCC-CCCCHHHHH-HHHH--HCCCCCEEEEECCCCCCCCHHHHHHC---------CCCCCEEEEEE
Q ss_conf 74002331452012344-332106778-8886--31876023310023335612221101---------23210011101
Q gi|254780263|r 91 GATQADGAILVCAAEDG-PKPQTREHI-LLAR--QIGISSIVVYMNKVDAVDDDELLDIS---------EYEIRDLLKEH 157 (392)
Q Consensus 91 g~~~~D~ailvVda~~G-~~~QT~eh~-~l~~--~lgi~~iIv~iNKmD~v~~~~~~~~i---------~~~i~~~l~~~ 157 (392)
....+|++|||-|.++- -+..-++.+ ..++ .-.+| +|++-||+|+.+........ .++.+.+-++.
T Consensus 66 ~~~~a~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~ 144 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 104886899997589878999999989999998688986-9999875425012333545533146500299999999983
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 45322102331146764114445652123320344310
Q gi|254780263|r 158 KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
+ ..+++.+||.+|. ++..+++.+..
T Consensus 145 ~---~~~y~EtSAk~g~----------nV~e~F~~l~r 169 (174)
T smart00174 145 G---AVKYLECSALTQE----------GVREVFEEAIR 169 (174)
T ss_pred C---CCEEEEECCCCCC----------CHHHHHHHHHH
T ss_conf 9---9789996458894----------98999999999
No 245
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.58 E-value=1.6e-07 Score=65.74 Aligned_cols=141 Identities=16% Similarity=0.201 Sum_probs=81.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-9821--990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|.-..|||+|+.+++... ..++ .--|+...+. .+.. +...+.|.||+|++.|-.-.-
T Consensus 2 fKIvllGd~~VGKTsli~r~~~~~------------f~~~--y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~l~~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI------------FVEK--YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD 67 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCEEEEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 299998999975999999997092------------8865--68840468999999999999998514775432456788
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH--HHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 774002331452012344332106778--88863---1876023310023335612221101232100111014532210
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI--LLARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~--~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.-...||++|||-|.+.-..=+..+.+ .+.+. -.+| +|++-||+|+.+..+ ...++.+++.++. +.+
T Consensus 68 ~y~~~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~DL~~~r~---V~~~~~~~~a~~~----~~~ 139 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERV---VGKEQGQNLARQW----GCA 139 (164)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEECCCCCHHCCC---CCHHHHHHHHHHC----CCE
T ss_conf 87357868999960787778999999999999862899963-998521457222068---9999999999985----999
Q ss_pred CCCCEEEEEEE
Q ss_conf 23311467641
Q gi|254780263|r 165 IIRGSALCALQ 175 (392)
Q Consensus 165 ii~~sa~~g~~ 175 (392)
++.+||.+|.+
T Consensus 140 ~~E~SAk~~~n 150 (164)
T cd04175 140 FLETSAKAKIN 150 (164)
T ss_pred EEEECCCCCCC
T ss_conf 99966898817
No 246
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.57 E-value=1.7e-07 Score=65.56 Aligned_cols=145 Identities=19% Similarity=0.123 Sum_probs=80.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEE--CCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-982--1990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYE--TDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~--~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|.|+++|....|||+|+-++... ..++|- --|+...+. .+. .....+.|.||+|+++|-.-.-
T Consensus 1 iKvvlvGd~~VGKTsli~r~~~~------------~F~~~y--~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~l~~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN------------GYPTEY--VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 98999998997889999999619------------999985--7835899999999999999999998998734434567
Q ss_pred HHHHCCCCEEEEECCCCCCCCCH-HHHHH-HHH--HCCCCCEEEEECCCCCCCCHHHHH---------HCCCCCCEEEEE
Q ss_conf 77400233145201234433210-67788-886--318760233100233356122211---------012321001110
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQT-REHIL-LAR--QIGISSIVVYMNKVDAVDDDELLD---------ISEYEIRDLLKE 156 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT-~eh~~-l~~--~lgi~~iIv~iNKmD~v~~~~~~~---------~i~~~i~~~l~~ 156 (392)
.....+|++|||-|.+.-..=+- ++++. .++ .-++| +|++=||.|+.+...... ...++-+++-++
T Consensus 67 ~~~~~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~p-iilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~ 145 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 6613787899999659878899999999999996098998-899988701100133554443325755789999999998
Q ss_pred EEEEEEEECCCCEEEEEEE
Q ss_conf 1453221023311467641
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~ 175 (392)
.+ ..+++.+||.++.+
T Consensus 146 ~~---~~~y~EtSAkt~~n 161 (173)
T cd04130 146 IG---ACEYIECSALTQKN 161 (173)
T ss_pred CC---CCEEEEECCCCCCC
T ss_conf 49---96899968688969
No 247
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.56 E-value=2.4e-07 Score=64.61 Aligned_cols=155 Identities=21% Similarity=0.194 Sum_probs=84.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE---EEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789---99821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH---VSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~---~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
+.++++|.-.-|||+|+-+.... ..+++- --|+...| .........+.|.||+|+++|-.-.-
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~------------~F~~~~--~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~~l~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSN------------KFPTDY--IPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP 67 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 79999899997799999999659------------899986--7853589999999999899999997999765424689
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHH-HHHHHH--CCCCCEEEEECCCCCCCCHHHH-H------HCCCCCCEEEEEEE
Q ss_conf 774002331452012344-33210677-888863--1876023310023335612221-1------01232100111014
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREH-ILLARQ--IGISSIVVYMNKVDAVDDDELL-D------ISEYEIRDLLKEHK 158 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh-~~l~~~--lgi~~iIv~iNKmD~v~~~~~~-~------~i~~~i~~~l~~~~ 158 (392)
.-...+|+++||-|-..- -+..-.++ +..++. -++| +|++-||+|+.+..+.. + ....+-.++-++.+
T Consensus 68 ~~y~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~p-iilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~ 146 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG 146 (176)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf 8726787579999789878999999999999998684998-899998632021222333302467777999999999779
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 5322102331146764114445652123320344310
Q gi|254780263|r 159 YSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
. ..++.+||.++.+ +..+++.+..
T Consensus 147 ~---~~y~EtSAk~~~n----------V~e~F~~~~~ 170 (176)
T cd04133 147 A---AAYIECSSKTQQN----------VKAVFDAAIK 170 (176)
T ss_pred C---CEEEEECCCCCCC----------HHHHHHHHHH
T ss_conf 9---7899947898809----------8999999999
No 248
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.55 E-value=2.3e-07 Score=64.72 Aligned_cols=136 Identities=23% Similarity=0.244 Sum_probs=80.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEEC--CCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 99990468988789999998764442001312686869862920637899-9821--99089998478730246779877
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYET--DKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~--~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
|+++|...-|||+|+-++... ...++ ---||...+. .+.. ....+.|.||+|++.|..-.-.-
T Consensus 2 ivviGd~gVGKTsli~r~~~~------------~F~~~--y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~l~~~~ 67 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLN------------HFVET--YDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQW 67 (190)
T ss_pred EEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHHHHHHHH
T ss_conf 899998998789999999629------------79988--6997247889999999999999999899973116788998
Q ss_pred HHCCCCEEEEECCCCCCCCCHHHHHH-----H--HHH--C-CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 40023314520123443321067788-----8--863--1-876023310023335612221101232100111014532
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQTREHIL-----L--ARQ--I-GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT~eh~~-----l--~~~--l-gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
...+|++|||.|.++- +|-+++. + .+. . .+| ++++=||+|+.+..+ ...++.+++..+.
T Consensus 68 ~r~a~~~ilVydvtd~---~SF~~l~~w~~~i~~~~~~~~~~~p-iiLVGNK~Dl~~~r~---V~~~e~~~~a~~~---- 136 (190)
T cd04144 68 IREGEGFILVYSITSR---STFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYERE---VSTEEGAALARRL---- 136 (190)
T ss_pred HCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHHCCCCCCE-EEECCCCCCHHHCCC---CCHHHHHHHHHHC----
T ss_conf 2367658999727977---8999999999999998533799952-895145535033057---8999999999980----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
+.+++.+||.++.+
T Consensus 137 ~~~~~E~SAk~~~n 150 (190)
T cd04144 137 GCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899973588809
No 249
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.52 E-value=3.2e-07 Score=63.81 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=80.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE-EEEEEEECC--CEEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063-789998219--90899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA-TAHVSYETD--KRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~--~~~i~iiD~PGH~~f~~~mi 89 (392)
..|+++|....|||+|+-+++... ..++ .--|+. .-...+..+ ...+.|.||+|+++|-.-.-
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~------------f~~~--y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~~~~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI------------FVEK--YDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD 67 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHHHHHH
T ss_conf 199998999988999999997195------------9886--69954206999999999999998645765445556789
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 7740023314520123443321067788-----8863---1876023310023335612221101232100111014532
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHIL-----LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
.-...||+++||.|.++ ++|-+++. +.+. -.+| ++++-||+|+.+..+ ...++..++.++.
T Consensus 68 ~y~~~a~~~ilvydvt~---~~Sf~~l~~~~~~i~~~~~~~~~p-iilVGnK~Dl~~~r~---v~~~~~~~~a~~~---- 136 (163)
T cd04136 68 LYIKNGQGFVLVYSITS---QSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERV---VSREEGQALARQW---- 136 (163)
T ss_pred HHHCCCCEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCHHHHCC---CCHHHHHHHHHHC----
T ss_conf 88346876999704898---899999999999999861888886-787623547264078---9999999999984----
Q ss_pred EEECCCCEEEEEEE
Q ss_conf 21023311467641
Q gi|254780263|r 162 DTPIIRGSALCALQ 175 (392)
Q Consensus 162 ~~pii~~sa~~g~~ 175 (392)
+.+++.+||.++.+
T Consensus 137 ~~~~~E~SAk~~~n 150 (163)
T cd04136 137 GCPFYETSAKSKIN 150 (163)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899974487805
No 250
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.52 E-value=3.5e-07 Score=63.63 Aligned_cols=109 Identities=22% Similarity=0.281 Sum_probs=64.9
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCC-------------------------------------------------CC
Q ss_conf 99046898878999999876444200131-------------------------------------------------26
Q gi|254780263|r 17 TIGHVDHGKTTLTAAITKYYSEEKKEYGD-------------------------------------------------ID 47 (392)
Q Consensus 17 ~iGhvd~GKSTL~~~L~~~~~~~~~~~~~-------------------------------------------------~D 47 (392)
|+|-..+||||+++++.+.+...++.... +|
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~d 80 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITLD 80 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977997599978986658999877717874679999998298973899999999999999
Q ss_pred CCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC------CHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCHHHH-----
Q ss_conf 868698629206378999821990899984787------30246779877400-233145201234433210677-----
Q gi|254780263|r 48 SAPEEKLRGITIATAHVSYETDKRFYSHIDCPG------HADYVKNMITGATQ-ADGAILVCAAEDGPKPQTREH----- 115 (392)
Q Consensus 48 ~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG------H~~f~~~mi~g~~~-~D~ailvVda~~G~~~QT~eh----- 115 (392)
|..++. + ....|-++|||| |.+-++..+..++. .=+++.++|+.--..+.+--.
T Consensus 81 ~l~~~l-------------~-~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~v~l~D~~~~~d~~~fis~~L~a 146 (234)
T pfam03029 81 WLLEEL-------------E-YEDDYYLFDTPGQIELFTHWDSLARGVEALEASRLGAVYLVDTRRLTDPIDFFSGLLYA 146 (234)
T ss_pred HHHHHH-------------C-CCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHHHHHHHHH
T ss_conf 999985-------------2-55776998369835765400269999999712873899984257746888899999999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 8888631876023310023335612
Q gi|254780263|r 116 ILLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 116 ~~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
+.....+++|++ .++||+|+++.+
T Consensus 147 ~s~m~~l~lP~v-nvlsK~Dl~~~~ 170 (234)
T pfam03029 147 LSIMLRLGLPFV-VALNKFDLLSLE 170 (234)
T ss_pred HHHHHHCCCCEE-EEECCHHCCCCH
T ss_conf 999997489944-310004135424
No 251
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.51 E-value=6.5e-08 Score=68.14 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCC-CCCCCCCCCCCHHHHHHHCCCCCCEEECHHE
Q ss_conf 000013554454301487424534896799950687432125412100-1211443210013666411245432202117
Q gi|254780263|r 212 IEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM-FRKKLDEAIAGDNVGLLLRGVNRADVPRGRV 290 (392)
Q Consensus 212 I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~-~~~~v~~a~aGd~v~l~Lkgi~~~di~rGdv 290 (392)
++.+...++ |.+.+-||+||+|+.|++++....+.+....++..++. .++++++|.|||++++. |+ +...||+
T Consensus 5 vFK~~~d~~-G~lsf~RVysG~l~~g~~v~n~~~~~~eri~~l~~~~~~~~~~v~~a~aGDIvav~--gl---~~~tGDT 78 (81)
T cd04091 5 AFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI---DCASGDT 78 (81)
T ss_pred EEEEECCCC-CCEEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCEECCEECCCCEEEEE--CC---CCCCCCC
T ss_conf 998761899-88999999672887999999786891687202289978985076568799899998--99---9674776
Q ss_pred EEC
Q ss_conf 732
Q gi|254780263|r 291 VCA 293 (392)
Q Consensus 291 l~~ 293 (392)
||+
T Consensus 79 L~d 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred CCC
T ss_conf 359
No 252
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.50 E-value=1.2e-07 Score=66.43 Aligned_cols=169 Identities=18% Similarity=0.281 Sum_probs=99.8
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE-EEEEEECCC-EEEEEEECCCC---
Q ss_conf 1038827999990468988789999998764442001312686869862920637-899982199-08999847873---
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT-AHVSYETDK-RFYSHIDCPGH--- 81 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~-~~~~~~~~~-~~i~iiD~PGH--- 81 (392)
.-++..+|||+.|--.+||||++.+|-+ .+.+..+.+.+ |.+-.. ....|..++ -+++|-|.||-
T Consensus 30 ~~~~~~lnIavtGesG~GkSsfINalRg-~g~e~~~aA~t---------GvvetT~~~~~Y~hp~~pnV~lwDLPG~gt~ 99 (375)
T pfam05049 30 EISSAPLKIAVTGDSGNGKSSFINALRG-IGHEEDGSAPT---------GVVETTMKRTPYSHPHFPNVVLWDLPGLGAT 99 (375)
T ss_pred HHHCCCEEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCCC---------CCEEECCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 5443824799854899867899998747-89877776876---------8766326755678999998079628999989
Q ss_pred ----HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCC------------CCCHHH
Q ss_conf ----02467798774002331452012344332106778888---63187602331002333------------561222
Q gi|254780263|r 82 ----ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDA------------VDDDEL 142 (392)
Q Consensus 82 ----~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~------------v~~~~~ 142 (392)
.+|+..| .....|.-|++.+.+- +.-|+.+| +.+| +++-++=+|+|. .+.++.
T Consensus 100 ~f~~~~Yl~~~--~f~~yDfFiiiss~rf-----~~n~v~LAk~i~~mg-K~fyfVrtKvD~Dl~~e~~~kp~~F~~e~~ 171 (375)
T pfam05049 100 NFTVETYLEEM--KFSEYDFFIIISSERF-----SLNDVKLAKAIQRMG-KRFYFVRTKLDSDLSNEQKGKPQTFPKEKV 171 (375)
T ss_pred CCCHHHHHHHC--CCCCCCEEEEEECCCC-----CHHHHHHHHHHHHHC-CCEEEEEEECCCCCHHHHHCCCCCCCHHHH
T ss_conf 98989999874--8564778999967754-----320189999999838-947999862367606576258999998999
Q ss_pred HHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 110123210011101453221023311467641144456521233203443102522221
Q gi|254780263|r 143 LDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQR 202 (392)
Q Consensus 143 ~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~~ 202 (392)
.+.|.+.+.+-|.+.+.. +.|++-+| |-....|+-+.|.+.+..-+|.-.|
T Consensus 172 Lq~IR~~c~~~L~k~gv~-eP~VFLvS--------nfdl~~yDFp~L~~TL~~eLP~hKR 222 (375)
T pfam05049 172 LQNIQDNCRNNLQKEGVK-EPPIFLVS--------NLDPSHYDFPKLRDTLLKDLPIIKR 222 (375)
T ss_pred HHHHHHHHHHHHHHCCCC-CCCEEEEE--------CCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999999875888-99789981--------7881326818999999987368678
No 253
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.48 E-value=8.4e-08 Score=67.44 Aligned_cols=91 Identities=25% Similarity=0.379 Sum_probs=68.7
Q ss_pred CCCCCCEECCCCCCCCC--------CCCCEEEEEEECCCCCCCEEEEEECC---------CCCCCEEEECCCCCCCCCCC
Q ss_conf 00011000000013554--------45430148742453489679995068---------74321254121001211443
Q gi|254780263|r 204 LDAPFLMHIEGSCGIEG--------RGTVVTGCIKRGRIKAGSDVEIIGMG---------GKKLKVKCTDVEMFRKKLDE 266 (392)
Q Consensus 204 ~~~p~r~~I~~vf~i~g--------~G~Vv~GrV~sG~l~~Gd~i~i~p~~---------~~~~~~kv~si~~~~~~v~~ 266 (392)
.++|.+|.|.+.|.+.- .|-|+.|.+.+|.|++||++.|.|.- .....++|.||+..+.++++
T Consensus 2 ~~~~P~m~V~RSFDvNkPGt~~~~L~GGViGGSl~~G~lkvgDeIEIrPG~~~~~~~~~~~~Pi~t~I~sl~a~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCCEEEEEEEEECCCCCCCHHHCCEEEEEEEEEEEEEECCCEEEECCCEEEEECCEEEEEEEEEEEEEEEECCEEEEE
T ss_conf 98995499998864268999878853008989987879957999997489898739979999899999999929842428
Q ss_pred CCCCHHHHHHHC---CCCCCEEECHHEEECC
Q ss_conf 210013666411---2454322021177326
Q gi|254780263|r 267 AIAGDNVGLLLR---GVNRADVPRGRVVCAP 294 (392)
Q Consensus 267 a~aGd~v~l~Lk---gi~~~di~rGdvl~~~ 294 (392)
|.||-.+|+..+ .+.+.|--.|.|+..+
T Consensus 82 a~PGGLigvgT~LDPsltk~D~L~G~V~G~~ 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred ECCCCEEEECCCCCCHHCCCCCCEEEECCCC
T ss_conf 8378578971664813513654247761468
No 254
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.46 E-value=4.2e-07 Score=63.13 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=80.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-E--EECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-9--821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-S--YETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~--~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
+.|+++|.-..|||+|+-++.... .++| .--|+.-.+. . ...+...+.|.||+|+++|-.-.-
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~------------f~~~--y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~~~~~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA------------FPEE--YVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf 989999989985999999996298------------9988--68857520227999999999999997976403155659
Q ss_pred HHHHCCCCEEEEECCCC-CCCCCHHHHH-HHHHH--CCCCCEEEEECCCCCCCCHHHHH---------HCCCCCCEEEEE
Q ss_conf 77400233145201234-4332106778-88863--18760233100233356122211---------012321001110
Q gi|254780263|r 90 TGATQADGAILVCAAED-GPKPQTREHI-LLARQ--IGISSIVVYMNKVDAVDDDELLD---------ISEYEIRDLLKE 156 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~-G~~~QT~eh~-~l~~~--lgi~~iIv~iNKmD~v~~~~~~~---------~i~~~i~~~l~~ 156 (392)
.....+|+++||-|.++ --+...++.+ ..++. -.+| +|++=||+|+.+...... ...++-.++-++
T Consensus 67 ~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~p-iilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~ 145 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 9855787678984379778899999999999998684998-899968523004434554530045766399999999997
Q ss_pred EEEEEEEECCCCEEEEEE
Q ss_conf 145322102331146764
Q gi|254780263|r 157 HKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~ 174 (392)
.+. .+++.+||.++.
T Consensus 146 ~g~---~~f~E~SAkt~~ 160 (174)
T cd04135 146 IGA---HCYVECSALTQK 160 (174)
T ss_pred CCC---CEEEEECCCCCC
T ss_conf 799---899990548794
No 255
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.46 E-value=7.3e-07 Score=61.64 Aligned_cols=147 Identities=14% Similarity=0.072 Sum_probs=79.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EE--ECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-98--219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SY--ETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~--~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|...-|||+|+-++... ..+++ .--||...+. .. .-....+.|.||+|+++|-.-.-.
T Consensus 2 KivlvGd~~VGKTsli~r~~~~------------~F~~~--y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~i~~~ 67 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRG------------YFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL 67 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHH
T ss_conf 8999997997699999999709------------99998--688378999999999999999999847785000035567
Q ss_pred HHHCCCCEEEEECCCCCC-CCC--HHHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEE---EEEE---
Q ss_conf 740023314520123443-321--0677888863-18760233100233356122211012321001110---1453---
Q gi|254780263|r 91 GATQADGAILVCAAEDGP-KPQ--TREHILLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKE---HKYS--- 160 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~-~~Q--T~eh~~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~---~~~~--- 160 (392)
-...+|+++||.|.+.-. +.. ++..-.+-.. -++| +|++-||+|+.+..+..+.........+.. ..+.
T Consensus 68 ~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~ 146 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 643786459999789878999999999999997497997-8999988004653235677766304665899999999982
Q ss_pred EEEECCCCEEEEEEE
Q ss_conf 221023311467641
Q gi|254780263|r 161 DDTPIIRGSALCALQ 175 (392)
Q Consensus 161 ~~~pii~~sa~~g~~ 175 (392)
...+++.+||.++.+
T Consensus 147 ~~~~y~EtSAkt~~n 161 (189)
T cd04134 147 NALRYLECSAKLNRG 161 (189)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 997899968067949
No 256
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.46 E-value=3.8e-07 Score=63.39 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=85.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECCCCHHHHHHHH-H
Q ss_conf 999904689887899999987644420013126868698629206378---999821990899984787302467798-7
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCPGHADYVKNMI-T 90 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~PGH~~f~~~mi-~ 90 (392)
|+++|.-.-|||+|+.++....-. ...+ -|+... ....+.+...+.|.||+|.+.|...+. +
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~f~-----~~y~---------~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~~~~~~ 67 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKRFI-----GEYD---------PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLER 67 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC-----CCCC---------CCCCCEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHH
T ss_conf 999998997789999999749899-----8759---------95563057999999999999999289850122012554
Q ss_pred HHHCCCCEEEEECCCCCCCCCHH----HHHHHHHH--CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 74002331452012344332106----77888863--1876023310023335612221101232100111014532210
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTR----EHILLARQ--IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~----eh~~l~~~--lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
=...||++|||-|.+.-..=+.- +.+.-.+. -.+| +|++=||+|+.+.-+ ...++.+++.++. +.+
T Consensus 68 ~~~~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~p-iilVGNK~DL~~~r~---Vs~ee~~~~a~~~----~~~ 139 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ---VSTEEGEKLASEL----GCL 139 (165)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCCCCC---CCHHHHHHHHHHC----CCE
T ss_conf 30458789999865888999999999999999846699953-998445545210367---7999999999981----998
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 233114676411444565212332034431
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVD 194 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~ 194 (392)
++.+||.++.+ ++..+++.+.
T Consensus 140 f~E~SAk~~~~---------~V~~~F~~l~ 160 (165)
T cd04146 140 FFEVSAAEDYD---------GVHSVFHELC 160 (165)
T ss_pred EEEEECCCCCC---------CHHHHHHHHH
T ss_conf 99975208782---------6999999999
No 257
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.45 E-value=3.6e-07 Score=63.54 Aligned_cols=140 Identities=19% Similarity=0.164 Sum_probs=83.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECC---CEEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206--3789998219---908999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETD---KRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~---~~~i~iiD~PGH~~f~~~ 87 (392)
..|+++|--.-|||+|+-+++.. ...++- --|| +.....++.+ ...+.|.||+|.+.|-.-
T Consensus 3 fKivllGd~~VGKTsL~~rf~~~------------~F~~~~--~~Tig~df~~k~i~i~dg~~v~l~IwDTaGqe~~~si 68 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEG------------RFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI 68 (211)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCCC--CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
T ss_conf 99999999996199999999819------------999986--8720168899899977995999999979886345644
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHH-----HHHHCC--CCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 987740023314520123443321067788-----886318--7602331002333561222110123210011101453
Q gi|254780263|r 88 MITGATQADGAILVCAAEDGPKPQTREHIL-----LARQIG--ISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G~~~QT~eh~~-----l~~~lg--i~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
.-.-...++++|||.|.+.- +|-+++. +....+ -+.++++=||.|+.+.-+ ...++.+++-++.
T Consensus 69 ~~~yyr~a~g~ilVyDvt~~---~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~---Vs~ee~~~~A~~~--- 139 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNR---ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ---VTREEAEKLAKDL--- 139 (211)
T ss_pred HHHHHHHCCEEEEEECCCCH---HHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCC---CCHHHHHHHHHHH---
T ss_conf 28774212446897147777---99999999999999974988853898874231285678---8999999999983---
Q ss_pred EEEECCCCEEEEEEEC
Q ss_conf 2210233114676411
Q gi|254780263|r 161 DDTPIIRGSALCALQG 176 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~ 176 (392)
+.+++.+||.+|.+.
T Consensus 140 -~~~f~EtSAK~g~nV 154 (211)
T cd04111 140 -GMKYIETSARTGDNV 154 (211)
T ss_pred -CCEEEEECCCCCCCH
T ss_conf -997999759998198
No 258
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=98.41 E-value=2.8e-06 Score=58.01 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=69.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|+++|.-..|||||+.++....-... ... -..+.+..........+...+.|.|++|+..|-.---.-.+.
T Consensus 2 ivvvG~~~vGKTSLi~r~~~~~f~~~--------~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~ 72 (118)
T pfam08477 2 VVVIGDKGSGKSSLLSQLVGGEFPPE--------IPE-EIQGDTLAVDTLEVDGDTELLHIWDFGGREELKFEHIIFMKT 72 (118)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCC--------CCC-CCCCCEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCC
T ss_conf 99999899789999999983988876--------667-877776888999999928999999899967776666542258
Q ss_pred CCCEEEEECCCCCCCCCHHHH----HHHHHH--CCCCCEEEEECCCC
Q ss_conf 233145201234433210677----888863--18760233100233
Q gi|254780263|r 95 ADGAILVCAAEDGPKPQTREH----ILLARQ--IGISSIVVYMNKVD 135 (392)
Q Consensus 95 ~D~ailvVda~~G~~~QT~eh----~~l~~~--lgi~~iIv~iNKmD 135 (392)
+|+++||.|.+.-..=+.-+. +.-++. ..+| +|++=||.|
T Consensus 73 ~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~p-iilVGnK~D 118 (118)
T pfam08477 73 ADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIP-VILVGNKFD 118 (118)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC-EEEEEECCC
T ss_conf 7467899979987899999999999999982099998-899996859
No 259
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.41 E-value=5.6e-07 Score=62.32 Aligned_cols=171 Identities=18% Similarity=0.142 Sum_probs=94.1
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC---------------CCCHHH---HHCCCEEEEEEE----
Q ss_conf 1038827999990468988789999998764442001312---------------686869---862920637899----
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI---------------DSAPEE---KLRGITIATAHV---- 64 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~---------------D~~~~E---~~rGiTi~~~~~---- 64 (392)
.+......|++-|-..+|||||+++|...+.+.+..-+.+ |+...+ +..+.=|-+..+
T Consensus 24 ~~~g~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~l 103 (267)
T pfam03308 24 PLTGRAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGAL 103 (267)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 43599559987689988799999999999996898689999789998888630010777765058998588645778888
Q ss_pred ------------EEECCCEEEEEEECCCCHHHHHHH-HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf ------------982199089998478730246779-8774002331452012344332106778888631876023310
Q gi|254780263|r 65 ------------SYETDKRFYSHIDCPGHADYVKNM-ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYM 131 (392)
Q Consensus 65 ------------~~~~~~~~i~iiD~PGH~~f~~~m-i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~i 131 (392)
-++.-++-+.||-|-|= +.- +.-+..+|..+||.-...|-+=|. ..+-.+-+.-++ +|
T Consensus 104 GGls~~t~~~i~lleaaGfD~IivETVGV----GQsE~~v~~~aD~~llv~~Pg~GDeiQ~----iKaGImEiaDi~-vV 174 (267)
T pfam03308 104 GGLSRATREAILLLDAAGFDVIIIETVGV----GQSEVDIANMADTFVLVTIPGGGDDLQG----IKAGLMEIADIY-VV 174 (267)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEECCCC----CCCCHHHHHHCCEEEEEECCCCCHHHHH----HHHHHHHHCCEE-EE
T ss_conf 87147699999999977999999924777----7530355541576899955887608889----875376535489-99
Q ss_pred CCCCCCCCHHHHHHCCCCCCEEEEE--EEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 0233356122211012321001110--145322102331146764114445652123320344
Q gi|254780263|r 132 NKVDAVDDDELLDISEYEIRDLLKE--HKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKA 192 (392)
Q Consensus 132 NKmD~v~~~~~~~~i~~~i~~~l~~--~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~ 192 (392)
||.|+-+.+.....++.-+ .++.. .+| ..|++.+|+.++ ......|..+..+.+.
T Consensus 175 NKaD~~~A~~~~~~l~~~l-~l~~~~~~~W--~p~Vl~tSA~~g---~Gi~el~~~I~~~~~~ 231 (267)
T pfam03308 175 NKADLPGAERTARELRSAL-HLLTPKEAGW--RPPVLTTSAVTG---EGIDELWDAIEEHREF 231 (267)
T ss_pred ECCCHHHHHHHHHHHHHHH-HCCCCCCCCC--CCCEEEEECCCC---CCHHHHHHHHHHHHHH
T ss_conf 6676476999999999998-5179877899--999899874788---9999999999999999
No 260
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.40 E-value=1.3e-06 Score=60.13 Aligned_cols=136 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEEC--C-CEEEEEEECCCCHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206--378999821--9-9089998478730246779
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYET--D-KRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~--~-~~~i~iiD~PGH~~f~~~m 88 (392)
.|+++|--.-|||+|+.++.... ..++ .--|| +.....+.. + ...+.|.||+|++.|-. |
T Consensus 2 KvvllGd~~VGKTSli~rf~~~~------------F~~~--y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~~-~ 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG------------FGKS--YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-M 66 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC------------CCCC--CCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHHH-H
T ss_conf 79999999970999999997498------------9887--7886557889999998799469999996998500237-8
Q ss_pred HHH-HHCCCCEEEEECCCCCCCCCHHHHHH----HH----HHCC-CCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEE
Q ss_conf 877-40023314520123443321067788----88----6318-76023310023335612221101232100111014
Q gi|254780263|r 89 ITG-ATQADGAILVCAAEDGPKPQTREHIL----LA----RQIG-ISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 89 i~g-~~~~D~ailvVda~~G~~~QT~eh~~----l~----~~lg-i~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~ 158 (392)
... ...+|+++||-|-+.= +|-+++. .+ .... -|.++++=||.|+.. +| +...++-+++.++.
T Consensus 67 ~~~y~~~a~~~ilVYDitn~---~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~--~R-~Vs~ee~~~~A~~~- 139 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNS---QSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH--NR-TVKDDKHARFAQAN- 139 (215)
T ss_pred HHHHHHHHCCEEEECCCCCH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHH--HC-CCCHHHHHHHHHHC-
T ss_conf 99999751513774147867---8999899999999998504577852999975454286--47-76999999999982-
Q ss_pred EEEEEECCCCEEEEEE
Q ss_conf 5322102331146764
Q gi|254780263|r 159 YSDDTPIIRGSALCAL 174 (392)
Q Consensus 159 ~~~~~pii~~sa~~g~ 174 (392)
+.+++.+||.+|.
T Consensus 140 ---g~~f~E~SAktg~ 152 (215)
T cd04109 140 ---GMESCLVSAKTGD 152 (215)
T ss_pred ---CCEEEEEECCCCC
T ss_conf ---9989998389994
No 261
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=98.40 E-value=1.4e-06 Score=59.80 Aligned_cols=133 Identities=21% Similarity=0.298 Sum_probs=85.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHHHHHH----
Q ss_conf 999904689887899999987644420013126868698629206378999821-990899984787302467798----
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYVKNMI---- 89 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~~~mi---- 89 (392)
+-.+|--.+|||+.-..+-..+... |+ +.-|-|+++-...... .+-.+++.|+||+.+|+.+..
T Consensus 2 iLLMG~~~sGKTSi~~vIF~~~~p~-------dT----~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~f~e~~~~~~~ 70 (230)
T pfam04670 2 VLLMGLRGSGKSSMRSIIFSNYSPR-------DT----LRLGATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQK 70 (230)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCHH-------HH----CCCCCCCCEEEEEEECCCCCEEEEEECCCCHHHHHHHCCCCH
T ss_conf 7875689998777699986799821-------41----202577776778774168736899976983535441200223
Q ss_pred -HHHHCCCCEEEEECCCCCCCCC--HH--HHHHHHHHC--CCCCEEEEECCCCCCCCHHH---HHHCCCCCCEEEEEEEE
Q ss_conf -7740023314520123443321--06--778888631--87602331002333561222---11012321001110145
Q gi|254780263|r 90 -TGATQADGAILVCAAEDGPKPQ--TR--EHILLARQI--GISSIVVYMNKVDAVDDDEL---LDISEYEIRDLLKEHKY 159 (392)
Q Consensus 90 -~g~~~~D~ailvVda~~G~~~Q--T~--eh~~l~~~l--gi~~iIv~iNKmD~v~~~~~---~~~i~~~i~~~l~~~~~ 159 (392)
.-.+.+.+-|.|+|+....... ++ +.+..+... +++ +-|+|.|||++.++++ +..+++++.+.+...+.
T Consensus 71 e~if~~v~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~-v~vfiHK~D~l~~d~r~~~~~~~~~~i~~~~~~~~~ 149 (230)
T pfam04670 71 EHIFSNVGVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAK-VFVLIHKMDLLSEDERKEIFEDRKEEIIEEIEDFGI 149 (230)
T ss_pred HHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE-EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5476447889999968886099999999999999998399988-999996035888667899999999999998765688
No 262
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.37 E-value=2.1e-06 Score=58.81 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC-----------
Q ss_conf 799999046898878999999876444200131268686986292063789998219908999847873-----------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH----------- 81 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH----------- 81 (392)
-.++.+|-..+|||||+.+++....+.+.. ..++ +.=+++.... ..+..+.+-|.||-
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadY---pFTT-------L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG 228 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADY---PFTT-------LVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLG 228 (369)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCCC---CCCC-------CCCCCCEEEE-CCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 011412589885798998886068854488---6530-------2475307996-4886079934753235644688763
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCC--CCCC----CHHHHHHHH--HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEE
Q ss_conf 0246779877400233145201234--4332----106778888--6318760233100233356122211012321001
Q gi|254780263|r 82 ADYVKNMITGATQADGAILVCAAED--GPKP----QTREHILLA--RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL 153 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D~ailvVda~~--G~~~----QT~eh~~l~--~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~ 153 (392)
-+|+|...|- -.-+.|||.+. +..| ++.++=.-+ ..|--++.+|+.||||++.+++.++..+..+.+.
T Consensus 229 ~~FLrHIERt----~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~ 304 (369)
T COG0536 229 LRFLRHIERT----RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA 304 (369)
T ss_pred HHHHHHHHHH----HEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 8888788865----154799856765677989999999999998577753585699985557766789999999999874
Q ss_pred EEEEEEEEEEECCCCEEEEE
Q ss_conf 11014532210233114676
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g 173 (392)
.++. +..++|++++
T Consensus 305 ---~~~~---~~~~ISa~t~ 318 (369)
T COG0536 305 ---LGWE---VFYLISALTR 318 (369)
T ss_pred ---CCCC---CCEEEEHHCC
T ss_conf ---0887---6315543102
No 263
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.36 E-value=2.7e-07 Score=64.32 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCC
Q ss_conf 00110000000135544543014874245348967999506874321254121001----21144321001366641124
Q gi|254780263|r 205 DAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGV 280 (392)
Q Consensus 205 ~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi 280 (392)
+.||...|+.+-..+..|++...||.||+|+.++.+.+ +.+. ..|+.+|+.+ ..+++++.|||++++.
T Consensus 1 e~~l~a~VFKi~~d~~~grl~yvRv~sG~l~~~~~v~~-~~~~---~eki~~l~~~~~~~~~~v~~~~AGdI~av~---- 72 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRV-NREE---KIKITELRVFNNGEVVTADTVTAGDIAILT---- 72 (85)
T ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCEEEC-CCCC---EEEECEEEEEECCCEEECCEECCCCEEEEE----
T ss_conf 99734999988877999859999983409828988965-8996---040234899908995697789899999998----
Q ss_pred CCCEEECHHEEEC
Q ss_conf 5432202117732
Q gi|254780263|r 281 NRADVPRGRVVCA 293 (392)
Q Consensus 281 ~~~di~rGdvl~~ 293 (392)
...+++.||+|.+
T Consensus 73 gl~~~~~GDtlgd 85 (85)
T cd03690 73 GLKGLRVGDVLGD 85 (85)
T ss_pred CCCCCCCCCCCCC
T ss_conf 9998837772278
No 264
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.36 E-value=1.3e-06 Score=60.07 Aligned_cols=152 Identities=18% Similarity=0.146 Sum_probs=87.2
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEE--EECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206--378999--821990899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVS--YETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~--~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
.|+++|.-.-|||+|+.+.+...-. .. ...-|+ +..... ...+...+.+.||+|.+.|.....
T Consensus 2 KVvllGd~gVGKTSLi~rf~~~~f~---------~~----~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~~~~~~ 68 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD---------DH----AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSC 68 (221)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC---------CC----CCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 7999998997099999999819869---------86----6787442488999999999998999998987312666656
Q ss_pred HHHHCCCCEEEEECCCCC-CCCCHHHHHHHHH----HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 774002331452012344-3321067788886----31876023310023335612221101232100111014532210
Q gi|254780263|r 90 TGATQADGAILVCAAEDG-PKPQTREHILLAR----QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G-~~~QT~eh~~l~~----~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
-...+|+++||-|.++= -+....+-+..++ .-.+| +|++=||+|+...-+ ...+|-+++-.+. +.+
T Consensus 69 -~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~p-iILVGNK~DL~~~R~---Vs~eEg~~~A~~~----~~~ 139 (221)
T cd04148 69 -MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSRE---VSVQEGRACAVVF----DCK 139 (221)
T ss_pred -HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCE-EEEEEECCCHHHHCC---CCHHHHHHHHHHC----CCE
T ss_conf -5306868999996466778888999999999864899951-999853566686389---9999999999985----998
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 233114676411444565212332034431025
Q gi|254780263|r 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 165 ii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
++.+||.++. ++..+++.+...+
T Consensus 140 F~EtSAk~~~----------NV~elF~~lvrqI 162 (221)
T cd04148 140 FIETSAGLQH----------NVDELLEGIVRQI 162 (221)
T ss_pred EEECCCCCCC----------CHHHHHHHHHHHH
T ss_conf 9994579994----------9899999999999
No 265
>KOG0073 consensus
Probab=98.35 E-value=3.7e-06 Score=57.27 Aligned_cols=144 Identities=22% Similarity=0.314 Sum_probs=90.6
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH-
Q ss_conf 4210388279999904689887899999987644420013126868698629206378999821990899984787302-
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD- 83 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~- 83 (392)
.+.|++ .++|-++|-=+|||||++.+|++.. .|.. .-.+|.-| ...+++++.+++-|..|...
T Consensus 10 ~k~ker-E~riLiLGLdNsGKTti~~kl~~~~---------~~~i--~pt~gf~I----ktl~~~~~~L~iwDvGGq~~l 73 (185)
T KOG0073 10 QKLKER-EVRILILGLDNSGKTTIVKKLLGED---------TDTI--SPTLGFQI----KTLEYKGYTLNIWDVGGQKTL 73 (185)
T ss_pred HHHHHH-EEEEEEEECCCCCCHHHHHHHCCCC---------CCCC--CCCCCEEE----EEEEECCEEEEEEECCCCCHH
T ss_conf 886523-4479999127898244898853898---------2232--87211355----787742428999974885336
Q ss_pred --HHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHH----HHCCCCCEEEEECCCCCCCCHHH--HHHCCCCCCEEE
Q ss_conf --467798774002331452012344-332106778888----63187602331002333561222--110123210011
Q gi|254780263|r 84 --YVKNMITGATQADGAILVCAAEDG-PKPQTREHILLA----RQIGISSIVVYMNKVDAVDDDEL--LDISEYEIRDLL 154 (392)
Q Consensus 84 --f~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l~----~~lgi~~iIv~iNKmD~v~~~~~--~~~i~~~i~~~l 154 (392)
|.+|-. ..+|+.|.|||+.+- -+.+++.++.-+ +..|-+ ++|.-||.|+...=.. ...+ .++.+++
T Consensus 74 r~~W~nYf---estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ 148 (185)
T KOG0073 74 RSYWKNYF---ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSLEEISKA-LDLEELA 148 (185)
T ss_pred HHHHHHHH---HCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHH-HCHHHHC
T ss_conf 87887766---50472899997720888999999999997565434884-3999734768552478788876-4778761
Q ss_pred EEEEEEEEEECCCCEEEEE
Q ss_conf 1014532210233114676
Q gi|254780263|r 155 KEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 155 ~~~~~~~~~pii~~sa~~g 173 (392)
+.. .++++.+|+++|
T Consensus 149 ks~----~~~l~~cs~~tg 163 (185)
T KOG0073 149 KSH----HWRLVKCSAVTG 163 (185)
T ss_pred CCC----CCEEEEEECCCC
T ss_conf 336----722899854545
No 266
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=3.3e-06 Score=57.53 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=80.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
..++++|.-.-|||+|+-++... ..+++ .--|+--.|. .++.++ ..+.|-||.|+++|-.-.-
T Consensus 14 ~KiVlVGD~~VGKTsLl~~~~~~------------~F~~~--y~pTv~~~~~~~i~v~~~~v~L~lWDTAGqE~y~~lr~ 79 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKD------------CYPET--YVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHH
T ss_conf 89999998998999999999739------------89998--58836888899999999999999983899701003679
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH------HHHHH-CCCCCEEEEECCCCCCCCHHHH-HHCC--------CCCCEE
Q ss_conf 774002331452012344332106778------88863-1876023310023335612221-1012--------321001
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI------LLARQ-IGISSIVVYMNKVDAVDDDELL-DISE--------YEIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~------~l~~~-lgi~~iIv~iNKmD~v~~~~~~-~~i~--------~~i~~~ 153 (392)
.--..+|++|||-|.+. ++|-+++ .+-.. -++| +|++=||.|+-++.... ++.. ++-..+
T Consensus 80 ~yY~~a~~~ll~Fdvt~---~~Sfe~~~~~Wi~Ei~~~~p~~p-iiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~ 155 (232)
T cd04174 80 LCYSDSDAVLLCFDISR---PETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 97406878999996898---79999899999999998689997-899987602154757788997568887579999999
Q ss_pred EEEEEEEEEEECCCCEEEEEE
Q ss_conf 110145322102331146764
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCAL 174 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~ 174 (392)
.++.+. ..++.+||.+|-
T Consensus 156 Ak~iga---~~Y~E~SA~tge 173 (232)
T cd04174 156 AKQLGA---EVYLECSAFTSE 173 (232)
T ss_pred HHHCCC---CEEEECCCCCCC
T ss_conf 997499---789987568666
No 267
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=4.2e-06 Score=56.91 Aligned_cols=142 Identities=19% Similarity=0.157 Sum_probs=79.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789-9982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
+.|+++|.-.-|||+|+-++... ..+++ .--|+-..+ ..+..++ ..+.|-||+|.++|-.-.-
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~------------~F~~~--y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~l~~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD------------CYPET--YVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP 67 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHCCHHH
T ss_conf 09999999997789999999639------------99998--57856888899999999999999996898742110366
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHH----HH-HHHH--CCCCCEEEEECCCCCCCCHH-HHH--------HCCCCCCEE
Q ss_conf 77400233145201234433210677----88-8863--18760233100233356122-211--------012321001
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREH----IL-LARQ--IGISSIVVYMNKVDAVDDDE-LLD--------ISEYEIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh----~~-l~~~--lgi~~iIv~iNKmD~v~~~~-~~~--------~i~~~i~~~ 153 (392)
.....+|++|||-|.+.- .|-++ +. -++. -.+| +|++=||.|+-++.. ..+ ...++-.++
T Consensus 68 ~~y~~a~~~ilvydit~~---~Sf~~v~~~W~~ei~~~~~~~~-iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~ 143 (178)
T cd04131 68 LCYPDSDAVLICFDISRP---ETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAI 143 (178)
T ss_pred HHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 773468789999737987---8899999999999998687998-899998543664445566776446777689999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEE
Q ss_conf 1101453221023311467641
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~ 175 (392)
-++.+ -.+++.+||.+|-+
T Consensus 144 A~~~g---a~~y~EtSAktg~n 162 (178)
T cd04131 144 AKQLG---AEIYLECSAFTSEK 162 (178)
T ss_pred HHHCC---CCEEEECCCCCCCC
T ss_conf 99749---98999978486873
No 268
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.29 E-value=1.3e-06 Score=60.10 Aligned_cols=152 Identities=19% Similarity=0.173 Sum_probs=83.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899-982199--08999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|--..|||+|+-++... ..+++ .--|+...|. .+..++ ..+.|.||+|+++|-.-.-.
T Consensus 3 KivllGd~~VGKTsLi~r~~~~------------~f~~~--y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~~~~~ 68 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLG------------EFPEE--YHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPL 68 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCC
T ss_conf 9999998997689999999829------------89998--788667898999999999999999978887034546041
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHH-----HHHHHC--CCCCEEEEECCCCCCCCHHH----H-H-HC-CCCCCEEEEE
Q ss_conf 74002331452012344332106778-----888631--87602331002333561222----1-1-01-2321001110
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHI-----LLARQI--GISSIVVYMNKVDAVDDDEL----L-D-IS-EYEIRDLLKE 156 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~l--gi~~iIv~iNKmD~v~~~~~----~-~-~i-~~~i~~~l~~ 156 (392)
-...+|++|||-|.+.- +|-+++ ..++.. .+| +|++-||+|+-+.... . + .+ .++-..+-++
T Consensus 69 ~~~~a~~~ilvydi~~~---~Sf~~~~~~w~~~~~~~~~~~p-iilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~ 144 (187)
T cd04129 69 SYSKAHVILIGFAVDTP---DSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred EECCCCEEEEECCCCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHH
T ss_conf 23388589997026986---6799999999999998587998-8999886001134112111223155789999999998
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 1453221023311467641144456521233203443102
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
.+. .+++.+||.++. ++..+++.+...
T Consensus 145 ~~~---~~y~EtSAk~~~----------nV~e~F~~~~r~ 171 (187)
T cd04129 145 IGA---KKYMECSALTGE----------GVDDVFEAATRA 171 (187)
T ss_pred CCC---CEEEEECCCCCC----------CHHHHHHHHHHH
T ss_conf 499---789996889997----------989999999999
No 269
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.29 E-value=1.5e-06 Score=59.69 Aligned_cols=85 Identities=24% Similarity=0.234 Sum_probs=59.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---HHH----H
Q ss_conf 799999046898878999999876444200131268686986292063789998219908999847873---024----6
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---ADY----V 85 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---~~f----~ 85 (392)
..++++|-...|||||+..||...++.+.. ..+ |...--..+++++..|-|+|+||- +.. .
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y----~FT--------Tl~~vPG~l~Y~ga~IQild~Pgii~gas~g~grG 131 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADY----PFT--------TLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG 131 (365)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCC----CCE--------ECCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 389997688745899998876887643456----741--------02445744754781699972763125765688876
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 779877400233145201234433
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPK 109 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~ 109 (392)
+.++..+..||..++|+|+.+...
T Consensus 132 ~~vls~~R~ADlIiiVld~~~~~~ 155 (365)
T COG1163 132 RQVLSVARNADLIIIVLDVFEDPH 155 (365)
T ss_pred CEEEEEECCCCEEEEEEECCCCHH
T ss_conf 465465215888999971688824
No 270
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.24 E-value=1e-06 Score=60.76 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=51.6
Q ss_pred CCCCCEEEEEEECCCCCCCEEEEEECC------CCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHH
Q ss_conf 445430148742453489679995068------74321254121001----21144321001366641124543220211
Q gi|254780263|r 220 GRGTVVTGCIKRGRIKAGSDVEIIGMG------GKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGR 289 (392)
Q Consensus 220 g~G~Vv~GrV~sG~l~~Gd~i~i~p~~------~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGd 289 (392)
..+-+.+|||.||+|+.||+++++.++ ....+.+|.+++.+ +.++++|.||++|++ .|++ +++.|.
T Consensus 14 ~~~fia~gRV~SGtl~~G~~V~vlgp~y~~~~~~~~~~~~I~~l~~~~G~~~~~v~~~~AGnIv~i--~Gld--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEEECEEECCCEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCEEECCEECCCCEEEE--ECCC--CCEEEE
T ss_conf 978999999986668089999997887888877613388986999995688999098889999999--7765--443775
Q ss_pred EEE
Q ss_conf 773
Q gi|254780263|r 290 VVC 292 (392)
Q Consensus 290 vl~ 292 (392)
+.+
T Consensus 90 ~~t 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred EEE
T ss_conf 983
No 271
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.24 E-value=1.4e-05 Score=53.64 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-----CCEEEEEEECCCCHHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821-----9908999847873024677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-----DKRFYSHIDCPGHADYVKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-----~~~~i~iiD~PGH~~f~~~ 87 (392)
+.|+++|.-.-|||+|+.++....- ..+ ....-|.+++.....+.. ..+.+.|-||.|.+.| ++
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f--------~~~--~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery-~s 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQV--------LGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-KS 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--------CCC--CCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHH-HH
T ss_conf 9899999999899999999983988--------888--888503678999999337876783899999989987757-76
Q ss_pred HHHH-HHCCCCEEEEECCCCCCCCCHHHHH-----HH---------------------HHHCCCCCEEEEECCCCCCCCH
Q ss_conf 9877-4002331452012344332106778-----88---------------------8631876023310023335612
Q gi|254780263|r 88 MITG-ATQADGAILVCAAEDGPKPQTREHI-----LL---------------------ARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 88 mi~g-~~~~D~ailvVda~~G~~~QT~eh~-----~l---------------------~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
|... -..+|++|||-|.+.- +|-+++ .+ .....|| ++|+=||.|++...
T Consensus 70 l~~~yYr~a~gvILVyDvTnr---~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vP-ilvVGtK~D~~~~r 145 (202)
T cd04102 70 TRAVFYNQVNGIILVHDLTNR---KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHHHCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECHHHCCCC
T ss_conf 789975889899999989498---99986999999997536766654556665553334678975-89997606524343
No 272
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.24 E-value=2.7e-06 Score=58.11 Aligned_cols=155 Identities=19% Similarity=0.171 Sum_probs=86.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEE--EEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206-3789--998219908999847873024677987
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAH--VSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~--~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
.|+++|.-.-|||+|+.+++...=.+ +---|| +... ..+..+...+.|.||.|.+.|-.-.-.
T Consensus 2 KIvvlGdsgVGKTSLi~Rf~~~~F~~--------------~y~pTi~d~~~k~i~i~g~~v~L~IwDTaGqe~f~sl~~~ 67 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--------------QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRL 67 (247)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC--------------CCCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCCCCHHH
T ss_conf 79999989978999999996496899--------------8788835318899999999999999967665368744201
Q ss_pred HHHCCCCEEEEECCCCCCC-C---CHHHHHHHH---------HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf 7400233145201234433-2---106778888---------63187602331002333561222110123210011101
Q gi|254780263|r 91 GATQADGAILVCAAEDGPK-P---QTREHILLA---------RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH 157 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~-~---QT~eh~~l~---------~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~ 157 (392)
-...+|++|||-|.+.-.. . +-.+.+.-. ..-.+| +|++=||.|+-+. |. ...+|..+++..
T Consensus 68 y~~~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vp-iiLVGNK~DL~~~--R~-Vs~eEa~~~~A~- 142 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFP--RE-VQRDEVEQLVGG- 142 (247)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEEEECCCCHHC--CC-CCHHHHHHHHHH-
T ss_conf 312177899999799878999899999999986400100135788875-8998665543201--78-799999999997-
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 453221023311467641144456521233203443102522
Q gi|254780263|r 158 KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPT 199 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~ 199 (392)
.....++.+||.++. ++..++..|......
T Consensus 143 --~~~~~f~EtSAKt~~----------NV~E~F~~L~~~~~l 172 (247)
T cd04143 143 --DENCAYFEVSAKKNS----------NLDEMFRALFSLAKL 172 (247)
T ss_pred --HCCCEEEECCCCCCC----------CHHHHHHHHHHHCCC
T ss_conf --689879988789994----------989999999985499
No 273
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.22 E-value=2.2e-06 Score=58.71 Aligned_cols=131 Identities=21% Similarity=0.198 Sum_probs=75.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE--EEEEEEEECCC--EEEEEEECCCCHHHHHHHHHH-H
Q ss_conf 904689887899999987644420013126868698629206--37899982199--089998478730246779877-4
Q gi|254780263|r 18 IGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI--ATAHVSYETDK--RFYSHIDCPGHADYVKNMITG-A 92 (392)
Q Consensus 18 iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi--~~~~~~~~~~~--~~i~iiD~PGH~~f~~~mi~g-~ 92 (392)
+|.-.-|||||+-+..... . +...--|| +.....+..++ .++.|-||+|.+.|-. |..+ .
T Consensus 1 vGD~gVGKTsli~R~~~~~------------F--~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~s-l~~~yy 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE------------F--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-LRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHHCCC------------C--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCC-CCHHHC
T ss_conf 9898878999999994099------------9--999788714898999999899899999998988700011-026550
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHH-----HHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 002331452012344332106778-----88863-187602331002333561222110123210011101453221023
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHI-----LLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~-----~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
..++++|||.|.+.- +|-+++ .+.+. -.+| +|+|=||+|+.+. + +..+-..+-++. +.+++
T Consensus 66 r~a~~~IlvfDvt~~---~SF~~l~~W~~~l~~~~~~ip-iiLvGNK~DL~~r-~----V~~e~~~~a~~~----~~~y~ 132 (200)
T smart00176 66 IQGQCAIIMFDVTAR---VTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDR-K----VKAKSITFHRKK----NLQYY 132 (200)
T ss_pred CCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCC-C----CCHHHHHHHHHC----CCCEE
T ss_conf 578788999635877---899989999999998579998-8999988757404-3----659999999987----99789
Q ss_pred CCEEEEEEEC
Q ss_conf 3114676411
Q gi|254780263|r 167 RGSALCALQG 176 (392)
Q Consensus 167 ~~sa~~g~~~ 176 (392)
.+||.++.+.
T Consensus 133 EtSAKt~~Nv 142 (200)
T smart00176 133 DISAKSNYNF 142 (200)
T ss_pred EEECCCCCCH
T ss_conf 8300469697
No 274
>KOG0092 consensus
Probab=98.17 E-value=8.1e-06 Score=55.16 Aligned_cols=158 Identities=20% Similarity=0.277 Sum_probs=94.4
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEE--EECCC--EEEEEEECCCCHHH--
Q ss_conf 8279999904689887899999987644420013126868698629206378999--82199--08999847873024--
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVS--YETDK--RFYSHIDCPGHADY-- 84 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~--~~i~iiD~PGH~~f-- 84 (392)
..+.++++|-...|||+|+-|... |...+- +--||-.+|.. ....+ .++-|=||.|.+.|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk------------~~F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092 4 REFKVVLLGDSGVGKSSLVLRFVK------------DQFHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHH------------CCCCCC--CCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCC
T ss_conf 257999986787770241122232------------756632--345400078999998489578999987677300335
Q ss_pred HHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHCCCCCEEE--EECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 67798774002331452012344-3321067788886318760233--10023335612221101232100111014532
Q gi|254780263|r 85 VKNMITGATQADGAILVCAAEDG-PKPQTREHILLARQIGISSIVV--YMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 85 ~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l~~~lgi~~iIv--~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
+..|. -+.|++||+|-|.+.- -+.+-++-+.-++...-|++++ +=||+|+.+.-+ .-.++.+.+-.. .
T Consensus 70 lapMY--yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~---V~~~ea~~yAe~----~ 140 (200)
T KOG0092 70 LAPMY--YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERRE---VEFEEAQAYAES----Q 140 (200)
T ss_pred CCCCE--ECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCC---CCHHHHHHHHHH----C
T ss_conf 56101--04776799998556678999999999999862798759998325165410345---468888989985----4
Q ss_pred EEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 2102331146764114445652123320344310252222
Q gi|254780263|r 162 DTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ 201 (392)
Q Consensus 162 ~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~ 201 (392)
..+++..||.+|. ++..++..|...+|...
T Consensus 141 gll~~ETSAKTg~----------Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092 141 GLLFFETSAKTGE----------NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CCEEEEEECCCCC----------CHHHHHHHHHHHCCCCC
T ss_conf 9879998525565----------89999999997566766
No 275
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=98.16 E-value=2.1e-05 Score=52.59 Aligned_cols=117 Identities=23% Similarity=0.317 Sum_probs=73.6
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH-------HHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199089998478730-------246
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA-------DYV 85 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~-------~f~ 85 (392)
|+|+.+|-..+|||+....|++...-... . -....|-......-.++++++++|||||-- +..
T Consensus 1 LrivLlGktG~GKSstgNtILG~~~F~s~-------~---~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~~~~~ 70 (200)
T pfam04548 1 LRIVLVGKTGNGKSATGNSILGRKAFESK-------L---RAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFIS 70 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCC-------C---CCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHH
T ss_conf 98999799998436557661797533578-------9---8888741368999998996899997866357677869999
Q ss_pred HHHHHHHH----CCCCEEEEECCCCCCCCCHHHHHH-HHHHCC---CCCEEEEECCCCCCCCH
Q ss_conf 77987740----023314520123443321067788-886318---76023310023335612
Q gi|254780263|r 86 KNMITGAT----QADGAILVCAAEDGPKPQTREHIL-LARQIG---ISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 86 ~~mi~g~~----~~D~ailvVda~~G~~~QT~eh~~-l~~~lg---i~~iIv~iNKmD~v~~~ 140 (392)
+++.+.++ .+|+.|||++... ...+-++.+. +...+| .++.||..+.-|....+
T Consensus 71 ~ei~~~~~l~~pGpHa~LLVi~~~r-fT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~~~ 132 (200)
T pfam04548 71 KEIIRCLLLAEPGPHAVLLVLSLGR-FTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDD 132 (200)
T ss_pred HHHHHHHHHCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCCC
T ss_conf 9999999855899857999986688-8889999999999997578680099999780214999
No 276
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.16 E-value=1.1e-05 Score=54.28 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=78.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE-EEEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 799999046898878999999876444200131268686986292063789-9982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH-VSYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~-~~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
+.|+++|.-.-|||+|+-++... ..+++ .--||-..+ ..++.++ ..+.|-||+|+++|-.-.-
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~------------~F~~~--y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~l~~ 71 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKD------------CFPEN--YVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 71 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC------------CCCCC--CCCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCCCCH
T ss_conf 89999999998999999999839------------99998--68735322689999999999999996898620122125
Q ss_pred HHHHCCCCEEEEECCCCCCC-CCHHHHHH-HHHH--CCCCCEEEEECCCCCCCCHH-HHHH-------C-CCCCCEEEEE
Q ss_conf 77400233145201234433-21067788-8863--18760233100233356122-2110-------1-2321001110
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-PQTREHIL-LARQ--IGISSIVVYMNKVDAVDDDE-LLDI-------S-EYEIRDLLKE 156 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~QT~eh~~-l~~~--lgi~~iIv~iNKmD~v~~~~-~~~~-------i-~~~i~~~l~~ 156 (392)
.....+|+++||-|-++-.. ..-.+.+. .++. -.+| +|++=||.|+-++.. ..+. + .++-.++-++
T Consensus 72 ~~y~~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~-iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~ 150 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ 150 (182)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 5512787899996489778899999999999998687998-899961710124414566776456778699999999997
Q ss_pred EEEEEEEECCCCEEEEEEE
Q ss_conf 1453221023311467641
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~ 175 (392)
.+ ..+++.+||..+.+
T Consensus 151 ~g---~~~y~EtSAk~~~n 166 (182)
T cd04172 151 IG---AATYIECSALQSEN 166 (182)
T ss_pred CC---CCEEEECCCCCCCC
T ss_conf 69---97999917078995
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.13 E-value=1.2e-05 Score=54.00 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=82.9
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCC----CCCC------CHH--HHHC----CCE-----EEE--
Q ss_conf 4210388279999904689887899999987644420013----1268------686--9862----920-----637--
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYG----DIDS------APE--EKLR----GIT-----IAT-- 61 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~----~~D~------~~~--E~~r----GiT-----i~~-- 61 (392)
+..|.|+++ |.++|==.|||||.+-.|-.++.+.+..-+ ++.| ++. -|++ |+- +.+
T Consensus 115 ~p~Kgk~~V-iMfVGLQGaGKTTtctKLA~YYk~rGfK~~lvCADTFRAGAFdQLkqNA~kA~iPFYGsy~E~DPVkiA~ 193 (453)
T TIGR01425 115 TPKKGKSSV-IMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYLESDPVKIAS 193 (453)
T ss_pred ECCCCCCEE-EEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEC
T ss_conf 115688215-8886214887156687877776326643256517754232489998747644897120104898707800
Q ss_pred -EEEEEECCCEEEEEEECCC-CH---HHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHC--CCCCEEEEEC
Q ss_conf -8999821990899984787-30---246779--8774002331452012344332106778888631--8760233100
Q gi|254780263|r 62 -AHVSYETDKRFYSHIDCPG-HA---DYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLARQI--GISSIVVYMN 132 (392)
Q Consensus 62 -~~~~~~~~~~~i~iiD~PG-H~---~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~l--gi~~iIv~iN 132 (392)
|...|.-++.-|.||||=| |+ ..-.+| ++-|-++|..|.|-|++-| |.-| ..|+++ .+..-=|.||
T Consensus 194 EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIG---QAA~--~QAkAFK~~~~vGSvIiT 268 (453)
T TIGR01425 194 EGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIG---QAAF--SQAKAFKDSVEVGSVIIT 268 (453)
T ss_pred CCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHH---HHHH--HHHHHHHHCCCCEEEEEE
T ss_conf 20113221278479983798732258888998768633499836998066166---7889--999986300350038875
Q ss_pred CCCC
Q ss_conf 2333
Q gi|254780263|r 133 KVDA 136 (392)
Q Consensus 133 KmD~ 136 (392)
|||-
T Consensus 269 KLDG 272 (453)
T TIGR01425 269 KLDG 272 (453)
T ss_pred CCCC
T ss_conf 1567
No 278
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.12 E-value=1.5e-05 Score=53.44 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=80.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE-EEECCC--EEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899-982199--0899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV-SYETDK--RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~-~~~~~~--~~i~iiD~PGH~~f~~~mi 89 (392)
..++++|.-.-|||+|+-++... ..+++- --||-..|. .++.++ ..+.|-||.|.++|-.-.-
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~------------~F~~~y--~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~~lr~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKD------------AYPGSY--VPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRP 67 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCCCC--CCCEEEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH
T ss_conf 09999898998989999999639------------999984--7845877899999999999999976888503455678
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH----H-HHHH--CCCCCEEEEECCCCCCCCHHH-HHHCCC--------CCCEE
Q ss_conf 774002331452012344332106778----8-8863--187602331002333561222-110123--------21001
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI----L-LARQ--IGISSIVVYMNKVDAVDDDEL-LDISEY--------EIRDL 153 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~----~-l~~~--lgi~~iIv~iNKmD~v~~~~~-~~~i~~--------~i~~~ 153 (392)
.--..+|++|||.|-+.- +|-+++ . .++. -.+| +|++=||.|+-++... -++.+. |-..+
T Consensus 68 ~yyr~a~~~llvfdit~~---~SF~~v~~~W~~ei~~~~p~~p-iiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~l 143 (222)
T cd04173 68 LAYPDSDAVLICFDISRP---ETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVL 143 (222)
T ss_pred HHCCCCCEEEEEEECCCH---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 750369899999838977---8899999999999998589997-899958742456878899998557888789999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEEC
Q ss_conf 11014532210233114676411
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQG 176 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~~ 176 (392)
-++.+ -.+++.+||.++.++
T Consensus 144 A~~~g---a~~y~EcSAk~~~n~ 163 (222)
T cd04173 144 AKQVG---AVSYVECSSRSSERS 163 (222)
T ss_pred HHHCC---CCEEEECCCCCCCCC
T ss_conf 99769---988998884868749
No 279
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.11 E-value=4.4e-05 Score=50.58 Aligned_cols=123 Identities=20% Similarity=0.313 Sum_probs=70.8
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHH------HCCCEEEEEEE-------------EE
Q ss_conf 82799999046898878999999876444200131--2686---8698------62920637899-------------98
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEK------LRGITIATAHV-------------SY 66 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~------~rGiTi~~~~~-------------~~ 66 (392)
|++ |+++|--..||||.+..|-..+.++++.-+- +|+. ..|+ .-|+..-.... .+
T Consensus 1 P~v-i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~ 79 (196)
T pfam00448 1 PNV-ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKA 79 (196)
T ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 969-9998999998899999999999977992899975877688999999999863981781487778789999999998
Q ss_pred ECCCEEEEEEECCC--CHH--HHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 21990899984787--302--46779--8774002331452012344332106778888631876023310023335
Q gi|254780263|r 67 ETDKRFYSHIDCPG--HAD--YVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 67 ~~~~~~i~iiD~PG--H~~--f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
..+++.+-|||||| |.| .+.+| +......+-.+||+||..|.... .+....-+.+++..+| ++|+|..
T Consensus 80 ~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~-~~~~~f~~~~~~~~~I--~TKlDet 153 (196)
T pfam00448 80 KAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNAL-NQAKAFNEAVGITGVI--LTKLDGD 153 (196)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH-HHHHHHHHHCCCCCEE--EEEECCC
T ss_conf 846899999989998747677899999998522873028998567782137-8999876004776268--8840578
No 280
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.10 E-value=2.2e-05 Score=52.45 Aligned_cols=82 Identities=17% Similarity=0.317 Sum_probs=71.4
Q ss_pred CEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECH
Q ss_conf 00000001355445430148742453489679995068743212541210012114432100136664112454322021
Q gi|254780263|r 209 LMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRG 288 (392)
Q Consensus 209 r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rG 288 (392)
+.-|..+|+++..|+|+.-+|..|.++.+..+.++-.+.--...++.||..|...|.++..|.-||+.|.| ..|+..|
T Consensus 748 ~a~v~~~f~~~k~g~iagc~v~~g~i~~~~~~r~~r~~~~~~~g~~~sl~~~k~~v~ev~~g~ecgi~~~~--~~~~~~g 825 (839)
T PRK05306 748 QAEVREVFKVSKVGTIAGCMVTEGKVKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLEN--YNDIKEG 825 (839)
T ss_pred EEEEEEEEECCCCCEEEEEEEEECEEECCCCEEEEECCEEEEEEEEHHHHHHHHCCCHHCCCCCCEEEECC--CCCCCCC
T ss_conf 99974579758873688899871889649927998799899962636641102031232389425267337--3577669
Q ss_pred HEEE
Q ss_conf 1773
Q gi|254780263|r 289 RVVC 292 (392)
Q Consensus 289 dvl~ 292 (392)
|+|-
T Consensus 826 d~ie 829 (839)
T PRK05306 826 DIIE 829 (839)
T ss_pred CEEE
T ss_conf 8899
No 281
>KOG2486 consensus
Probab=98.09 E-value=5.4e-05 Score=50.04 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=95.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HCCCEEEEEEEEEECCCEEEEEEECCCC----------
Q ss_conf 79999904689887899999987644420013126868698-6292063789998219908999847873----------
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEK-LRGITIATAHVSYETDKRFYSHIDCPGH---------- 81 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~-~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------- 81 (392)
..+++.|.-.-|||+|+.-+++..... | .++ ..|.|..+-+ ..-+.++.++|.||.
T Consensus 137 pe~~~~g~SNVGKSSLln~~~r~k~~~-------~---t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~~~~~ 203 (320)
T KOG2486 137 PELAFYGRSNVGKSSLLNDLVRVKNIA-------D---TSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYGFELP 203 (320)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHH-------H---HCCCCCCCCEEEEE---EECCCEEEEEECCCCCCCCCCCCCC
T ss_conf 526662477622788876543214556-------4---03788765113200---1205548998468865456785574
Q ss_pred H---HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHH-HHCCCCCCE---EE
Q ss_conf 0---2467798774002331452012344332106778888631876023310023335612221-101232100---11
Q gi|254780263|r 82 A---DYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELL-DISEYEIRD---LL 154 (392)
Q Consensus 82 ~---~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~-~~i~~~i~~---~l 154 (392)
+ +|++....--.+.=.+.|+|||+.++++---+.+..+...+|| +.++.||||....-.++ ......++. .+
T Consensus 204 ~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486 204 ADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred CHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCC-EEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHC
T ss_conf 14767578888726533115666303678899876999887524997-38863024455530223557540012102001
Q ss_pred EEEEEEEEEECCCCEEEEEEE
Q ss_conf 101453221023311467641
Q gi|254780263|r 155 KEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 155 ~~~~~~~~~pii~~sa~~g~~ 175 (392)
.+.-+....|.|..|+.+.+.
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~G 303 (320)
T KOG2486 283 IRGVFLVDLPWIYVSSVTSLG 303 (320)
T ss_pred CCCCEECCCCCEEEECCCCCC
T ss_conf 500041158701320434257
No 282
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.09 E-value=5.1e-06 Score=56.39 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=35.1
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 3314520123443321067788886318760233100233356122
Q gi|254780263|r 96 DGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 96 D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
|..+.|+||+.|....-.+-..+++..+-+++|+++||+|+++.+.
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~~~~~ 46 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEV 46 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 9899999687999988999999998658994899976734589899
No 283
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=98.08 E-value=3.1e-05 Score=51.50 Aligned_cols=140 Identities=23% Similarity=0.322 Sum_probs=80.9
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHH--
Q ss_conf 27999990468988789999998764442001312686869862920637899982199--08999847873024677--
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKN-- 87 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~-- 87 (392)
.+||.++|--+.||||++..|.+..-.... . .....+...+...|.......+-++ .++|++||||-.|.+-|
T Consensus 4 ~fnimvvG~sGlGKTTfiNtL~~~~~~~~~--~-~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n~~ 80 (280)
T pfam00735 4 DFTLMVVGESGLGKTTLINTLFLTDLYPER--G-IPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSN 80 (280)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCC--C-CCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHH
T ss_conf 789999779999789999998578577866--7-8884335567753488999998899899999998998423345166
Q ss_pred ----------------------HHHHH---HCCCCEEEEECCC-CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf ----------------------98774---0023314520123-443321067788886318760233100233356122
Q gi|254780263|r 88 ----------------------MITGA---TQADGAILVCAAE-DGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 88 ----------------------mi~g~---~~~D~ailvVda~-~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
+.|.- +..+++|..++.+ .|..+.-.+.+.-+... + ++|-+|-|.|...++|
T Consensus 81 ~~~~I~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~~-v-NvIPVIaKADtLT~~E 158 (280)
T pfam00735 81 CWKPIVEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMKKLHEK-V-NIIPVIAKADTLTPDE 158 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC-C-CEEEEEECCCCCCHHH
T ss_conf 6999999999999999998647566777888437999975688888868899999987144-6-5366662145589999
Q ss_pred HHHHCCCCCCEEEEEE
Q ss_conf 2110123210011101
Q gi|254780263|r 142 LLDISEYEIRDLLKEH 157 (392)
Q Consensus 142 ~~~~i~~~i~~~l~~~ 157 (392)
+.. .+..+.+-|...
T Consensus 159 l~~-~K~~I~~~l~~~ 173 (280)
T pfam00735 159 LQR-FKKRIRAEIERQ 173 (280)
T ss_pred HHH-HHHHHHHHHHHC
T ss_conf 999-999999999985
No 284
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.07 E-value=7.7e-06 Score=55.29 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=76.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 79999904689887899999987-64442001312686869862920637899982199089998478730246779877
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
+.|+++|...-|||+|+-+.... +.... + + .+-. .......+.+.+.+.|.||.|...+- -
T Consensus 1 ~KivllGd~~VGKTsl~~Rf~~~~F~~~~------~--p----t~~~-~~~~~~vdg~~~~l~i~DTaG~~~~~-----~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLE------S--P----EGGR-FKKEVLVDGQSHLLLIRDEGGAPDAQ-----F 62 (158)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCC------C--C----CCCE-EEEEEEECCEEEEEEEEECCCCCCHH-----H
T ss_conf 99999996998799999999809478744------4--6----6441-79999999999999999589983433-----3
Q ss_pred HHCCCCEEEEECCCCC-CCCCHHHHHH-HHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 4002331452012344-3321067788-8863---187602331002333561222110123210011101453221023
Q gi|254780263|r 92 ATQADGAILVCAAEDG-PKPQTREHIL-LARQ---IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 92 ~~~~D~ailvVda~~G-~~~QT~eh~~-l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
.+.+|+++||-|.+.= -+..-++-+. +.+. -.+| +|++=||-|+-..+.|. ...++.+++..+. .+.+++
T Consensus 63 ~~~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ip-iilvGnK~dl~~~~~r~-V~~~e~~~~a~~~---~~~~f~ 137 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRV-IDDARARQLCADM---KRCSYY 137 (158)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCC-EEEEEECCCCCCCCCEE-CCHHHHHHHHHHC---CCCEEE
T ss_conf 214998999998898889999999999999855978996-89998770036577614-7999999999856---998899
Q ss_pred CCEEEEEEE
Q ss_conf 311467641
Q gi|254780263|r 167 RGSALCALQ 175 (392)
Q Consensus 167 ~~sa~~g~~ 175 (392)
.+||.++.+
T Consensus 138 EtSAk~~~N 146 (158)
T cd04103 138 ETCATYGLN 146 (158)
T ss_pred EEECCCCCC
T ss_conf 901799959
No 285
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.07 E-value=5.6e-06 Score=56.14 Aligned_cols=137 Identities=26% Similarity=0.364 Sum_probs=83.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC----CHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206378999821990899984787----302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG----HADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG----H~~f~~~mi 89 (392)
+++++|.+.+|||||+..|-+....- -.|. ..+|+++ -.||||| |+.+-...+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly----------------kKTQ-----Ave~~d~--~~IDTPGEy~~~~~~Y~aL~ 59 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY----------------KKTQ-----AVEFNDK--GDIDTPGEYFEHPRWYHALI 59 (148)
T ss_pred EEEEECCCCCCCHHHHHHHHCCHHHH----------------CCCC-----EEECCCC--CCCCCCHHHHHHHHHHHHHH
T ss_conf 06875145657316788861603321----------------0000-----1330475--56588066652467899998
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 77400233145201234433210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
.-+.-+|.-++|-+|.++..+-. ...+ ..+.++.|=+|+|.|+.. ++..+. .+.+|.+.|. -|++.+|
T Consensus 60 tt~~dadvi~~v~~and~~s~f~---p~f~-~~~~k~vIgvVTK~DLae-d~dI~~----~~~~L~eaGa---~~iF~~s 127 (148)
T COG4917 60 TTLQDADVIIYVHAANDPESRFP---PGFL-DIGVKKVIGVVTKADLAE-DADISL----VKRWLREAGA---EPIFETS 127 (148)
T ss_pred HHHHCCCEEEEEECCCCCCCCCC---CCCC-CCCCCCEEEEEECCCCCC-HHHHHH----HHHHHHHCCC---CCEEEEE
T ss_conf 87611332554300268444488---4213-446665589986034664-676899----9999997487---5268872
Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 46764114445652123320344310
Q gi|254780263|r 170 ALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 170 a~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
+.. ..++..|++.|.+
T Consensus 128 ~~d----------~~gv~~l~~~L~~ 143 (148)
T COG4917 128 AVD----------NQGVEELVDYLAS 143 (148)
T ss_pred CCC----------CCCHHHHHHHHHH
T ss_conf 558----------3119999999974
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=3.6e-05 Score=51.14 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=68.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHH------CCCEEEEEEEE-------------EECCC
Q ss_conf 9999046898878999999876444200131--2686---86986------29206378999-------------82199
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKL------RGITIATAHVS-------------YETDK 70 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~------rGiTi~~~~~~-------------~~~~~ 70 (392)
|+++|--.+||||.+..|-..+..++..-+- +|+. ..||- -|+.+-..... +..++
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREEN 82 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99989999988999999999999769928999748875779999999999749859922775587999999999987568
Q ss_pred EEEEEEECCC--CHHH--HHHHH--HHHHCCCCEEEEECCCCCCCCCHHHHHHH-HHHCCCCCEEEEECCCCCCC
Q ss_conf 0899984787--3024--67798--77400233145201234433210677888-86318760233100233356
Q gi|254780263|r 71 RFYSHIDCPG--HADY--VKNMI--TGATQADGAILVCAAEDGPKPQTREHILL-ARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 71 ~~i~iiD~PG--H~~f--~~~mi--~g~~~~D~ailvVda~~G~~~QT~eh~~l-~~~lgi~~iIv~iNKmD~v~ 138 (392)
+-+-|||||| |.|. +.++. ..+..+|-.+||+||..|-. ..+.+.. -..+++..+| ++|+|...
T Consensus 83 ~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~~~I--~TKlDet~ 153 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD--AVNQAKAFNEALGITGVI--LTKLDGDA 153 (173)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHH--HHHHHHHHHHCCCCCEEE--EEEECCCC
T ss_conf 998999788878799999999999986448972157424655065--899999987427997899--97143899
No 287
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.04 E-value=6.6e-06 Score=55.68 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=57.2
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 79877400233145201234433210677888863187602331002333561222110123210011101453221023
Q gi|254780263|r 87 NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 87 ~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
.+-..+..+|..+.|+||+.+..+.-.+-...++..+- ++++++||+|+++.+.. + +...++... ..+.+
T Consensus 5 ~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K-~~ilvlNK~Dl~~~~~~-~----~~~~~~~~~----g~~~i 74 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGK-KLLIVLNKADLVPKEVL-E----KWKSIKESE----GIPVV 74 (156)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCC-CEEEEEECCCCCCHHHH-H----HHHHHHHCC----CCCEE
T ss_conf 99999987999999998788999869899999975699-39999775555898999-9----999998289----99737
Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 31146764114445652123320344310252
Q gi|254780263|r 167 RGSALCALQGTNKELGEDSIHALMKAVDTHIP 198 (392)
Q Consensus 167 ~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~ 198 (392)
.+|+..+. ....|.+.+....+
T Consensus 75 ~iSa~~~~----------g~~~L~~~i~~~~~ 96 (156)
T cd01859 75 YVSAKERL----------GTKILRRTIKELAK 96 (156)
T ss_pred EEECCCCC----------CHHHHHHHHHHHHC
T ss_conf 87012675----------79999999998602
No 288
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.04 E-value=1.7e-05 Score=53.10 Aligned_cols=170 Identities=18% Similarity=0.146 Sum_probs=90.2
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC---------------CCCHHH---HHCCCEEEEEEE--------
Q ss_conf 827999990468988789999998764442001312---------------686869---862920637899--------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI---------------DSAPEE---KLRGITIATAHV-------- 64 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~---------------D~~~~E---~~rGiTi~~~~~-------- 64 (392)
....|++-|-..+|||||+++|...+...+..-+.+ |+...+ ..-++=|-+..+
T Consensus 48 ~a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~ 127 (325)
T PRK09435 48 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 127 (325)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 82599742799986889999999999967985899997899998886101038888761479984884067788867733
Q ss_pred --------EEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf --------982199089998478730246779877400233145201234433210677888863187602331002333
Q gi|254780263|r 65 --------SYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 65 --------~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
-++--++-+.||.|-|--. +=+.-+..+|..++|.....|-.-|. ..+-.+-+.-++ +|||.|.
T Consensus 128 ~~~~~~~~~~~a~g~d~i~iETvGvGQ---~e~~v~~~~d~~~~~~~p~~GD~~Q~----~K~GImEiaDi~-vVNKaDg 199 (325)
T PRK09435 128 RKTRETMLLCEAAGFDVILVETVGVGQ---SETAVAGMVDFFLLLQLPGAGDELQG----IKKGIMELADLI-VINKADG 199 (325)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCH---HHHHHHHHCCEEEEEECCCCCCHHHH----HHHHHHHHCCEE-EEECCCC
T ss_conf 549999999997799989997067771---48899874266888835887608899----886577504268-9977675
Q ss_pred CCCHHHHHHCCCCCCEEEEEEEEE---EEEECCCCEEEEEEECCCCCCCCCCCCCHHHH
Q ss_conf 561222110123210011101453---22102331146764114445652123320344
Q gi|254780263|r 137 VDDDELLDISEYEIRDLLKEHKYS---DDTPIIRGSALCALQGTNKELGEDSIHALMKA 192 (392)
Q Consensus 137 v~~~~~~~~i~~~i~~~l~~~~~~---~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~ 192 (392)
-.-+. .+....+++..|.-.... -..|++.+||.. +......|+.+..+.+.
T Consensus 200 d~~~~-A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~---g~GI~eL~~~I~~h~~~ 254 (325)
T PRK09435 200 DNHTA-ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALE---GEGIDELWQAIEDHRAA 254 (325)
T ss_pred CCHHH-HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC---CCCHHHHHHHHHHHHHH
T ss_conf 56589-999999999998607887899999989998158---99879999999999999
No 289
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.03 E-value=4.8e-05 Score=50.36 Aligned_cols=140 Identities=19% Similarity=0.288 Sum_probs=80.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCC--EEEEEEECCCCHHHHHH--
Q ss_conf 27999990468988789999998764442001312686869862920637899982199--08999847873024677--
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK--RFYSHIDCPGHADYVKN-- 87 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~iiD~PGH~~f~~~-- 87 (392)
.+|+.++|.-..||||++..|....--... ...+.......+...|.......+-++ -++|+|||||-.|++-|
T Consensus 4 ~fnimVvG~sGlGKsTfiNtLf~~~~~~~~--~~~~~~~~~~~~t~~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n~~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSD--YPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCC--CCCCCHHHCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHH
T ss_conf 799999768999889999997478577877--778813205688825899999996399899999997688412236034
Q ss_pred -------------------H---HHHHH----CCCCEEEEECCC-CCCCCCHHHHHHHHHHC-CCCCEEEEECCCCCCCC
Q ss_conf -------------------9---87740----023314520123-44332106778888631-87602331002333561
Q gi|254780263|r 88 -------------------M---ITGAT----QADGAILVCAAE-DGPKPQTREHILLARQI-GISSIVVYMNKVDAVDD 139 (392)
Q Consensus 88 -------------------m---i~g~~----~~D~ailvVda~-~G~~~QT~eh~~l~~~l-gi~~iIv~iNKmD~v~~ 139 (392)
= -|... -++++|-.++++ .|..+.-.+ ..+.+ +.=++|-+|-|.|...+
T Consensus 82 ~~~~I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~---~mk~Ls~~vNvIPVIaKADtlT~ 158 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIE---FMKRLSKRVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH---HHHHHCCCCCEEEEEECCCCCCH
T ss_conf 099999999999999999985314578887774489999967888888799999---99996275645667851666999
Q ss_pred HHHHHHCCCCCCEEEEEE
Q ss_conf 222110123210011101
Q gi|254780263|r 140 DELLDISEYEIRDLLKEH 157 (392)
Q Consensus 140 ~~~~~~i~~~i~~~l~~~ 157 (392)
+|+.. .+..+.+-|+..
T Consensus 159 ~El~~-~K~~I~~~l~~~ 175 (276)
T cd01850 159 EELKE-FKQRIMEDIEEH 175 (276)
T ss_pred HHHHH-HHHHHHHHHHHC
T ss_conf 99999-999999999985
No 290
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.02 E-value=1.2e-05 Score=54.12 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCCCCH
Q ss_conf 7740023314520123443321067788886318-76023310023335612
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIG-ISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lg-i~~iIv~iNKmD~v~~~ 140 (392)
+.+..+|+.+.|+||+.+....-.+-..+++... -+++++++||+|+++.+
T Consensus 4 ~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~ 55 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTW 55 (157)
T ss_pred HHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHH
T ss_conf 9787599999998898888878989999987537999789999894479878
No 291
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.01 E-value=1.6e-05 Score=53.33 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC---------------CCCHHHH---HCCCEEEEEE--------
Q ss_conf 8827999990468988789999998764442001312---------------6868698---6292063789--------
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI---------------DSAPEEK---LRGITIATAH-------- 63 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~---------------D~~~~E~---~rGiTi~~~~-------- 63 (392)
++| .|+|-|-..+|||||++.|...+...+..-+.+ |+...++ .-|+=|-+..
T Consensus 50 ~a~-viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 50 NAH-VIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 983-7873179988668899999999997796789999889999878530120766776446998178426877651016
Q ss_pred --------EEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf --------998219908999847873024677987740023314520123443321067788886318760233100233
Q gi|254780263|r 64 --------VSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVD 135 (392)
Q Consensus 64 --------~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD 135 (392)
.-++--+|-+.||-|-|--.= =+.-+..+|..++|.-+.-|-.-|.. .+-.|-+--+ ++|||+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~i----K~GimEiaDi-~vINKaD 200 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGI----KAGIMEIADI-IVINKAD 200 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCC---HHHHHHHCCEEEEEECCCCCCHHHHH----HHHHHHHHHE-EEEECCC
T ss_conf 68899999999861898899981478841---55776521668999657888278888----7414654033-5672567
Q ss_pred CCCCHHHHHHCCCCCCE---EEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 35612221101232100---111014532210233114676411444565212332034431025
Q gi|254780263|r 136 AVDDDELLDISEYEIRD---LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 136 ~v~~~~~~~~i~~~i~~---~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
+-..+..+-.....+.. .-...+| ..|++.+||..|- .+.+|.+++.++.
T Consensus 201 ~~~A~~a~r~l~~al~~~~~~~~~~~W--~ppv~~t~A~~g~----------Gi~~L~~ai~~h~ 253 (323)
T COG1703 201 RKGAEKAARELRSALDLLREVWRENGW--RPPVVTTSALEGE----------GIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCEEEEEECCCC----------CHHHHHHHHHHHH
T ss_conf 265899999999999751145423688--8864676413577----------8799999999999
No 292
>KOG0780 consensus
Probab=98.01 E-value=3.2e-05 Score=51.46 Aligned_cols=123 Identities=24% Similarity=0.339 Sum_probs=80.3
Q ss_pred HHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC----CCC------CCCHH--HHHCCCEEEEEEEE-------
Q ss_conf 421038827999990468988789999998764442001----312------68686--98629206378999-------
Q gi|254780263|r 5 RYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEY----GDI------DSAPE--EKLRGITIATAHVS------- 65 (392)
Q Consensus 5 ~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~----~~~------D~~~~--E~~rGiTi~~~~~~------- 65 (392)
...+.||++ |.++|--.+||||.+..|..++.+++... +++ |.++. +|. ++-+-.+|..
T Consensus 95 ~~~K~kpsV-imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~-~iP~ygsyte~dpv~ia 172 (483)
T KOG0780 95 QPKKGKPSV-IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA-RVPFYGSYTEADPVKIA 172 (483)
T ss_pred CCCCCCCCE-EEEEECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH-CCEEEECCCCCCHHHHH
T ss_conf 615689708-9998305788630089999999846872457760224530689999876740-77068403665558999
Q ss_pred ------EECCCEEEEEEECCC-C---HHHHHHHHHHH--HCCCCEEEEECCCCCCCCCHHHHHHHHHHC----CCCCEEE
Q ss_conf ------821990899984787-3---02467798774--002331452012344332106778888631----8760233
Q gi|254780263|r 66 ------YETDKRFYSHIDCPG-H---ADYVKNMITGA--TQADGAILVCAAEDGPKPQTREHILLARQI----GISSIVV 129 (392)
Q Consensus 66 ------~~~~~~~i~iiD~PG-H---~~f~~~mi~g~--~~~D~ailvVda~~G~~~QT~eh~~l~~~l----gi~~iIv 129 (392)
|..+++-+.|+||-| | +...-+|+.-. -.+|-.|+|+||.-| |.-| ..++++ +|-- |
T Consensus 173 ~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae--~Qa~aFk~~vdvg~--v 245 (483)
T KOG0780 173 SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAE--AQARAFKETVDVGA--V 245 (483)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---HHHH--HHHHHHHHHHCCCE--E
T ss_conf 999998886397289982787301248999999999851598738999856200---7679--99998877615403--7
Q ss_pred EECCCCC
Q ss_conf 1002333
Q gi|254780263|r 130 YMNKVDA 136 (392)
Q Consensus 130 ~iNKmD~ 136 (392)
.+||||-
T Consensus 246 IlTKlDG 252 (483)
T KOG0780 246 ILTKLDG 252 (483)
T ss_pred EEEECCC
T ss_conf 9972256
No 293
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.00 E-value=2e-05 Score=52.70 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=92.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCH-------HHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199089998478730-------246
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHA-------DYV 85 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~-------~f~ 85 (392)
|||+.+|-..+|||+....|++...-... ......|-......-++.++++++|||||-- +..
T Consensus 1 LrIvLlGktGsGKSstgNtILG~~~F~s~----------~~~~svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~~~~~~~ 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK----------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS 70 (196)
T ss_pred CEEEEECCCCCCCHHHHEEECCCCCCCCC----------CCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHH
T ss_conf 98999789998615340325687666788----------99998755888888998893799996776356558979999
Q ss_pred HHHHHHHH----CCCCEEEEECCCCCCCCCH-HHHH-HHHHHCC---CCCEEEEECCCCCCCCHH---HHHHCCCCCCEE
Q ss_conf 77987740----0233145201234433210-6778-8886318---760233100233356122---211012321001
Q gi|254780263|r 86 KNMITGAT----QADGAILVCAAEDGPKPQT-REHI-LLARQIG---ISSIVVYMNKVDAVDDDE---LLDISEYEIRDL 153 (392)
Q Consensus 86 ~~mi~g~~----~~D~ailvVda~~G~~~QT-~eh~-~l~~~lg---i~~iIv~iNKmD~v~~~~---~~~~i~~~i~~~ 153 (392)
+++.+.++ .+++.|||+.... +.+. ++-+ .+.+.+| .++.||..|--|...... ........++.+
T Consensus 71 ~ei~~~~~l~~pGpHa~LLVi~~~r--fT~ee~~~v~~i~~~FGe~~~~~tivLFT~~D~L~~~sie~~i~~~~~~L~~l 148 (196)
T cd01852 71 KEIVRCLSLSAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL 148 (196)
T ss_pred HHHHHHHHHCCCCCEEEEEEEECCC--CCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCCCHHHHHHHCCHHHHHH
T ss_conf 9999999843899739999997898--89899999999999977786852899996540116886999987346999999
Q ss_pred EEEEEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCHHHHHHCCCC
Q ss_conf 110145322102331146764114-445652123320344310252
Q gi|254780263|r 154 LKEHKYSDDTPIIRGSALCALQGT-NKELGEDSIHALMKAVDTHIP 198 (392)
Q Consensus 154 l~~~~~~~~~pii~~sa~~g~~~~-n~~~~~~~~~~Ll~~i~~~~~ 198 (392)
+++.+-. ...++.. +..........||+.+++.+.
T Consensus 149 i~kCg~R----------y~~fnN~~~~~~~~~QV~eLl~kIe~mv~ 184 (196)
T cd01852 149 LEKCGGR----------YVAFNNKAKGEEQEQQVKELLAKVESMVK 184 (196)
T ss_pred HHHHCCE----------EEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9985998----------99986789975138999999999999999
No 294
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.99 E-value=7.1e-05 Score=49.29 Aligned_cols=122 Identities=21% Similarity=0.304 Sum_probs=74.5
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHCCCE--EEEEE-----------------E
Q ss_conf 3882799999046898878999999876444200131--2686---869862920--63789-----------------9
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLRGIT--IATAH-----------------V 64 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~rGiT--i~~~~-----------------~ 64 (392)
.++...|-.+|==.+||||.++.|..++.+.+..-.- .|.. .-|+-+-.. +++-+ .
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 89985899981567974868999999999749945898505678689999999998609853167788997999999999
Q ss_pred EEECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHH----HHCCCCCEEEEECCC
Q ss_conf 98219908999847873----0246779--8774002331452012344332106778888----631876023310023
Q gi|254780263|r 65 SYETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLA----RQIGISSIVVYMNKV 134 (392)
Q Consensus 65 ~~~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~----~~lgi~~iIv~iNKm 134 (392)
++..+++-+-|+||.|- ++.+.+| |..+..+|-.||||||..|-. - ...| ..+++. -+| ++||
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A--~~~A~aF~e~l~it-GvI-lTKl 249 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---A--VNTAKAFNEALGIT-GVI-LTKL 249 (451)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH---H--HHHHHHHHHHCCCC-EEE-EECC
T ss_conf 999749988999688733030999999999985539874899876444567---8--99999986626986-499-9714
Q ss_pred CCC
Q ss_conf 335
Q gi|254780263|r 135 DAV 137 (392)
Q Consensus 135 D~v 137 (392)
|.-
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred CCC
T ss_conf 678
No 295
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.97 E-value=9.4e-06 Score=54.73 Aligned_cols=154 Identities=17% Similarity=0.210 Sum_probs=80.8
Q ss_pred HHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC----CCC-CHHHHHC---CC---EEEEEEEE-----E-
Q ss_conf 242103882799999046898878999999876444200131----268-6869862---92---06378999-----8-
Q gi|254780263|r 4 KRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD----IDS-APEEKLR---GI---TIATAHVS-----Y- 66 (392)
Q Consensus 4 ~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~----~D~-~~~E~~r---Gi---Ti~~~~~~-----~- 66 (392)
....+.++.+.|.+.|.+.||||||+.++++.+.++- ..+. +-+ .+.|+-+ |. .+.++..+ +
T Consensus 5 ~~a~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~-~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~ 83 (202)
T COG0378 5 RLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEY-KIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMN 83 (202)
T ss_pred HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC-CEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
T ss_conf 5687258648999617998678999999999997527-768996404006559999737798068740387658867889
Q ss_pred ---------ECCCEEEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf ---------219908999847873024677987740023-3145201234433210677888863187602331002333
Q gi|254780263|r 67 ---------ETDKRFYSHIDCPGHADYVKNMITGATQAD-GAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 67 ---------~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D-~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
..+.--+-||-.-| .....- .--..| ..+.|||..+|..---+=+-.+-+ -.+ ++|||.|+
T Consensus 84 ~~ai~~l~~~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~----aDl-lVInK~DL 154 (202)
T COG0378 84 LEAIEELVLDFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----ADL-LVINKTDL 154 (202)
T ss_pred HHHHHHHHHCCCCCCEEEEECCC--CEECCC--CCCHHHCEEEEEEECCCCCCCCCCCCCCEEE----EEE-EEEEHHHH
T ss_conf 99999986317767789992376--432446--8041304699999878888876557996467----418-99856773
Q ss_pred CCCHH-HHHHCCCCCCEEEEEEEEEEEEECCCCEEEEE
Q ss_conf 56122-21101232100111014532210233114676
Q gi|254780263|r 137 VDDDE-LLDISEYEIRDLLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 137 v~~~~-~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g 173 (392)
+.+-. ..+......+. .+++.||+..|..+|
T Consensus 155 a~~v~~dlevm~~da~~------~np~~~ii~~n~ktg 186 (202)
T COG0378 155 APYVGADLEVMARDAKE------VNPEAPIIFTNLKTG 186 (202)
T ss_pred HHHHCCCHHHHHHHHHH------HCCCCCEEEEECCCC
T ss_conf 87728669999999998------499998899847878
No 296
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=97.96 E-value=6.5e-06 Score=55.75 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=74.3
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 22100001100000001355445430148742453489679995068743212541210012114432100136664112
Q gi|254780263|r 200 PQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRG 279 (392)
Q Consensus 200 p~~~~~~p~r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkg 279 (392)
|...+.---+.-|..+|+++..|+|+..+|.+|.++.+..+.++-.+.--...++.||..++++|+++..|.-||+.|++
T Consensus 511 p~~~E~~iG~AeV~~vF~~sk~g~IAGc~V~~G~i~r~~~vRVlR~~~vI~eG~I~SLrr~KddVkEV~~G~ECGI~l~~ 590 (610)
T PRK12312 511 PVYEEVVIGQAEVRKLFKHSKVGTIAGCYVTSGKVKRNAKVRVIRNGKVIHEGKIASLKHLKDDVKEVEKGKECGIHIKN 590 (610)
T ss_pred CCEEEEEEEEEEEEEEEECCCCEEEEEEEEEECEEEECCEEEEEECCEEEEEEEEHHHHHCCCCCCHHCCCCCCEEEECC
T ss_conf 72479998999988888648861789999974689719848998899999971677740201021120589532488327
Q ss_pred CCCCEEECHHEEE
Q ss_conf 4543220211773
Q gi|254780263|r 280 VNRADVPRGRVVC 292 (392)
Q Consensus 280 i~~~di~rGdvl~ 292 (392)
..|++.||+|-
T Consensus 591 --f~di~~GDiIE 601 (610)
T PRK12312 591 --FNDIKENDIIE 601 (610)
T ss_pred --CCCCCCCCEEE
T ss_conf --35687698999
No 297
>KOG0090 consensus
Probab=97.96 E-value=8.5e-06 Score=55.00 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=74.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.+-++|--|+|||+|.=.|+.....- .--+|.-.-+.|.+.+...++||.|||...-...+.=..
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~---------------TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~ 104 (238)
T KOG0090 40 AVLLVGLSDSGKTSLFTQLITGSHRG---------------TVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLK 104 (238)
T ss_pred CEEEEECCCCCCEEEEEEHHCCCCCC---------------EEEEECCCEEEEEECCCCEEEEECCCCHHHHHHHHHHCC
T ss_conf 68999327898335542001387367---------------032104661357636862388757995889999998734
Q ss_pred ---CCCCEEEEECCCCCCCCC--HHHHHH-H-HHH---CCCCCEEEEECCCCCCCC--H-HHHHHCCCCCCEEEE
Q ss_conf ---023314520123443321--067788-8-863---187602331002333561--2-221101232100111
Q gi|254780263|r 94 ---QADGAILVCAAEDGPKPQ--TREHIL-L-ARQ---IGISSIVVYMNKVDAVDD--D-ELLDISEYEIRDLLK 155 (392)
Q Consensus 94 ---~~D~ailvVda~~G~~~Q--T~eh~~-l-~~~---lgi~~iIv~iNKmD~v~~--~-~~~~~i~~~i~~~l~ 155 (392)
.+-+.++|||+..-...- +.|.++ + ... -..+++.+|-||-|+... . ...+..+.|+..+..
T Consensus 105 ~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~ 179 (238)
T KOG0090 105 HNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRE 179 (238)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 655221599998332246006799999999998601234799889995552232138599999999999999998
No 298
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.90 E-value=1.8e-05 Score=53.01 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred CCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf 873-0246779877400233145201234433210677888863187602331002333561222110123210011101
Q gi|254780263|r 79 PGH-ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH 157 (392)
Q Consensus 79 PGH-~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~ 157 (392)
||| ....+++-..+..+|..|.|+||+.|....-.+ +.+.++-+++|+++||+|+++.+...+ ...++...
T Consensus 3 pghm~k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~---l~~~~~~K~~ilV~NK~DL~~~~~~~~-----~~~~~~~~ 74 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPL---LEKILGNKPRIIVLNKADLADPKKTKK-----WLKYFESK 74 (171)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH---HHHHHCCCCEEEEEECCCCCCHHHHHH-----HHHHHHCC
T ss_conf 5489999999999998699999999898888765289---999976898899985555589789999-----99999807
Q ss_pred EEEEEEECCCCEEEEE
Q ss_conf 4532210233114676
Q gi|254780263|r 158 KYSDDTPIIRGSALCA 173 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g 173 (392)
..+++++|+..+
T Consensus 75 ----~~~~~~~sa~~~ 86 (171)
T cd01856 75 ----GEKVLFVNAKSG 86 (171)
T ss_pred ----CCCEEEEECCCC
T ss_conf ----996799842266
No 299
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.90 E-value=7.1e-05 Score=49.30 Aligned_cols=81 Identities=10% Similarity=0.197 Sum_probs=69.5
Q ss_pred CEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECH
Q ss_conf 00000001355445430148742453489679995068743212541210012114432100136664112454322021
Q gi|254780263|r 209 LMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRG 288 (392)
Q Consensus 209 r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rG 288 (392)
+.-|..+|+++- |+|+..+|.+|.++.+..+.++-.+..-...++.||..|+.+|.++..|.-||+.|.+ ..|++.|
T Consensus 679 ~AeVr~vF~isK-g~IAGc~Vt~G~I~r~~~vRViR~~~vI~eG~I~SLKRfKddVkEV~~G~ECGI~l~~--fnDik~G 755 (770)
T CHL00189 679 EAEVQTVFSLAK-SFVAGCRVTSGKILKNAHIKVIRKNKLIFEGDINSLKRVKEDVEEVQEGNECGIFIEE--FQLWQSG 755 (770)
T ss_pred EEEEEEEEECCC-CEEEEEEEEECEEECCCCEEEEECCEEEEEEEEHHHHCCCCCCCHHCCCCCCEEECCC--CCCCCCC
T ss_conf 999999995289-6698999981789639927997699899980767750032020231599415377048--3437779
Q ss_pred HEEE
Q ss_conf 1773
Q gi|254780263|r 289 RVVC 292 (392)
Q Consensus 289 dvl~ 292 (392)
|+|-
T Consensus 756 DiIE 759 (770)
T CHL00189 756 DKIE 759 (770)
T ss_pred CEEE
T ss_conf 8999
No 300
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.89 E-value=8.4e-05 Score=48.84 Aligned_cols=140 Identities=21% Similarity=0.319 Sum_probs=86.6
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH-HHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHHHH
Q ss_conf 827999990468988789999998764442001312686869-8629206378999821990--8999847873024677
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEE-KLRGITIATAHVSYETDKR--FYSHIDCPGHADYVKN 87 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E-~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~~~ 87 (392)
-.+||.++|-...||||++..|.+....... ..|....+ .+.++.|....+..+-++. .+|+|||||--||+-|
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~---~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDET---EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCC
T ss_conf 9638999627887555788765676525777---7557666667762588864316604874898888615886565464
Q ss_pred -------------HH-----------HHHH----CCCCEEEEECC-CCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf -------------98-----------7740----02331452012-3443321067788886318760233100233356
Q gi|254780263|r 88 -------------MI-----------TGAT----QADGAILVCAA-EDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 88 -------------mi-----------~g~~----~~D~ailvVda-~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
+. |... -+++||--+.. ..|+.++-.+.+.-+. ..=++|-+|-|.|.-.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls--~~vNlIPVI~KaD~lT 176 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS--KRVNLIPVIAKADTLT 176 (373)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH--CCCCEEEEEECCCCCC
T ss_conf 10179999999999999999864345566544682489999846898878788899999985--3367565662466589
Q ss_pred CHHHHHHCCCCCCEEEEE
Q ss_conf 122211012321001110
Q gi|254780263|r 139 DDELLDISEYEIRDLLKE 156 (392)
Q Consensus 139 ~~~~~~~i~~~i~~~l~~ 156 (392)
.+|+.+ .+..+.+.+.+
T Consensus 177 ~~El~~-~K~~I~~~i~~ 193 (373)
T COG5019 177 DDELAE-FKERIREDLEQ 193 (373)
T ss_pred HHHHHH-HHHHHHHHHHH
T ss_conf 999999-99999999998
No 301
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.87 E-value=0.00011 Score=48.19 Aligned_cols=125 Identities=23% Similarity=0.336 Sum_probs=72.5
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC--H-HHH------HCCCEEEEE----------EEE
Q ss_conf 103882799999046898878999999876444200131--2686--8-698------629206378----------999
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA--P-EEK------LRGITIATA----------HVS 65 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~--~-~E~------~rGiTi~~~----------~~~ 65 (392)
...||++ |.++|==.+||||.++.|..++.+.++...- .|.. . -|+ +-|+..-.. +..
T Consensus 93 ~~~kP~V-im~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~i~~~a 171 (433)
T PRK00771 93 ILLKPQT-ILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFYGDPKEKDAVKIVKEG 171 (433)
T ss_pred CCCCCEE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 6689858-999737889789999999999997799467850678836899999999986388731788999999999999
Q ss_pred E-ECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 8-219908999847873----0246779--8774002331452012344332--10677888863187602331002333
Q gi|254780263|r 66 Y-ETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 66 ~-~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
. ...++-+-|+||.|- ++.+.++ +.-+..+|-.+||+||..|-.. |.+ .--..+++. .|| ++|+|.
T Consensus 172 ~~~~k~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~---~F~~~~~i~-gvI-lTKlDg 246 (433)
T PRK00771 172 LEKLKKVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIGQQASEQAK---AFKEAVGIG-GII-ITKLDG 246 (433)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHH---HHHHHCCCC-EEE-EECCCC
T ss_conf 998456988999776521040999999999987757976899865442267899999---998753887-379-972567
Q ss_pred C
Q ss_conf 5
Q gi|254780263|r 137 V 137 (392)
Q Consensus 137 v 137 (392)
-
T Consensus 247 d 247 (433)
T PRK00771 247 T 247 (433)
T ss_pred C
T ss_conf 8
No 302
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.86 E-value=8.1e-05 Score=48.95 Aligned_cols=124 Identities=26% Similarity=0.351 Sum_probs=70.4
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHHHC------CCEEEEEEE---------EE-E
Q ss_conf 3882799999046898878999999876444200131--2686---869862------920637899---------98-2
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEKLR------GITIATAHV---------SY-E 67 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~~r------GiTi~~~~~---------~~-~ 67 (392)
.+|+ .|.++|--.+||||.++.|-..+.+.++.-+- +|+. ..||-+ |+.+-.... .| +
T Consensus 73 ~~~~-vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~ 151 (270)
T PRK06731 73 KEVQ-TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHH
T ss_conf 9981-899988898988999999999998679908999838888889999999999819953545887899999999999
Q ss_pred CCCEEEEEEECCCC----HHHHHHHHH--HHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 19908999847873----024677987--74002331452012344332--1067788886318760233100233356
Q gi|254780263|r 68 TDKRFYSHIDCPGH----ADYVKNMIT--GATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 68 ~~~~~i~iiD~PGH----~~f~~~mi~--g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
..++.+-||||+|. .+.+.+|.. .....|..+||+||+.+-+. |..+. -+.+++..+| +||||...
T Consensus 152 ~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~~~~~~~~~~~~---f~~~~i~gvI--lTKlD~ta 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN---FKDIHIDGIV--FTKFDETA 225 (270)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHH---HCCCCCCEEE--EECCCCCC
T ss_conf 76999999979998714699999999986063898799998687776999999998---0779998899--96535899
No 303
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=97.83 E-value=1.9e-05 Score=52.85 Aligned_cols=141 Identities=26% Similarity=0.277 Sum_probs=78.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEE-CCCCHHHHHHH
Q ss_conf 79999904689887899999987644---420013126868698629206378999821990899984-78730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE---EKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHID-CPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~---~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD-~PGH~~f~~~m 88 (392)
=||.++|.-++|||||+.+|.+.-.. .+-++..+|-.+++|+- .....+=++| -|+|...+|..
T Consensus 46 K~ILVLGd~~sGKttLi~kLQg~ed~kkG~gLeY~YldV~DedrDd------------~tRl~VWiLDgd~~~~~LLKfa 113 (490)
T pfam05783 46 KNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYLNVHDEDRDD------------QTRCNVWILDGDLYHKGLLKFA 113 (490)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCC------------CCCEEEEEECCCCCHHHHHCCC
T ss_conf 7289977898755899988527443466875433888512465441------------1002358844870111243157
Q ss_pred HHHHHCCCC-EEEEECCCCCCC--CCH-------HHHH------------------------------------------
Q ss_conf 877400233-145201234433--210-------6778------------------------------------------
Q gi|254780263|r 89 ITGATQADG-AILVCAAEDGPK--PQT-------REHI------------------------------------------ 116 (392)
Q Consensus 89 i~g~~~~D~-ailvVda~~G~~--~QT-------~eh~------------------------------------------ 116 (392)
+.--+..|. ++||+|-.+.+. .|- ++|+
T Consensus 114 Ln~~si~~TlIvI~lDms~PW~im~qL~~Wi~VL~~hi~sL~id~ee~~el~e~l~~~wq~Y~ep~d~~~gs~~~r~~~~ 193 (490)
T pfam05783 114 LNAESLADTLVIFVVDMSRPWTIMESLQKWASVLREHIDKLKIPPEEMRELEQRLVKDFQEYVEPGDDLPGSPQRRTPRL 193 (490)
T ss_pred CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 88545020289999725774789999999999999999874899999999999999999864242335788753357777
Q ss_pred ---------------HHHHHCCCCCEEEEECCCCCCC-------C-HHHHHHCCCCCCEEEEEEEEEEEEECCCCEE
Q ss_conf ---------------8886318760233100233356-------1-2221101232100111014532210233114
Q gi|254780263|r 117 ---------------LLARQIGISSIVVYMNKVDAVD-------D-DELLDISEYEIRDLLKEHKYSDDTPIIRGSA 170 (392)
Q Consensus 117 ---------------~l~~~lgi~~iIv~iNKmD~v~-------~-~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa 170 (392)
.+-..||+| ++|+++|.|.+. | +|-|+.+..-++.++-++|. ..|++|.
T Consensus 194 s~~~d~~v~LPLgeg~Lt~NLGiP-IvVV~tKsD~me~LEKe~dy~dEhFDfIqq~LR~fCLqyGA----ALiYTSv 265 (490)
T pfam05783 194 SGSDDDSVLLPLGENVLTHNLGIP-VVVVCTKCDAMSVLEKEHDYRDEHFDFIQSHIRRFCLQYGA----ALIYTSV 265 (490)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC----EEEEEEC
T ss_conf 776666421468987100047987-79999464188887651262067789999999999986196----5788523
No 304
>KOG0076 consensus
Probab=97.79 E-value=4.5e-05 Score=50.54 Aligned_cols=169 Identities=21% Similarity=0.221 Sum_probs=96.3
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHH
Q ss_conf 10388279999904689887899999987644420013126868698629206378999821990899984787302467
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVK 86 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~ 86 (392)
.-+|+.-++.+.|--.|||||++.++-..+.+.-.+ ++ +.+.. -|.-+-....+-.+-.+.|.|.-|.+.. +
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~---l~--~~ki~--~tvgLnig~i~v~~~~l~fwdlgGQe~l-r 83 (197)
T KOG0076 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGG---LN--PSKIT--PTVGLNIGTIEVCNAPLSFWDLGGQESL-R 83 (197)
T ss_pred HHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCC---CC--HHHEE--CCCCEEECCEEECCCEEEEEECCCHHHH-H
T ss_conf 750320310024244578520898877788765168---88--88810--1224031316412541677886780878-9
Q ss_pred HHHHHH-HCCCCEEEEECCCCCC-C----CCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE---EE
Q ss_conf 798774-0023314520123443-3----2106778888631876023310023335612221101232100111---01
Q gi|254780263|r 87 NMITGA-TQADGAILVCAAEDGP-K----PQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLK---EH 157 (392)
Q Consensus 87 ~mi~g~-~~~D~ailvVda~~G~-~----~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~---~~ 157 (392)
++-.+. +.+++.+.+|||..-. + .+-+....-=...|+| +.+..||-|+-+..+.. +++..+. ..
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~~~~~-----El~~~~~~~e~~ 157 (197)
T KOG0076 84 SLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNAMEAA-----ELDGVFGLAELI 157 (197)
T ss_pred HHHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC-HHHHCCHHHHHHHHHHH-----HHHHHHHHHHHC
T ss_conf 999999997263477641777788888799999999878762871-54340043303056689-----898774266536
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 453221023311467641144456521233203443102
Q gi|254780263|r 158 KYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
. ..+.|+.|+||+.|- +. .+.+.++...+...
T Consensus 158 ~-~rd~~~~pvSal~ge---gv---~egi~w~v~~~~kn 189 (197)
T KOG0076 158 P-RRDNPFQPVSALTGE---GV---KEGIEWLVKKLEKN 189 (197)
T ss_pred C-CCCCCCCCCHHHHCC---CH---HHHHHHHHHHHHHC
T ss_conf 8-865764421454055---67---78899999998623
No 305
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.78 E-value=0.00016 Score=47.04 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=70.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHHHCCCC-------------------------CC--CCHH----HH------H
Q ss_conf 99999046898878999999876--444200131-------------------------26--8686----98------6
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYY--SEEKKEYGD-------------------------ID--SAPE----EK------L 54 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~--~~~~~~~~~-------------------------~D--~~~~----E~------~ 54 (392)
.|+++|+=-+|||+++.+|++.. -....-+.+ .| ..+. +. .
T Consensus 28 qiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~ 107 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTN 107 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 48998887875899999987887555689727644069997338865124774378634898999999999887532678
Q ss_pred CCCEEEEEEEEEEC-CCEEEEEEECCCC------------HHHHHHHHHH-HHCCCCEEEE-ECCCCCCCCCHHHHHHHH
Q ss_conf 29206378999821-9908999847873------------0246779877-4002331452-012344332106778888
Q gi|254780263|r 55 RGITIATAHVSYET-DKRFYSHIDCPGH------------ADYVKNMITG-ATQADGAILV-CAAEDGPKPQTREHILLA 119 (392)
Q Consensus 55 rGiTi~~~~~~~~~-~~~~i~iiD~PGH------------~~f~~~mi~g-~~~~D~ailv-Vda~~G~~~QT~eh~~l~ 119 (392)
.|++-+.-...+.. +--.++|||.||- ..-+++|+.. ++..+.-||. ++|..-+ .|.+.+.+|
T Consensus 108 ~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~--anq~~l~lA 185 (240)
T smart00053 108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL--ANSDALKLA 185 (240)
T ss_pred CCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH--HHHHHHHHH
T ss_conf 876788559999479998854414754124678998567999999999998479880699984078567--661999999
Q ss_pred HHC---CCCCEEEEECCCCCCCCH
Q ss_conf 631---876023310023335612
Q gi|254780263|r 120 RQI---GISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 120 ~~l---gi~~iIv~iNKmD~v~~~ 140 (392)
+.+ |-+. |-++||.|++++.
T Consensus 186 r~~Dp~g~RT-iGVlTKpDl~~~g 208 (240)
T smart00053 186 KEVDPQGERT-IGVITKLDLMDEG 208 (240)
T ss_pred HHHCCCCCEE-EEEECCCCCCCCC
T ss_conf 9719999828-9997353345777
No 306
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.77 E-value=3.5e-05 Score=51.17 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=48.5
Q ss_pred CCCEEEEEEECCCCCCCEEEEEECCCC------CCCEEEECCCCC----CCCCCCCCCCHHHHHHHCCCCCCEEECHHEE
Q ss_conf 543014874245348967999506874------321254121001----2114432100136664112454322021177
Q gi|254780263|r 222 GTVVTGCIKRGRIKAGSDVEIIGMGGK------KLKVKCTDVEMF----RKKLDEAIAGDNVGLLLRGVNRADVPRGRVV 291 (392)
Q Consensus 222 G~Vv~GrV~sG~l~~Gd~i~i~p~~~~------~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lkgi~~~di~rGdvl 291 (392)
.-.++|||.||+|++||+++++.++-. ....+|..++.. ..++++|.||++|++ .|++.. +.+.-+|
T Consensus 16 ~F~af~RV~SGtl~~G~~V~Vlg~~y~~~~~~d~~~~~V~~l~l~~Gr~~~~v~~v~AGniv~I--~Gld~~-i~KsaTi 92 (94)
T cd04090 16 SFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--KGIDSS-IVKTATI 92 (94)
T ss_pred EEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEEECCCEEEECCCCCCCCEEEE--ECCCCC-EEEEEEE
T ss_conf 8999999988678489999997999898985410498966899962114879782699889999--824003-8967996
Q ss_pred E
Q ss_conf 3
Q gi|254780263|r 292 C 292 (392)
Q Consensus 292 ~ 292 (392)
|
T Consensus 93 s 93 (94)
T cd04090 93 T 93 (94)
T ss_pred E
T ss_conf 1
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=97.75 E-value=0.00028 Score=45.64 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=71.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHH-HHHC----CCCCCCCH-HHHHC--CCEEEEEE-----------------E
Q ss_conf 88279999904689887899999987644-4200----13126868-69862--92063789-----------------9
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSE-EKKE----YGDIDSAP-EEKLR--GITIATAH-----------------V 64 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~-~~~~----~~~~D~~~-~E~~r--GiTi~~~~-----------------~ 64 (392)
+|++ |.++|==.+||||.++.|..++.+ ..+. .+++.|-. -|+-+ |-.+++-+ .
T Consensus 99 ~p~V-Im~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~~v~~~~~~~~~dp~~ia~~a~~ 177 (453)
T PRK10867 99 PPAV-VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (453)
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHH
T ss_conf 9969-999746888518589999999997389837985588770589999999998519804367889988999999999
Q ss_pred EEECCCEEEEEEECCCC----HHHHHHH--HHHHHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 98219908999847873----0246779--8774002331452012344332--10677888863187602331002333
Q gi|254780263|r 65 SYETDKRFYSHIDCPGH----ADYVKNM--ITGATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 65 ~~~~~~~~i~iiD~PGH----~~f~~~m--i~g~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
++..+++-+-|+||.|- ++.+.++ +.-+..+|-.+||+||..|-.. |.+ .--..+++.- +| ++|+|.
T Consensus 178 ~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~GQ~a~~~a~---~F~~~~~~~g-vI-lTKlDg 252 (453)
T PRK10867 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANTAK---AFNEALPLTG-VV-LTKVDG 252 (453)
T ss_pred HHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHH---HHHHHCCCCE-EE-EECCCC
T ss_conf 999779999999787601210888999999987637871379743223566899999---9998559870-78-750467
No 308
>KOG1547 consensus
Probab=97.74 E-value=0.00028 Score=45.61 Aligned_cols=140 Identities=19% Similarity=0.271 Sum_probs=78.7
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE--EEEEEEECCC--EEEEEEECCCC-----
Q ss_conf 82799999046898878999999876444200131268686986292063--7899982199--08999847873-----
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA--TAHVSYETDK--RFYSHIDCPGH----- 81 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~--~~i~iiD~PGH----- 81 (392)
=..||.++|.-..|||||+..|....-... +..|.. +|.- -.|.. +..-..+-++ -++|.|||||.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~---s~~~~~-~~p~-pkT~eik~~thvieE~gVklkltviDTPGfGDqIn 119 (336)
T KOG1547 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDS---SSSDNS-AEPI-PKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN 119 (336)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHC---CCCCCC-CCCC-CCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCCC
T ss_conf 725799980687771156788888887612---589765-6755-64278875344533066589988834898533337
Q ss_pred ----------------HHHHHHHHHHHHC-------CCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ----------------0246779877400-------233145201234-4332106778888631876023310023335
Q gi|254780263|r 82 ----------------ADYVKNMITGATQ-------ADGAILVCAAED-GPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 82 ----------------~~f~~~mi~g~~~-------~D~ailvVda~~-G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
+.|+++-+..... +++++.-|.++- ...|--.|.+ -++..+-++|-+|-|.|..
T Consensus 120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDiefl--krLt~vvNvvPVIakaDtl 197 (336)
T KOG1547 120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFL--KRLTEVVNVVPVIAKADTL 197 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHH--HHHHHHHEEEEEEEECCCC
T ss_conf 53206779999999999999999867765138875478999996798875670449999--9886552043357506644
Q ss_pred CCHHHHHHCCCCCCEEEEEEE
Q ss_conf 612221101232100111014
Q gi|254780263|r 138 DDDELLDISEYEIRDLLKEHK 158 (392)
Q Consensus 138 ~~~~~~~~i~~~i~~~l~~~~ 158 (392)
.-+|+.+ .++.+++-|...+
T Consensus 198 TleEr~~-FkqrI~~el~~~~ 217 (336)
T KOG1547 198 TLEERSA-FKQRIRKELEKHG 217 (336)
T ss_pred CHHHHHH-HHHHHHHHHHHCC
T ss_conf 2777999-9999999999659
No 309
>KOG0394 consensus
Probab=97.74 E-value=0.0002 Score=46.55 Aligned_cols=150 Identities=20% Similarity=0.191 Sum_probs=87.4
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE--EEEECCCEEEE--EEECCCCHH
Q ss_conf 03882799999046898878999999876444200131268686986292063789--99821990899--984787302
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH--VSYETDKRFYS--HIDCPGHAD 83 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~~~i~--iiD~PGH~~ 83 (392)
+++..|.+.++|.-.+|||+|+.+.... +-.++.--||-.-| ..+.-+++.++ |=||.|.+.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~--------------kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQER 70 (210)
T KOG0394 5 RKRTLLKVIILGDSGVGKTSLMNQYVNK--------------KFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQER 70 (210)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH--------------HHHHHHCCCCCCEEEEEEEEECCEEEEEEEEECCCHHH
T ss_conf 6664359999379984478999999888--------------88887432000110322799867699999873311777
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCH-----HHHHHHHHHC---CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE
Q ss_conf 46779877400233145201234433210-----6778888631---876023310023335612221101232100111
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQT-----REHILLARQI---GISSIVVYMNKVDAVDDDELLDISEYEIRDLLK 155 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT-----~eh~~l~~~l---gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~ 155 (392)
|-.==..--+.+|+++||-|...--.-.+ .|.+..+.-. .-| +|+.=||+|.-+.+.+.. ....-....+
T Consensus 71 FqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~V-S~~~Aq~WC~ 148 (210)
T KOG0394 71 FQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQV-SEKKAQTWCK 148 (210)
T ss_pred HHHCCCCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCC-EEEECCCCCCCCCCCCEE-EHHHHHHHHH
T ss_conf 63146411247754789832686466511878999998746879977566-799755114777750120-1889999998
Q ss_pred EEEEEEEEECCCCEEEEEEEC
Q ss_conf 014532210233114676411
Q gi|254780263|r 156 EHKYSDDTPIIRGSALCALQG 176 (392)
Q Consensus 156 ~~~~~~~~pii~~sa~~g~~~ 176 (392)
. +.++|.+.+||..+.|.
T Consensus 149 s---~gnipyfEtSAK~~~NV 166 (210)
T KOG0394 149 S---KGNIPYFETSAKEATNV 166 (210)
T ss_pred H---CCCCEEEEECCCCCCCH
T ss_conf 6---59950687102434468
No 310
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.73 E-value=2.4e-05 Score=52.19 Aligned_cols=81 Identities=19% Similarity=0.348 Sum_probs=69.5
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHH
Q ss_conf 00000013554454301487424534896799950687432125412100121144321001366641124543220211
Q gi|254780263|r 210 MHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR 289 (392)
Q Consensus 210 ~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGd 289 (392)
.-|..+|+++..|.|+-.+|.+|.++.+..+.++-.+..-...++.|+..+.++++++..|+-||+.|.+ ..|+..||
T Consensus 3 a~V~~vF~~~k~~~IAGc~V~~G~i~~~~~vrv~R~~~~i~~G~I~sLk~~K~~V~eV~~G~ECGi~l~~--~~d~~~GD 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLEN--FNDIKVGD 80 (84)
T ss_pred EEEEEEEECCCCEEEEEEEEEECEEECCCEEEEEECCEEEEEEEEHHHHHCCCCCCEECCCCEEEEEECC--CCCCCCCC
T ss_conf 9999999989960898999980999729959999899999983666560034355787688186799578--47677798
Q ss_pred EEE
Q ss_conf 773
Q gi|254780263|r 290 VVC 292 (392)
Q Consensus 290 vl~ 292 (392)
+|-
T Consensus 81 ~ie 83 (84)
T cd03692 81 IIE 83 (84)
T ss_pred EEE
T ss_conf 980
No 311
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.72 E-value=5.6e-05 Score=49.95 Aligned_cols=57 Identities=18% Similarity=0.249 Sum_probs=38.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
.+.++++++|....|||||+.+|.+... ..+.. .-|.|.+...... +..+.++||||
T Consensus 113 ~~~~~v~ivG~PNVGKSSlIN~L~~~~~------~~v~~-----~pGtTr~~~~i~~---~~~~~liDTPG 169 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKV------AKVGN-----KPGVTKGIQWIKI---SPGIYLLDTPG 169 (171)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCE------EEECC-----CCCCCCCEEEEEE---CCCEEEEECCC
T ss_conf 7771799973798761799999748863------88769-----8985326679996---89999997998
No 312
>KOG0077 consensus
Probab=97.70 E-value=0.0002 Score=46.45 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=68.0
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 82799999046898878999999876444200131268686986292063789998219908999847873024677987
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
++-.+.+.|==+||||||+..|-. .+-++.....--+.|| +.-.+-+++-+|.-||..=-+---.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKd--Drl~qhvPTlHPTSE~-------------l~Ig~m~ftt~DLGGH~qArr~wkd 83 (193)
T KOG0077 19 KFGKLLFLGLDNAGKTTLLHMLKD--DRLGQHVPTLHPTSEE-------------LSIGGMTFTTFDLGGHLQARRVWKD 83 (193)
T ss_pred CCCEEEEEEECCCCHHHHHHHHCC--CCCCCCCCCCCCCHHH-------------HEECCCEEEEECCCCHHHHHHHHHH
T ss_conf 675189995157752668988733--0011357876897677-------------3135715899725667999988887
Q ss_pred HHHCCCCEEEEECCCC-CCCCCHHHHHHHHH----HCCCCCEEEEECCCCCCCC
Q ss_conf 7400233145201234-43321067788886----3187602331002333561
Q gi|254780263|r 91 GATQADGAILVCAAED-GPKPQTREHILLAR----QIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 91 g~~~~D~ailvVda~~-G~~~QT~eh~~l~~----~lgi~~iIv~iNKmD~v~~ 139 (392)
=...+|+.+.+|||-+ .-+...++++..+- ...+|. .+..||+|....
T Consensus 84 yf~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~-lilgnKId~~~a 136 (193)
T KOG0077 84 YFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPF-LILGNKIDIPYA 136 (193)
T ss_pred HHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCC-EEECCCCCCCCC
T ss_conf 87654316853011217776778999998876887715861-011165568873
No 313
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.69 E-value=0.00014 Score=47.39 Aligned_cols=112 Identities=24% Similarity=0.225 Sum_probs=66.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC---------------CCCHHHH---HCCCEEEE-EEE-----------
Q ss_conf 99990468988789999998764442001312---------------6868698---62920637-899-----------
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI---------------DSAPEEK---LRGITIAT-AHV----------- 64 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~---------------D~~~~E~---~rGiTi~~-~~~----------- 64 (392)
|++-|-+.+|||||+++|...+.+++..-+.+ |+...+. .-++=|-. +..
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred ----EEECCCEEEEEEECCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf ----9821990899984787302467798-7740023314520123443321067788886318760233100233
Q gi|254780263|r 65 ----SYETDKRFYSHIDCPGHADYVKNMI-TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVD 135 (392)
Q Consensus 65 ----~~~~~~~~i~iiD~PGH~~f~~~mi-~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD 135 (392)
.++..++-+.||.|-|- .... .-...+|..++|++...|-.-|.+ .+-.+-+.-++ +|||.|
T Consensus 82 ~~i~~l~~~g~D~IiIETvGv----GQse~~i~~~aD~~i~v~~p~~GD~iQ~~----K~gi~e~aDl~-vvNK~D 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGV----GQSEVDIASMADTTVVVMAPGAGDDIQAI----KAGIMEIADIV-VVNKAD 148 (148)
T ss_pred HHHHHHHHCCCCEEEEECCCC----CCCHHHHHHHCCEEEEEECCCCCCHHHHC----CCCHHHCCCEE-EEECCC
T ss_conf 999999975999899974877----75602655435669999636887377611----22852124699-993789
No 314
>PRK10416 cell division protein FtsY; Provisional
Probab=97.69 E-value=0.00059 Score=43.61 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=16.4
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8827999990468988789999998764442
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEK 40 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~ 40 (392)
+|++ |.++|-=.+||||.+|.|-.++.+++
T Consensus 294 ~P~V-Il~vGvNG~GKTTTigKLA~~~~~~g 323 (499)
T PRK10416 294 TPFV-ILMVGVNGVGKTTTIGKLARQFEQQG 323 (499)
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9879-99974787878989999999999779
No 315
>KOG0448 consensus
Probab=97.68 E-value=0.00021 Score=46.33 Aligned_cols=140 Identities=21% Similarity=0.195 Sum_probs=78.6
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH-HHHH----------------HHC-CCCCCCCHHHHHCCCEEE-----------
Q ss_conf 88279999904689887899999987-6444----------------200-131268686986292063-----------
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKY-YSEE----------------KKE-YGDIDSAPEEKLRGITIA----------- 60 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~~----------------~~~-~~~~D~~~~E~~rGiTi~----------- 60 (392)
+.|-.|++.|-+.+||||++.+++.. .-.. +.+ ..-+|.. +|+--=.|++
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCC-CCCCCHHHHHHHHHHCCCCCC
T ss_conf 2134799957877768999999998720766665531234663146773115516887-343218887777875173300
Q ss_pred ---EEEEEEECCCE-------EEEEEECCCCHHHHH---HHHHHHH-CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf ---78999821990-------899984787302467---7987740-023314520123443321067788886318760
Q gi|254780263|r 61 ---TAHVSYETDKR-------FYSHIDCPGHADYVK---NMITGAT-QADGAILVCAAEDGPKPQTREHILLARQIGISS 126 (392)
Q Consensus 61 ---~~~~~~~~~~~-------~i~iiD~PGH~~f~~---~mi~g~~-~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~ 126 (392)
.+.....|++. -+-++|.||- |-.. .-+.... -+|+.++|+.|.. -+.|+..|+...-.-+-|+
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGl-d~~se~tswid~~cldaDVfVlV~NaEn-tlt~sek~Ff~~vs~~Kpn 263 (749)
T KOG0448 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGL-DVDSELTSWIDSFCLDADVFVLVVNAEN-TLTLSEKQFFHKVSEEKPN 263 (749)
T ss_pred CCCCEEEEEEECCCCCHHHHCCCEEECCCCC-CCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHHHCCCCC
T ss_conf 3765068999428632133055012058888-8860245999976440775899961763-8689899999985404884
Q ss_pred EEEEECCCCCCCCHH-HHHHCCCCCCE
Q ss_conf 233100233356122-21101232100
Q gi|254780263|r 127 IVVYMNKVDAVDDDE-LLDISEYEIRD 152 (392)
Q Consensus 127 iIv~iNKmD~v~~~~-~~~~i~~~i~~ 152 (392)
|.|..||.|...++. -.+.+..++.+
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~e 290 (749)
T KOG0448 264 IFILNNKWDASASEPECKEDVLKQIHE 290 (749)
T ss_pred EEEEECHHHHHCCCHHHHHHHHHHHHH
T ss_conf 799964012202637789999998875
No 316
>KOG0078 consensus
Probab=97.64 E-value=0.00017 Score=46.94 Aligned_cols=143 Identities=20% Similarity=0.169 Sum_probs=87.3
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE--EEEEECCCCHHHHHHH
Q ss_conf 82799999046898878999999876444200131268686986292063789998219908--9998478730246779
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF--YSHIDCPGHADYVKNM 88 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~--i~iiD~PGH~~f~~~m 88 (392)
..+.+.++|--+.|||.++-++..- ... .+. ..-|-||......+.++++ .-+.||.|.+.| ++|
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~----~f~---~~~-----~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf-~ti 77 (207)
T KOG0078 11 YLFKLLLIGDSGVGKTCLLLRFSDD----SFN---TSF-----ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF-RTI 77 (207)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHC----CCC---CCC-----CCEEEEEEEEEEEEECCEEEEEEEEECCCCHHH-HHH
T ss_conf 1899999778987655766654406----676---776-----515878878889983890899999972430567-889
Q ss_pred HHHH-HCCCCEEEEECCCCCCCCCHHHHHHH-------HHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 8774-00233145201234433210677888-------863187602331002333561222110123210011101453
Q gi|254780263|r 89 ITGA-TQADGAILVCAAEDGPKPQTREHILL-------ARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 89 i~g~-~~~D~ailvVda~~G~~~QT~eh~~l-------~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
.+.. ..|++++||+|-..- ++-||+.. ...-+++. +++=||+|+... | +...++-+++..++
T Consensus 78 ~~sYyrgA~gi~LvyDitne---~Sfeni~~W~~~I~e~a~~~v~~-~LvGNK~D~~~~--R-~V~~e~ge~lA~e~--- 147 (207)
T KOG0078 78 TTAYYRGAMGILLVYDITNE---KSFENIRNWIKNIDEHASDDVVK-ILVGNKCDLEEK--R-QVSKERGEALAREY--- 147 (207)
T ss_pred HHHHHHHCCEEEEEEECCCH---HHHHHHHHHHHHHHHHCCCCCCE-EEEECCCCCCCC--C-CCCHHHHHHHHHHH---
T ss_conf 99998654824999984525---77777999999998637888748-985114121013--3-35679999999984---
Q ss_pred EEEECCCCEEEEEEECC
Q ss_conf 22102331146764114
Q gi|254780263|r 161 DDTPIIRGSALCALQGT 177 (392)
Q Consensus 161 ~~~pii~~sa~~g~~~~ 177 (392)
.++++.+||.++.|.+
T Consensus 148 -G~~F~EtSAk~~~NI~ 163 (207)
T KOG0078 148 -GIKFFETSAKTNFNIE 163 (207)
T ss_pred -CCEEEECCCCCCCCHH
T ss_conf -9827971336799889
No 317
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.62 E-value=0.00013 Score=47.62 Aligned_cols=46 Identities=22% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHH-HCCCCCEEEEECCCCCCCCHH
Q ss_conf 3314520123443321067788886-318760233100233356122
Q gi|254780263|r 96 DGAILVCAAEDGPKPQTREHILLAR-QIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 96 D~ailvVda~~G~~~QT~eh~~l~~-~lgi~~iIv~iNKmD~v~~~~ 141 (392)
|+.+-|+||+......-.+--.++. ..+-+++|+++||.|+++++.
T Consensus 1 DvVleV~DAR~Plss~np~l~~~~~~~~~~K~~ilVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECHHCCCHHH
T ss_conf 98999997037867688749999986069984899985232189899
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0006 Score=43.57 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=68.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCC------CCCCCC---HHHHH------CCCEEEEEEEEE-------ECCCEE
Q ss_conf 99990468988789999998764442001------312686---86986------292063789998-------219908
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEY------GDIDSA---PEEKL------RGITIATAHVSY-------ETDKRF 72 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~------~~~D~~---~~E~~------rGiTi~~~~~~~-------~~~~~~ 72 (392)
++++|-...||||.+..|-..+.-..+.. --+|+. ..|+- -|+-+...+..- ...++.
T Consensus 177 i~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~D 256 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDFD 256 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCCC
T ss_conf 99989988757879999999999862676773799980787588999999999997880698578899999999724999
Q ss_pred EEEEECCC--CHH--HHHHHHHHHHC--CCC-EEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 99984787--302--46779877400--233-14520123443321067788886318760233100233356
Q gi|254780263|r 73 YSHIDCPG--HAD--YVKNMITGATQ--ADG-AILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 73 i~iiD~PG--H~~--f~~~mi~g~~~--~D~-ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
+-||||+| |.| .+.+|..-+.. .|. ..||++|+.+...+. +.+.--..+++..+| +||+|...
T Consensus 257 ~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsat~~~~d~~-~i~~~f~~~~~~~~I--~TKlDEt~ 326 (388)
T PRK12723 257 LVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDIK-EIFHQFSPFSYKTVI--FTKLDETT 326 (388)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHH-HHHHHHCCCCCCEEE--EEECCCCC
T ss_conf 99995899885689999999999974189845999987989999999-999984279998499--98322789
No 319
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.57 E-value=0.00012 Score=47.77 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=43.2
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHC-CCCCEEEEECCCCCCCCHH
Q ss_conf 7798774002331452012344332106778888631-8760233100233356122
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILLARQI-GISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~l-gi~~iIv~iNKmD~v~~~~ 141 (392)
+++-+.+..+|..|.|+||+.+....-.+-...++.. +=+++|+++||+|+++++.
T Consensus 3 rq~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~~ 59 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ 59 (141)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
T ss_conf 899999976999999998988887689999999998438995799986500499999
No 320
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.56 E-value=0.00032 Score=45.28 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=88.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--------------------CCCCHHHHHCCCEEEEE-E-EEEECC-
Q ss_conf 799999046898878999999876444200131--------------------26868698629206378-9-998219-
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--------------------IDSAPEEKLRGITIATA-H-VSYETD- 69 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--------------------~D~~~~E~~rGiTi~~~-~-~~~~~~- 69 (392)
..|++-|-..+|||||+.+|...+..++..-+. |+.+.--++ .=.+.+ | +...+.
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkq--lW~dPg~FIRs~ptrG 116 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQ--LWTDPGVFIRSMPTRG 116 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH--HHCCCCCEECCCCCCC
T ss_conf 78766468888577799999899976597689998879759755145456887754422223--3228985676776667
Q ss_pred -------------------CEEEEEEECCCCHHHHHHHH-HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf -------------------90899984787302467798-7740023314520123443321067788886318760233
Q gi|254780263|r 70 -------------------KRFYSHIDCPGHADYVKNMI-TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVV 129 (392)
Q Consensus 70 -------------------~~~i~iiD~PGH~~f~~~mi-~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv 129 (392)
+|-..||-|=| ++.-. .-+..||..|+|-=|.-|=+=|+. .+=.|-|=-|+
T Consensus 117 ~lGGls~at~~~~~lldA~G~DVI~vETVG----VGQSEVdi~~~aDT~v~v~~pg~GDd~Q~i----KaG~mEiaDI~- 187 (333)
T TIGR00750 117 SLGGLSKATRELVKLLDAAGYDVILVETVG----VGQSEVDIINMADTFVVVTIPGTGDDVQGI----KAGVMEIADIY- 187 (333)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEC----CCHHHHHHHHHHCEEEEEECCCCCCHHHHH----HHHHHEEEEEE-
T ss_conf 525787999999999986389879998415----752487887341505898548878346666----54430232487-
Q ss_pred EECCCCCCCCH--HH-----HHHCCC--------------CCC--EEEEE-EEEEEEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf 10023335612--22-----110123--------------210--01110-14532210233114676411444565212
Q gi|254780263|r 130 YMNKVDAVDDD--EL-----LDISEY--------------EIR--DLLKE-HKYSDDTPIIRGSALCALQGTNKELGEDS 185 (392)
Q Consensus 130 ~iNKmD~v~~~--~~-----~~~i~~--------------~i~--~~l~~-~~~~~~~pii~~sa~~g~~~~n~~~~~~~ 185 (392)
+|||-|.-+-+ .+ |..-.+ .++ ++... .+|+ +|++.+||..|- .
T Consensus 188 VVNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~--Ppv~~tsA~~G~----------G 255 (333)
T TIGR00750 188 VVNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWR--PPVLKTSAVEGR----------G 255 (333)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC--CCEEEEECCCCC----------C
T ss_conf 8816887665899999999888888899999865333344430265511010589--963887335688----------7
Q ss_pred CCCHHHHHHCCC
Q ss_conf 332034431025
Q gi|254780263|r 186 IHALMKAVDTHI 197 (392)
Q Consensus 186 ~~~Ll~~i~~~~ 197 (392)
+.+|.|+|.+|.
T Consensus 256 i~EL~daI~eH~ 267 (333)
T TIGR00750 256 IDELWDAIEEHK 267 (333)
T ss_pred CHHHHHHHHHHH
T ss_conf 167899999999
No 321
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.00098 Score=42.23 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=69.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHH--C----CCEEEEEEEE-------EECCCEEE
Q ss_conf 9999904689887899999987644-420---01312686---86986--2----9206378999-------82199089
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKL--R----GITIATAHVS-------YETDKRFY 73 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~--r----GiTi~~~~~~-------~~~~~~~i 73 (392)
-++++|-...||||++..|-..+.- ++. ..-.+|+. ..|+- . |+-+...+.. -+..++.+
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dl 257 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHI 257 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 58986688876375899999999998389837999768754789999999998759559995999999999997089999
Q ss_pred EEEECCC--CHHH--HH--HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9984787--3024--67--7987740023314520123443321067788886318760233100233356
Q gi|254780263|r 74 SHIDCPG--HADY--VK--NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 74 ~iiD~PG--H~~f--~~--~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
.||||+| |.|- .. .++.......-.+||++|+..... .++.+.--+.+++..+| ++|+|...
T Consensus 258 ILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~~~~d-l~~i~~~f~~~~~~~~I--~TKLDEt~ 325 (404)
T PRK06995 258 VLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATSHGDT-LNEVVQAYRGPGLAGCI--LTKLDEAA 325 (404)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHCCCCCCEEE--EECCCCCC
T ss_conf 9980999897688899999999735788528999779899999-99999984469998399--83040679
No 322
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.53 E-value=0.0011 Score=41.86 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=67.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH-HHH---CCCCCCCC---HHHHHC------CCEEEEEEEEE-------ECCCEEE
Q ss_conf 9999904689887899999987644-420---01312686---869862------92063789998-------2199089
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE-EKK---EYGDIDSA---PEEKLR------GITIATAHVSY-------ETDKRFY 73 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~-~~~---~~~~~D~~---~~E~~r------GiTi~~~~~~~-------~~~~~~i 73 (392)
-++++|-...||||++..|-..+.- +++ ..-.+|+. ..|+-| |+-..+.+..- +..++.+
T Consensus 212 vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~dl 291 (412)
T PRK05703 212 VVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANCDL 291 (412)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 69998888875676999999999997299817999837677779999999999719737984799999999987158997
Q ss_pred EEEECCC--CHHH--HH---HHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 9984787--3024--67---7987740023314520123443321067788886318760233100233356
Q gi|254780263|r 74 SHIDCPG--HADY--VK---NMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 74 ~iiD~PG--H~~f--~~---~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
.|||||| |.|- +. .+.. ....+-..||++|+...... ++-+.--..+++..+| ++|+|...
T Consensus 292 ILIDTaG~s~~d~~~~~eL~~~~~-~~~~~~~~LVlsat~~~~dl-~~i~~~f~~~~~~~lI--~TKlDEt~ 359 (412)
T PRK05703 292 ILIDTAGRSQRDPRLISELKALIE-NSKPIDVYLVLSATTKYRDL-KDIVKHFSRLPLDGLI--LTKLDETS 359 (412)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCHHHH-HHHHHHHCCCCCCEEE--EEEECCCC
T ss_conf 999689889789999999999986-24887189997598998999-9999984679998799--97112899
No 323
>KOG1532 consensus
Probab=97.51 E-value=0.00063 Score=43.40 Aligned_cols=126 Identities=21% Similarity=0.321 Sum_probs=67.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHC--CCCC-------------C---CC--HH-HHH------CCCEEEEEE--
Q ss_conf 799999046898878999999876444200--1312-------------6---86--86-986------292063789--
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKE--YGDI-------------D---SA--PE-EKL------RGITIATAH-- 63 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~--~~~~-------------D---~~--~~-E~~------rGiTi~~~~-- 63 (392)
.-|.++|-..+||||.+.+|...++....- .-.+ | .. ++ =++ -||+-.+..
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~ 99 (366)
T KOG1532 20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFA 99 (366)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 07999944778841399999999862369980886788885488866775665430999999838899864033589999
Q ss_pred EEE---------ECCCEEEEEEECCCC-HHHH----HHHHH-HH--HCCCCEEEEECCCCCCCCCHHHH--HH---HHHH
Q ss_conf 998---------219908999847873-0246----77987-74--00233145201234433210677--88---8863
Q gi|254780263|r 64 VSY---------ETDKRFYSHIDCPGH-ADYV----KNMIT-GA--TQADGAILVCAAEDGPKPQTREH--IL---LARQ 121 (392)
Q Consensus 64 ~~~---------~~~~~~i~iiD~PGH-~~f~----~~mi~-g~--~~~D~ailvVda~~G~~~QT~eh--~~---l~~~ 121 (392)
..| .-+...+-+|||||. +-|. +..|+ ++ +-.-+.+-|||...--.|-|--. ++ ++..
T Consensus 100 tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk 179 (366)
T KOG1532 100 TKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK 179 (366)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 87899999999742204779974888068998427850158667613985999994477678841699889999999986
Q ss_pred CCCCCEEEEECCCCCCCC
Q ss_conf 187602331002333561
Q gi|254780263|r 122 IGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 122 lgi~~iIv~iNKmD~v~~ 139 (392)
..+| +||+.||.|.++.
T Consensus 180 tklp-~ivvfNK~Dv~d~ 196 (366)
T KOG1532 180 TKLP-FIVVFNKTDVSDS 196 (366)
T ss_pred CCCC-EEEEEECCCCCCC
T ss_conf 2687-6999714344561
No 324
>PTZ00099 rab6; Provisional
Probab=97.50 E-value=0.00013 Score=47.59 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=66.9
Q ss_pred CEEEEEE--EEEECCC--EEEEEEECCCCHHHHHHHHHH-HHCCCCEEEEECCCCCCCCCHHHHH-----HHHHH--CCC
Q ss_conf 2063789--9982199--089998478730246779877-4002331452012344332106778-----88863--187
Q gi|254780263|r 57 ITIATAH--VSYETDK--RFYSHIDCPGHADYVKNMITG-ATQADGAILVCAAEDGPKPQTREHI-----LLARQ--IGI 124 (392)
Q Consensus 57 iTi~~~~--~~~~~~~--~~i~iiD~PGH~~f~~~mi~g-~~~~D~ailvVda~~G~~~QT~eh~-----~l~~~--lgi 124 (392)
-||-+.+ ..++.++ ..+.|-||+|++.|- .|... ...|+++|||-|.+.- +|-+++ .+... -.+
T Consensus 11 ~TIGvdf~~k~i~i~~~~v~l~IWDTAGqE~f~-sl~~~y~r~a~~~ilVyDit~~---~SF~~l~~W~~~i~~~~~~~~ 86 (176)
T PTZ00099 11 STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFR-SLIPSYIRDSAAAIVVYDITNR---QSFENTTKWIQDILNERGKDV 86 (176)
T ss_pred CCCCEEEEEEEEEECCEEEEEEEEECCCCCCHH-HHHHHHHCCCCEEEEEECCCHH---HHHHHHHHHHHHHHHHCCCCC
T ss_conf 886688899999999999999999799863413-5768870798679998504207---789999999999998538877
Q ss_pred CCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 6023310023335612221101232100111014532210233114676411444565212332034431025
Q gi|254780263|r 125 SSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHI 197 (392)
Q Consensus 125 ~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~ 197 (392)
+ ++++=||.|+.+..+ ...++..++.++. +.+++.+||.+|.+ +..+++.|...+
T Consensus 87 ~-iiLVGNK~DL~~~r~---V~~ee~~~~A~~~----~~~f~EtSAktg~n----------V~e~F~~la~~i 141 (176)
T PTZ00099 87 I-IALVGNKTDLGDLRK---VTYEEGMQKAQEY----NTMFHETSAKAGHN----------IKVLFKKIAAKL 141 (176)
T ss_pred C-EEEEEECCCHHHHCC---CCHHHHHHHHHHC----CCEEEEEECCCCCC----------HHHHHHHHHHHH
T ss_conf 4-399985565586168---5999999999985----99999984899949----------899999999986
No 325
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=6.9e-05 Score=49.36 Aligned_cols=82 Identities=16% Similarity=0.335 Sum_probs=68.1
Q ss_pred EECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECHH
Q ss_conf 00000013554454301487424534896799950687432125412100121144321001366641124543220211
Q gi|254780263|r 210 MHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGR 289 (392)
Q Consensus 210 ~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rGd 289 (392)
.-+-.+|+.+++|.++.-.|..|.++.|..+.+.-.+..-...++.||+.++++++++.+|+-||+.++| ..|++-||
T Consensus 416 a~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD 493 (509)
T COG0532 416 AEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGD 493 (509)
T ss_pred EEEEEEEECCCCCEEEEEEEECCEEECCCCEEEEECCEEEEEEEEEEEECCCCCHHHHCCCCEEEEEECC--CCCCCCCC
T ss_conf 6788999848997399999865789459807997389089844886412467647672168679999247--56589887
Q ss_pred EEEC
Q ss_conf 7732
Q gi|254780263|r 290 VVCA 293 (392)
Q Consensus 290 vl~~ 293 (392)
+|-.
T Consensus 494 ~le~ 497 (509)
T COG0532 494 ILEV 497 (509)
T ss_pred EEEE
T ss_conf 7999
No 326
>KOG0098 consensus
Probab=97.49 E-value=0.00046 Score=44.28 Aligned_cols=143 Identities=21% Similarity=0.141 Sum_probs=85.8
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHHHHHH
Q ss_conf 279999904689887899999987644420013126868698629206378999821990--899984787302467798
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKR--FYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~~~mi 89 (392)
.+...+||...-|||.|+-+.+.+. -. ...| --|-++.++..+.-+++ ++++-||.||+.|---+-
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~kr---F~--~~hd-------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~ 73 (216)
T KOG0098 6 LFKYIIIGDTGVGKSCLLLRFTDKR---FQ--PVHD-------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTR 73 (216)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCC---CC--CCCC-------CEEEEEECEEEEEECCCEEEEEEEECCCCHHHHHHHH
T ss_conf 4789998777732889999985157---65--4534-------3022440236988858168999975578676999888
Q ss_pred HHHHCCCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCC--EEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECC
Q ss_conf 7740023314520123443-321067788886318760--2331002333561222110123210011101453221023
Q gi|254780263|r 90 TGATQADGAILVCAAEDGP-KPQTREHILLARQIGISS--IVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPII 166 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~-~~QT~eh~~l~~~lgi~~--iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii 166 (392)
.--..|-+||||-|-+.-. +..-..++.=++..+-++ |+++=||.|+..-. +..++|-+.+-++.++ ++.
T Consensus 74 syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~ehgL----ifm 146 (216)
T KOG0098 74 SYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR---EVSKEEGEAFAREHGL----IFM 146 (216)
T ss_pred HHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCC---CCCHHHHHHHHHHCCC----EEE
T ss_conf 884467623899971306667789999999997267883899974414421023---4658889999997395----444
Q ss_pred CCEEEEE
Q ss_conf 3114676
Q gi|254780263|r 167 RGSALCA 173 (392)
Q Consensus 167 ~~sa~~g 173 (392)
..||.++
T Consensus 147 ETSakt~ 153 (216)
T KOG0098 147 ETSAKTA 153 (216)
T ss_pred HHHHHHH
T ss_conf 1244554
No 327
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=97.48 E-value=0.0019 Score=40.48 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=21.2
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 10388279999904689887899999
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAI 32 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L 32 (392)
.+.|..+.+-.+|.-++||||+...+
T Consensus 23 ~~~~~~iKlLLLG~geSGKSTi~KQ~ 48 (350)
T pfam00503 23 KKDRREVKLLLLGAGESGKSTILKQM 48 (350)
T ss_pred HHHHCCCEEEEECCCCCCHHHHHHHH
T ss_conf 87207575988789987599999999
No 328
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.47 E-value=0.0025 Score=39.74 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.4
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHH
Q ss_conf 210388279999904689887899999
Q gi|254780263|r 6 YVRNKESLGLSTIGHVDHGKTTLTAAI 32 (392)
Q Consensus 6 ~~~~k~~~ni~~iGhvd~GKSTL~~~L 32 (392)
..+.+..+.+-++|.-++||||+...+
T Consensus 15 ~~~~~~~~KlLLLG~geSGKSTi~KQm 41 (342)
T smart00275 15 RKKKKREVKLLLLGAGESGKSTILKQM 41 (342)
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 986107575998779987599999999
No 329
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.46 E-value=0.00014 Score=47.38 Aligned_cols=120 Identities=23% Similarity=0.286 Sum_probs=77.4
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH-HHH-HHHC----CCC------------------CCCCH-HHHHCCC--EEEEE
Q ss_conf 88279999904689887899999987-644-4200----131------------------26868-6986292--06378
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKY-YSE-EKKE----YGD------------------IDSAP-EEKLRGI--TIATA 62 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~-~~~~----~~~------------------~D~~~-~E~~rGi--Ti~~~ 62 (392)
++...|-.+|==.+||||++|.|-.+ +.+ .++. .++ .+..+ .+.+..- -++++
T Consensus 100 ~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia 179 (439)
T TIGR00959 100 KRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIA 179 (439)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 86838997313788578899999999999863897034032103478999999976752887110047888988778999
Q ss_pred ---EEEEECCCEEEEEEECCC--CHH--HHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHC----CCCCEEE
Q ss_conf ---999821990899984787--302--46779--8774002331452012344332106778888631----8760233
Q gi|254780263|r 63 ---HVSYETDKRFYSHIDCPG--HAD--YVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLARQI----GISSIVV 129 (392)
Q Consensus 63 ---~~~~~~~~~~i~iiD~PG--H~~--f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~l----gi~~iIv 129 (392)
..++..+++-+-||||.| |-| .+.++ |-...++|=.||||||-.| |+ -+..|+.+ |+. .+|
T Consensus 180 ~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~G---Qd--Avn~A~~F~e~lglt-G~v 253 (439)
T TIGR00959 180 RQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMTG---QD--AVNTAKTFNERLGLT-GVV 253 (439)
T ss_pred HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCH---HH--HHHHHHHHCCCCCCC-EEE
T ss_conf 999999997489789972675125559999999999888688705412201021---69--999998636600135-478
Q ss_pred EECCCCC
Q ss_conf 1002333
Q gi|254780263|r 130 YMNKVDA 136 (392)
Q Consensus 130 ~iNKmD~ 136 (392)
++|||.
T Consensus 254 -ltK~DG 259 (439)
T TIGR00959 254 -LTKLDG 259 (439)
T ss_pred -EECCCC
T ss_conf -854756
No 330
>KOG0070 consensus
Probab=97.45 E-value=0.00012 Score=47.84 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=81.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787302467798
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|...+|.++|==.|||||++-.|-.. .+.+ .=-||....-.+++++.++++-|.-|+.++-+---
T Consensus 15 ~~e~~IlmvGLD~AGKTTILyklk~~---------E~vt------tvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~ 79 (181)
T KOG0070 15 KKEMRILMVGLDAAGKTTILYKLKLG---------EIVT------TVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWK 79 (181)
T ss_pred CCEEEEEEEECCCCCCCEEEEECCCC---------CCCC------CCCCCCCCEEEEEECCEEEEEEECCCCCCCCCCHH
T ss_conf 64679999961689860156750258---------7414------77864531369998661899981588735453135
Q ss_pred HHHHCCCCEEEEECCCCCCC-CCHHHHHH--HHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE-EEEE
Q ss_conf 77400233145201234433-21067788--8863-187602331002333561222110123210011101453-2210
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-PQTREHIL--LARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS-DDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~QT~eh~~--l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~-~~~p 164 (392)
.=....++.|+|||+.+-.. +-+++-+. +... ++.-++.|+-||+|+.+.=. -.++.+.|....+. ..+.
T Consensus 80 ~Y~~nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-----~~ei~~~L~l~~l~~~~w~ 154 (181)
T KOG0070 80 HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-----AAEITNKLGLHSLRSRNWH 154 (181)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCC-----HHHHHHHHHHHCCCCCCCE
T ss_conf 32037727999981773888999999999997683447736999842120424578-----8898867433014688728
Q ss_pred CCCCEEEEE
Q ss_conf 233114676
Q gi|254780263|r 165 IIRGSALCA 173 (392)
Q Consensus 165 ii~~sa~~g 173 (392)
+-.++|.+|
T Consensus 155 iq~~~a~~G 163 (181)
T KOG0070 155 IQSTCAISG 163 (181)
T ss_pred EEEECCCCC
T ss_conf 953013565
No 331
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=97.44 E-value=0.00031 Score=45.37 Aligned_cols=60 Identities=23% Similarity=0.289 Sum_probs=44.1
Q ss_pred CCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 873-024677987740023314520123443321067788886318760233100233356122
Q gi|254780263|r 79 PGH-ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 79 PGH-~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
||| +.-.+.+-.-+..+|+.+.|+||+.+....-.+ +.+.++-++.|+++||+|+++.+.
T Consensus 8 PGHm~ka~r~l~~~l~~~DvileV~DAR~Pl~~~n~~---l~~~~~~K~~ilvlNK~DL~~~~~ 68 (282)
T PRK09563 8 PGHMAKARREIKENLKKVDVVIEVLDARIPLSSENPM---IDKIIGNKPRLLVLNKSDLADPEV 68 (282)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH---HHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 8899999999999987699999997654776758875---999976897699975554889999
No 332
>KOG1486 consensus
Probab=97.43 E-value=0.00023 Score=46.15 Aligned_cols=85 Identities=24% Similarity=0.217 Sum_probs=60.0
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCE-EEEEEEEEECCCEEEEEEECCCCH-------H
Q ss_conf 27999990468988789999998764442001312686869862920-637899982199089998478730-------2
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT-IATAHVSYETDKRFYSHIDCPGHA-------D 83 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiT-i~~~~~~~~~~~~~i~iiD~PGH~-------~ 83 (392)
.-+++.||-.--|||||+..+|...++.+.. -.| ...---.+++++..|-++|.||-- -
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~y-------------eFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG 128 (364)
T KOG1486 62 DARVALIGFPSVGKSTLLSKITSTHSEAASY-------------EFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG 128 (364)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCHHHHHCC-------------EEEEEEEECCEEEECCCEEEEECCCCCCCCCCCCCC
T ss_conf 7379996488744787888764110222110-------------246787303168766834799627530002113788
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 46779877400233145201234433
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPK 109 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~ 109 (392)
-.+.+++.+..||..++|.||++...
T Consensus 129 RGRQviavArtaDlilMvLDatk~e~ 154 (364)
T KOG1486 129 RGRQVIAVARTADLILMVLDATKSED 154 (364)
T ss_pred CCCEEEEEEECCCEEEEEECCCCCHH
T ss_conf 77268887403658999951776156
No 333
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.40 E-value=0.00024 Score=46.05 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCC-CEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEE-EEEEE
Q ss_conf 024677987740023-3145201234433210677888863187602331002333561222110123210011-10145
Q gi|254780263|r 82 ADYVKNMITGATQAD-GAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLL-KEHKY 159 (392)
Q Consensus 82 ~~f~~~mi~g~~~~D-~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l-~~~~~ 159 (392)
.+|..+++..+.--+ ..+.|||+.+-+..--.+ +.+..+-+++++++||+|+...+......+.-++... ...+.
T Consensus 21 ~~~~~~~l~~~~~~~~lVv~VvDi~Df~~S~~~~---l~~~~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~ 97 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIPR---LRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGL 97 (190)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHH---HHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 0368999985246784599997543576444655---7986179868999981551788765888898999997501599
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCC
Q ss_conf 3221023311467641144456521233203443102
Q gi|254780263|r 160 SDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTH 196 (392)
Q Consensus 160 ~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~ 196 (392)
. -..++.+||..+| ++..|++.|.++
T Consensus 98 ~-~~~v~lvSa~~~~----------gi~~L~~~i~~~ 123 (190)
T cd01855 98 K-PKDVILISAKKGW----------GVEELINAIKKL 123 (190)
T ss_pred C-CCCEEEEECCCCC----------CHHHHHHHHHHH
T ss_conf 8-4317997665786----------989999999997
No 334
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.39 E-value=0.00016 Score=47.16 Aligned_cols=83 Identities=17% Similarity=0.130 Sum_probs=52.9
Q ss_pred CCC-HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEE
Q ss_conf 873-0246779877400233145201234433210677888863187602331002333561222110123210011101
Q gi|254780263|r 79 PGH-ADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEH 157 (392)
Q Consensus 79 PGH-~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~ 157 (392)
||| ..-.+.+-.-+..+|+.+-|+||+.....+-.+ +.+.++-++.|+++||+|+++.+.+.+ ..+++++.
T Consensus 5 PGHm~ka~~~l~~~l~~~DvileV~DAR~Pl~~~n~~---l~~~~~~K~~ilvlNK~DL~~~~~~~~-----w~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPM---IDEIRGNKPRLIVLNKADLADPAVTKQ-----WLKYFEQK 76 (276)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHH---HHHHHCCCCEEEEEECCCCCCHHHHHH-----HHHHHHHC
T ss_conf 5889999999999987599999998677887868975---999866996799973434599999999-----99999843
Q ss_pred EEEEEEECCCCEEEEE
Q ss_conf 4532210233114676
Q gi|254780263|r 158 KYSDDTPIIRGSALCA 173 (392)
Q Consensus 158 ~~~~~~pii~~sa~~g 173 (392)
..+++++|+..+
T Consensus 77 ----~~~~~~~sa~~~ 88 (276)
T TIGR03596 77 ----GIKALAINAKKG 88 (276)
T ss_pred ----CCCEEEEHHCCC
T ss_conf ----991898643074
No 335
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=97.38 E-value=0.00068 Score=43.23 Aligned_cols=142 Identities=21% Similarity=0.262 Sum_probs=69.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHH-------CCCC--CCCCHHHHHCCCEEE-EEE--E------EE--------EC
Q ss_conf 999904689887899999987644420-------0131--268686986292063-789--9------98--------21
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKK-------EYGD--IDSAPEEKLRGITIA-TAH--V------SY--------ET 68 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~-------~~~~--~D~~~~E~~rGiTi~-~~~--~------~~--------~~ 68 (392)
..+-|--.||||||+.+|++... .+. +.+. .|..-. ++.|..+- +.. . .| +.
T Consensus 3 ~iitGFLGsGKTTll~~ll~~~~-~~~~~avI~Ne~g~~~iD~~ll-~~~~~~v~el~~GciCc~~~~d~~~~l~~l~~~ 80 (174)
T pfam02492 3 TVLTGFLGSGKTTLLEHLLRDNR-EGLKIAVIVNDFGETGIDAELL-RETGAEIVELNNGCICCTIREDLSMVLEALLEL 80 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 99934887889999999998444-8984799993365302079998-706961899748866454333699999999855
Q ss_pred --CCEEEEEEECCCCHHHHHHHHHH--HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf --99089998478730246779877--40023314520123443321067788886318760233100233356122211
Q gi|254780263|r 69 --DKRFYSHIDCPGHADYVKNMITG--ATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLD 144 (392)
Q Consensus 69 --~~~~i~iiD~PGH~~f~~~mi~g--~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~ 144 (392)
.+..+.||-+-|-.+-. +.+.. --..|..+-||||....... ..+......+..-.+| ++||+|++++.+..+
T Consensus 81 ~~~~~d~iiIE~sGla~p~-~i~~~~~~~~~~~~i~vvDa~~~~~~~-~~~~~~~~Qi~~AD~v-vlNK~Dl~~~~~~l~ 157 (174)
T pfam02492 81 KLPRLDLLFIETTGLACPA-PVLDLRSDLGLDGVVTVVDVKNFTEGE-DIPEKAPDQIAFADLI-VINKTDLAPAVGALE 157 (174)
T ss_pred CCCCCCEEEEECCCCCCHH-HHHHHHHCCCCCEEEEEEECHHHHHCC-CCHHHHHHHHHHCCEE-EEEHHHCCCCHHHHH
T ss_conf 7899999999587667707-777653202654599999723433002-0078999999876999-984665378276999
Q ss_pred HCCCCCCEEEEEEEEEEEEECCC
Q ss_conf 01232100111014532210233
Q gi|254780263|r 145 ISEYEIRDLLKEHKYSDDTPIIR 167 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~~~~pii~ 167 (392)
.++..++. . ++.+|++|
T Consensus 158 ~~~~~i~~----l--NP~A~Iip 174 (174)
T pfam02492 158 KLEADLRR----L--NPEAPIIP 174 (174)
T ss_pred HHHHHHHH----H--CCCCEECC
T ss_conf 99999999----7--89993669
No 336
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.38 E-value=0.00032 Score=45.24 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=40.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf 882799999046898878999999876444200131268686986292063789998219908999847873
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH 81 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH 81 (392)
.+.++++++|-..-|||||+.+|.+.. ...+-.. -|.|-....... +..+-++||||-
T Consensus 116 ~~~i~v~vVG~PNVGKSSlIN~L~~~k------~~~v~~~-----PG~Tr~~q~i~l---~~~i~llDtPGv 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKK------VAKVGNR-----PGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCC------EEEECCC-----CCCCCEEEEEEE---CCCEEEECCCCC
T ss_conf 786389997279875899999873672------5877796-----542102589995---797799668874
No 337
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.35 E-value=0.00011 Score=48.12 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=80.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCC-CCHHHH--HCCCE---EEEE-------------EEEEE
Q ss_conf 8827999990468988789999998764442---0013126-868698--62920---6378-------------99982
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEK---KEYGDID-SAPEEK--LRGIT---IATA-------------HVSYE 67 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~---~~~~~~D-~~~~E~--~rGiT---i~~~-------------~~~~~ 67 (392)
+.-+-+-+++...||||||+.+.+..+.... .-.+++. ..+.|| +.|+. |+.+ ...+.
T Consensus 102 ~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~T~~DA~RI~~~Gv~avQInTG~~CHLDA~MV~~al~~l~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 79189993069987889999999998733675799960423566799999769958995479976759999999998489
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 19908999847873024677987740---023314520123443321067788886318760233100233356122211
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGAT---QADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLD 144 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~---~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~ 144 (392)
.++.-+-||.--| |.+--++ ..+.=++|++.+||...--| .=..+.--.+ +.|||+|+..+-. |+
T Consensus 182 l~~~dllfIENVG------NLVCPA~FDLGE~~kVvvlSVtEGeDKPlK----YP~mF~~ad~-vlinKiDLlp~~d-FD 249 (290)
T PRK10463 182 LDDNGILFIENVG------NLVCPASFDLGEKHKVAVLSVTEGEDKPLK----YPHMFAAASL-MLLNKVDLLPYLN-FD 249 (290)
T ss_pred CCCCCEEEEECCC------CCCCCCCCCCCCCEEEEEEEECCCCCCCCC----CHHHHHHCCE-EEEEHHHHHHHCC-CC
T ss_conf 8779899981278------843551203677617999970688886444----7667642578-9986565122028-89
Q ss_pred HCCCCCCEEEEEEEEEEEEECCCCEEEEE
Q ss_conf 01232100111014532210233114676
Q gi|254780263|r 145 ISEYEIRDLLKEHKYSDDTPIIRGSALCA 173 (392)
Q Consensus 145 ~i~~~i~~~l~~~~~~~~~pii~~sa~~g 173 (392)
.- ...+.+++ .+++++++++|+.+|
T Consensus 250 ~~--~~~~~~~~--vNp~~~v~~vSa~tG 274 (290)
T PRK10463 250 VE--KCIACARE--VNPEIEIILISATSG 274 (290)
T ss_pred HH--HHHHHHHH--HCCCCCEEEEECCCC
T ss_conf 99--99999998--698985899756888
No 338
>pfam09173 eIF2_C Initiation factor eIF2 gamma, C terminal. Members of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA.
Probab=97.34 E-value=0.0015 Score=41.10 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=49.2
Q ss_pred CCCCCCCCEEEEEECCEEEEEEEEECCCHHHHCCCCEEEEEEEECCCEEECCCCEEEE--EEC--CEEEEEEEE
Q ss_conf 5551159789999541477799996189557078976999999778177546984999--989--969998999
Q gi|254780263|r 318 TTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEVELIYPIAMEPNQTFSM--REG--GKTVGAGLI 387 (392)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~~e~~~rfil--Rd~--~~tig~G~I 387 (392)
..+++.|-..++.+|++.+.+++...... .++++|..|+|.+.++|+++ |-+ .|.||+|.|
T Consensus 24 V~~l~~~E~LmlnvGtatt~G~V~~vk~d---------~~~v~L~~Pvca~~g~rVaiSRrI~~rWRLIG~G~I 88 (88)
T pfam09173 24 VEKLKKGEVLMLNIGSATTGGVVTAVKKD---------LAEVELKRPVCTEIGEKVAISRRVDKRWRLIGWGTI 88 (88)
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEEECC---------EEEEEECCCEECCCCCEEEEEEEECCEEEEEEEEEC
T ss_conf 25477999799997456525899999587---------799996677887899999999886886999988879
No 339
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=97.33 E-value=0.00024 Score=46.04 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf 882799999046898878999999876444200131268686986292063789998219908999847873
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH 81 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH 81 (392)
.+.++++++|-..-|||||+.+|.+... ..+-.. -|.|-....... + ..+.++||||=
T Consensus 119 ~~~i~v~vvG~PNVGKSSlIN~L~~~k~------~~v~~~-----PG~Tk~~q~v~l--~-~~i~L~DtPGv 176 (282)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKI------AKTGNR-----PGVTKSQQWIKL--G-KGLELLDTPGI 176 (282)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE------EEECCC-----CCCEEEEEEEEE--C-CCEEEECCCCC
T ss_conf 7863899970697767999998747705------876796-----541002589995--7-98899668874
No 340
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.33 E-value=0.0024 Score=39.81 Aligned_cols=69 Identities=28% Similarity=0.281 Sum_probs=50.4
Q ss_pred ECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 219908999847873024677987740023314520123443321067788886318760233100233356
Q gi|254780263|r 67 ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 67 ~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
.++++-|-|||||-.-. ..++..+..+|.+++|+....--..-+++...+++.+++|- -+++|+.|..+
T Consensus 89 ~~~~~D~viiD~Ppg~~--~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~-gvV~Nr~~~~~ 157 (179)
T cd03110 89 KAEGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPV-GVVINKYDLND 157 (179)
T ss_pred HCCCCCEEEEECCCCCC--HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCE-EEEEECCCCCC
T ss_conf 44379989981899975--78999997399499981994789999999999999829978-99996887887
No 341
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.32 E-value=0.001 Score=42.12 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=47.7
Q ss_pred CEEEEEEECC-CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 9089998478-7302467798774002331452012344332106778888631876023310023335
Q gi|254780263|r 70 KRFYSHIDCP-GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 70 ~~~i~iiD~P-GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
.+-+-++||- |-+-|.+-++. .+|..|+|+|.+.--..-.++--.|+..+|++++.+++||.|.-
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~~---~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTIE---GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCCEEEEECCCCHHHHCCCCCC---CCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCH
T ss_conf 6748999633456665656325---78779999578778888899999999871875499999503411
No 342
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=97.31 E-value=0.0016 Score=40.93 Aligned_cols=150 Identities=21% Similarity=0.295 Sum_probs=85.3
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH----CCCCCCCCH-HH------HHCCCEE--------EEEEEEE-
Q ss_conf 10388279999904689887899999987644420----013126868-69------8629206--------3789998-
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKK----EYGDIDSAP-EE------KLRGITI--------ATAHVSY- 66 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~----~~~~~D~~~-~E------~~rGiTi--------~~~~~~~- 66 (392)
..+||++ |.++|==..||||.++.|-+.+.++++ ..++|.|=. -| +.-|+.+ |.+..-|
T Consensus 78 ~~~kp~V-il~VGVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fD 156 (284)
T TIGR00064 78 EEKKPNV-ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFD 156 (284)
T ss_pred CCCCCEE-EEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHH
T ss_conf 4789779-999844088601028899999987499089982752479999999998988387554078898871789999
Q ss_pred -----ECCCEEEEEEECCC--C--HHHHHH---HHHHHH------CCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCC
Q ss_conf -----21990899984787--3--024677---987740------02331452012344332--1067788886318760
Q gi|254780263|r 67 -----ETDKRFYSHIDCPG--H--ADYVKN---MITGAT------QADGAILVCAAEDGPKP--QTREHILLARQIGISS 126 (392)
Q Consensus 67 -----~~~~~~i~iiD~PG--H--~~f~~~---mi~g~~------~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~ 126 (392)
.-+++-+=||||.| | .+.+.+ +.|-+. .+|..|||+||..|-.+ |-|. -..+.++-
T Consensus 157 Ai~~Ak~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~---F~eav~lt- 232 (284)
T TIGR00064 157 AIQAAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKV---FNEAVGLT- 232 (284)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHH---HHHHCCCC-
T ss_conf 89999874997899734754546620399999999987321025787557542202220308999999---86540688-
Q ss_pred EEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 233100233356122211012321001110145322
Q gi|254780263|r 127 IVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 127 iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
.|+ +||||...-==..=.+..++.--.+-.|+.+.
T Consensus 233 Gii-LTKLDg~AKGG~~l~i~~~l~~Pv~~~G~GE~ 267 (284)
T TIGR00064 233 GII-LTKLDGTAKGGIILAIAYELKLPVKFIGVGEK 267 (284)
T ss_pred EEE-EECCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 589-96346880378999889985797699854887
No 343
>KOG1954 consensus
Probab=97.29 E-value=0.00087 Score=42.54 Aligned_cols=130 Identities=22% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHH--HHHCCCCCCC------CHHH-HHCCCEEEEE----EEE-----------
Q ss_conf 88279999904689887899999987644--4200131268------6869-8629206378----999-----------
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSE--EKKEYGDIDS------APEE-KLRGITIATA----HVS----------- 65 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~--~~~~~~~~D~------~~~E-~~rGiTi~~~----~~~----------- 65 (392)
|| -|-.+|.--.||||.+..|+..--. +-.-...+|+ .++| ---|-+.-+- |+.
T Consensus 58 KP--mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954 58 KP--MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CC--EEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 84--4899724666603999998717787554689997530689985586566678625646877516566667999998
Q ss_pred E---ECCC---EEEEEEECCCC-----------HHHHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCCE
Q ss_conf 8---2199---08999847873-----------0246779877400233145201234-433210677888863187602
Q gi|254780263|r 66 Y---ETDK---RFYSHIDCPGH-----------ADYVKNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGISSI 127 (392)
Q Consensus 66 ~---~~~~---~~i~iiD~PGH-----------~~f~~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi~~i 127 (392)
| ..++ -++|||||||- -||..-.--=+.-+|.-+|+.||.+ -+.+.+++.+..++-.-- ++
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed-ki 214 (532)
T KOG1954 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED-KI 214 (532)
T ss_pred HHHHCCCHHHHHHEEEECCCCCCCCCHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCCCC-EE
T ss_conf 87733875655004442367532012220123678088999999745689997246645666789999998618864-06
Q ss_pred EEEECCCCCCCCHHH
Q ss_conf 331002333561222
Q gi|254780263|r 128 VVYMNKVDAVDDDEL 142 (392)
Q Consensus 128 Iv~iNKmD~v~~~~~ 142 (392)
=|++||.|.|+.+++
T Consensus 215 RVVLNKADqVdtqqL 229 (532)
T KOG1954 215 RVVLNKADQVDTQQL 229 (532)
T ss_pred EEEECCCCCCCHHHH
T ss_conf 888303244379999
No 344
>KOG0094 consensus
Probab=97.28 E-value=0.0033 Score=38.95 Aligned_cols=157 Identities=21% Similarity=0.239 Sum_probs=88.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE--EEECCC--EEEEEEECCCCHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899--982199--089998478730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV--SYETDK--RFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~--~~i~iiD~PGH~~f~~~m 88 (392)
..++++|.-.-|||+|+-+...-. -|+ .-+-||-+-|. .|...+ .++-+=||.|.+.| +.+
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~---------fd~-----~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERF-rsl 87 (221)
T KOG0094 23 YKLVFLGDQSVGKTSLITRFMYDK---------FDN-----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSL 87 (221)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---------HCC-----CCCCEEEEEEEEEEEEECCCEEEEEEEECCCHHHH-HHH
T ss_conf 789998667654478888998763---------046-----45654656777888997381789998754467877-531
Q ss_pred HHH-HHCCCCEEEEECCC-CCCCCCHHHHHHHHHH-CCCC-C-EEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 877-40023314520123-4433210677888863-1876-0-2331002333561222110123210011101453221
Q gi|254780263|r 89 ITG-ATQADGAILVCAAE-DGPKPQTREHILLARQ-IGIS-S-IVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 89 i~g-~~~~D~ailvVda~-~G~~~QT~eh~~l~~~-lgi~-~-iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
+-. ...+.+||+|-|-+ .+-+.+|..-+.=++. -|-. . +.++=||-|+++..+... .+.+ ..-++. ++
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~-eEg~--~kAkel----~a 160 (221)
T KOG0094 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI-EEGE--RKAKEL----NA 160 (221)
T ss_pred HHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHH-HHHH--HHHHHH----CC
T ss_conf 0555038737999996356401776999999998606888659999716312444656538-8789--889872----95
Q ss_pred ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 02331146764114445652123320344310252222
Q gi|254780263|r 164 PIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ 201 (392)
Q Consensus 164 pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~~p~ 201 (392)
.++..||..|. | +..|+.-|...+|.++
T Consensus 161 ~f~etsak~g~---N-------Vk~lFrrIaa~l~~~~ 188 (221)
T KOG0094 161 EFIETSAKAGE---N-------VKQLFRRIAAALPGME 188 (221)
T ss_pred EEEEECCCCCC---C-------HHHHHHHHHHHCCCCC
T ss_conf 89983044799---8-------8999999998665731
No 345
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.27 E-value=0.00054 Score=43.84 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=39.7
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 8279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
..++++++|+...|||||+.+|.+.. ...+.. .-|.|.+.....+ +..+.|+||||
T Consensus 100 ~~~~v~ivG~PNVGKSTLIN~L~~~~------~~~v~~-----~pGtTr~~~~i~~---~~~~~liDTpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH------SASTSP-----SPGYTKGEQLVKI---TSKIYLLDTPG 155 (156)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC------EEEECC-----CCCEECCEEEEEE---CCCEEEEECCC
T ss_conf 66289998147845989999974881------377759-----9980705599997---99889998909
No 346
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=97.27 E-value=0.00096 Score=42.29 Aligned_cols=144 Identities=19% Similarity=0.201 Sum_probs=85.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE-EEEEECCC-CHH--------
Q ss_conf 99999046898878999999876444200131268686986292063789998219908-99984787-302--------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF-YSHIDCPG-HAD-------- 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~-i~iiD~PG-H~~-------- 83 (392)
.++++|....|||||+..+.+........ +......+-.|+ +...... +.++|+|| |..
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~d~pg~~~~~~~~~~~~ 70 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSP---KPQTTRNRISGI--------LTTGASQNIIFIDTPGFHEPEKHKLGEL 70 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCC---CCHHHHHHHHEE--------EECCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 11211577653366777663241010023---101234332001--------2236655157862587651245677888
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC-CCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 467798774002331452012344332106778888631876023310023335-6122211012321001110145322
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV-DDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v-~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
..++....+...|..++++++..+...........++....+ ..+.+||+|.. .+++..... ........+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~ 144 (278)
T TIGR00436 71 LNKEARSALGGVDLLLFVVDSDEWNGDGDEFLLEKLQNLKRP-VLLTLNKLDNKNFPDKLLPLL----DKYAGLEDFK-P 144 (278)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCH-HHHHHHHHHHCCHHHHHHHHH----HHHHHHHCCC-C
T ss_conf 888887531232268898633445564046889876520210-100122333101035677777----6665542046-7
Q ss_pred EECCCCEEEEEE
Q ss_conf 102331146764
Q gi|254780263|r 163 TPIIRGSALCAL 174 (392)
Q Consensus 163 ~pii~~sa~~g~ 174 (392)
.+++++++..+.
T Consensus 145 ~~~~~~~~~~~~ 156 (278)
T TIGR00436 145 WPIVPISALKGD 156 (278)
T ss_pred CCEEEHHHHHHC
T ss_conf 520110112100
No 347
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0017 Score=40.82 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=50.1
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCC---HHHH------HCCCEEEEEEEE---------E-ECCCEEE
Q ss_conf 9999046898878999999876444200131--2686---8698------629206378999---------8-2199089
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSA---PEEK------LRGITIATAHVS---------Y-ETDKRFY 73 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~---~~E~------~rGiTi~~~~~~---------~-~~~~~~i 73 (392)
|+++|--.+||||.++.|-..+.+++..-.- +|+. ..|+ .-|+-+-.+... . ..+++-+
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av~~~a~~~~~Dv 288 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDH 288 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCE
T ss_conf 99989998978999999999999779917999706677889999999999979649981888999999999986289998
Q ss_pred EEEECCC--C--HHHHHHH--HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 9984787--3--0246779--8774002331452012344332106778888631876023310023335
Q gi|254780263|r 74 SHIDCPG--H--ADYVKNM--ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 74 ~iiD~PG--H--~~f~~~m--i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
-||||.| | .+.+.++ +..+...+..+||+||..+-..+... +.-...+++.- +| +||+|..
T Consensus 289 VIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag~~~~~v~qa-~~~~~~v~ItG-iI-LTKLDgt 355 (407)
T PRK12726 289 ILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTI-LPKLAEIPIDG-FI-ITKMDET 355 (407)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHH-HHHHCCCCCCE-EE-EEECCCC
T ss_conf 99969998813499999999987332896699993675669999999-98704799987-99-9701478
No 348
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.20 E-value=0.0011 Score=42.03 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=46.4
Q ss_pred HHCCCCEEEEECCCCCC-C-CCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 40023314520123443-3-210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 92 ATQADGAILVCAAEDGP-K-PQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~-~-~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
++..|.+++|+++.+.. . ..-.+.+.+|...|++++| ++||+|++++++..... .. ... ...|++.+|
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvi-vlnK~DL~~~~~~~~~~----~~-~~~----~gy~v~~~S 145 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVI-VLTKADLLDDEEEELEL----VE-ALA----LGYPVLAVS 145 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECHHCCCCHHHHHHH----HH-HHC----CCCEEEEEE
T ss_conf 972668999952689989989999999999977996899-99862219948999999----99-872----998499996
Q ss_pred EEEE
Q ss_conf 4676
Q gi|254780263|r 170 ALCA 173 (392)
Q Consensus 170 a~~g 173 (392)
+.++
T Consensus 146 ~~~~ 149 (287)
T cd01854 146 AKTG 149 (287)
T ss_pred CCCC
T ss_conf 6898
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.19 E-value=0.00067 Score=43.25 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=40.1
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
+...+++++|....|||||+.+|.+. ....+... -|.|-....... +..+.++||||
T Consensus 81 ~~~~~i~ivG~PNVGKSSlIN~L~g~------k~~~v~~~-----PG~Tr~~~~i~~---~~~i~liDTPG 137 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALVGK------KKVSVSAT-----PGKTKHFQTIFL---TPTITLCDCPG 137 (141)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC------CEEEECCC-----CCCCCCEEEEEE---CCCEEEEECCC
T ss_conf 77626899778886699999998588------66876599-----941576689996---89999998988
No 350
>KOG0084 consensus
Probab=97.18 E-value=0.0021 Score=40.13 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=86.1
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEE--EEEEECCCCHHHHHHHH
Q ss_conf 2799999046898878999999876444200131268686986292063789998219908--99984787302467798
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRF--YSHIDCPGHADYVKNMI 89 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~--i~iiD~PGH~~f~~~mi 89 (392)
.+.|.++|.-+-|||-|+-|+.. |+..++...-|-+|.....++.+++. +.+=||.|.+.|=--+.
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~ 76 (205)
T KOG0084 9 LFKIILIGDSGVGKTCLLLRFKD------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITS 76 (205)
T ss_pred EEEEEEECCCCCCHHHHHHHHCC------------CCCCHHHCCEEEEEEEEEEEEECCEEEEEEEEECCCCHHHHHHHH
T ss_conf 89999987789676355566626------------985333232312678898755526488887666365377755547
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHH-HHHH---HCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE-
Q ss_conf 774002331452012344332106778-8886---31876023310023335612221101232100111014532210-
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHI-LLAR---QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP- 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~-~l~~---~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p- 164 (392)
.=-..|+++|+|-|.++-..=.--.++ .=++ .-+|+.+. +=||.|+.+.-. .. .++-+++.... +.|
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lL-VGNK~Dl~~~~~-v~--~~~a~~fa~~~----~~~~ 148 (205)
T KOG0084 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLL-VGNKCDLTEKRV-VS--TEEAQEFADEL----GIPI 148 (205)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEE-EEECCCCHHHCC-CC--HHHHHHHHHHC----CCCC
T ss_conf 6616787599999765577765488999986652467787688-862455186400-17--99999998642----9830
Q ss_pred CCCCEEEEEE
Q ss_conf 2331146764
Q gi|254780263|r 165 IIRGSALCAL 174 (392)
Q Consensus 165 ii~~sa~~g~ 174 (392)
+.++||..+.
T Consensus 149 f~ETSAK~~~ 158 (205)
T KOG0084 149 FLETSAKDST 158 (205)
T ss_pred EEECCCCCCC
T ss_conf 3550468754
No 351
>KOG1707 consensus
Probab=97.12 E-value=0.0036 Score=38.72 Aligned_cols=118 Identities=23% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 38827999990468988789999998764442001312686869862920637899982199089998478730246779
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
.++.++|+++|--..|||+|+=+|++- ...|.-+. |---|||. +.+..+.-..+|+|++-..+=--..
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~e--------ef~~~VP~-rl~~i~IP---advtPe~vpt~ivD~ss~~~~~~~l 73 (625)
T KOG1707 6 TLKDVRIVLIGDEGVGKTSLIMSLLEE--------EFVDAVPR-RLPRILIP---ADVTPENVPTSIVDTSSDSDDRLCL 73 (625)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH--------HCCCCCCC-CCCCCCCC---CCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 755259999778886689999998763--------35453455-57761158---7567676721887436664256889
Q ss_pred HHHHHCCCCEEEEECCCCC--CCCCHHHHHHHHHHCC-----CCCEEEEECCCCCCCC
Q ss_conf 8774002331452012344--3321067788886318-----7602331002333561
Q gi|254780263|r 89 ITGATQADGAILVCAAEDG--PKPQTREHILLARQIG-----ISSIVVYMNKVDAVDD 139 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G--~~~QT~eh~~l~~~lg-----i~~iIv~iNKmD~v~~ 139 (392)
..-+.+||+..+|-+.++- +..-+..-+=+.+.++ +| +|+|=||.|..+.
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~~ 130 (625)
T KOG1707 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGDN 130 (625)
T ss_pred HHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCC-EEEEEECCCCCCC
T ss_conf 99986458899998538768765444322365644157776687-7998303577554
No 352
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.10 E-value=0.00052 Score=43.93 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=82.0
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC---CCC-CCCCHHHH--HCCCE---EEEEEEE----------------
Q ss_conf 82799999046898878999999876444200---131-26868698--62920---6378999----------------
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE---YGD-IDSAPEEK--LRGIT---IATAHVS---------------- 65 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~---~~~-~D~~~~E~--~rGiT---i~~~~~~---------------- 65 (392)
-.+=+=++|.+.||||||+..+......+.+- .|+ .-..+.|| +.|.. |++|-.+
T Consensus 33 g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~t~~DA~RlR~~G~~a~~~nTGk~CHLdA~mv~G~~~~L~~ 112 (225)
T TIGR00073 33 GLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQTKNDADRLRKYGVPAIQINTGKECHLDAHMVAGAIHALKD 112 (225)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 97899802588611589999999984578978999755322556999986498688636886444016678658755421
Q ss_pred EECCCE-EEEEEE------CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 821990-899984------7873024677987740023314520123443321067788886318760233100233356
Q gi|254780263|r 66 YETDKR-FYSHID------CPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 66 ~~~~~~-~i~iiD------~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
+..++. -+=||- ||-.-|. ..+.=+.|+|.+||-..- ..|=.+-+.. .+|| |||.|++.
T Consensus 113 ~~ld~~~DlL~IENVGNLvCP~~FdL---------Ge~~rVvllSVTEGdDk~-lKyP~~F~~A---d~~~-inK~DL~~ 178 (225)
T TIGR00073 113 LPLDDISDLLLIENVGNLVCPADFDL---------GEHMRVVLLSVTEGDDKV-LKYPAMFKEA---DLIL-INKVDLAE 178 (225)
T ss_pred CCCCCCCCEEEEEECCCCEECCCCCC---------CCCCEEEEEEECCCCCCC-CCCCHHHHHH---HHHH-HCHHHHHH
T ss_conf 68887146268864476100673112---------356307999865899965-4661588744---4562-14788997
Q ss_pred C-HHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHC
Q ss_conf 1-22211012321001110145322102331146764114445652123320344310
Q gi|254780263|r 139 D-DELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDT 195 (392)
Q Consensus 139 ~-~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~ 195 (392)
. +-..+...+.++. .+++++||.+|+.+| ++.+..++.|..
T Consensus 179 ~v~~D~ek~~~d~~~------~nP~a~Ii~~S~ktg----------~Gl~~w~~~l~~ 220 (225)
T TIGR00073 179 AVGFDVEKMKADARK------INPEAEIILVSAKTG----------KGLDEWLEFLEG 220 (225)
T ss_pred HHCCCHHHHHHHHHH------HCCCEEEEEEECCCC----------CCHHHHHHHHHH
T ss_conf 707367899999986------289507998636897----------347899999998
No 353
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=97.08 E-value=0.0018 Score=40.53 Aligned_cols=65 Identities=22% Similarity=0.142 Sum_probs=36.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHH
Q ss_conf 999990468988789999998764442001312686869862920637899982199089998478730246
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYV 85 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~ 85 (392)
..+++||-..|||||+.+|.....-.-. ...+--.||.-=.....-|..++-- -+|||||-+.|-
T Consensus 37 ~sv~~G~SGVGKSTLiN~L~~~~~~~t~------~iS~~~~rGkHTTt~~~l~~l~~gg-~iiDTPG~r~f~ 101 (161)
T pfam03193 37 TSVLAGQSGVGKSTLLNALLPELDLRTG------EISEKLGRGRHTTTHVELFPLPGGG-LLIDTPGFRELG 101 (161)
T ss_pred EEEEECCCCCCHHHHHHHHCCHHHHHHH------HHHHHHCCCCCEEEEEEEEEECCCC-EEEECCCCCCCC
T ss_conf 5999889998899999885634435777------5358863885112113799807995-898589876257
No 354
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=97.08 E-value=0.00031 Score=45.33 Aligned_cols=73 Identities=27% Similarity=0.281 Sum_probs=45.8
Q ss_pred HHCCCCEEEEECCCCCC-C-CCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 40023314520123443-3-210677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 92 ATQADGAILVCAAEDGP-K-PQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~-~-~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
|+..|.+++|+++.+.. . .+.-+.+.+|...|++++ +++||+|+++..+..+. ..+..+.. ..|++.+|
T Consensus 78 AANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pv-ivlnK~DL~~~~~~~~~----~~~~y~~~----gy~v~~~S 148 (298)
T PRK00098 78 AANVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPI-IVLNKIDLVDDLEEARE----RLALYRAI----GYDVLELS 148 (298)
T ss_pred EEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE-EEEECCCCCCCHHHHHH----HHHHHHHC----CCCEEEEE
T ss_conf 87447899998568898998999999999998699589-99642456477999999----99999878----99789996
Q ss_pred EEEE
Q ss_conf 4676
Q gi|254780263|r 170 ALCA 173 (392)
Q Consensus 170 a~~g 173 (392)
+.++
T Consensus 149 ~~~~ 152 (298)
T PRK00098 149 AKEG 152 (298)
T ss_pred CCCC
T ss_conf 8999
No 355
>KOG3886 consensus
Probab=97.03 E-value=0.00083 Score=42.66 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=81.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCCCHHHHHHHHHH-
Q ss_conf 9999904689887899999987644420013126868698629206378999821-99089998478730246779877-
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPGHADYVKNMITG- 91 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PGH~~f~~~mi~g- 91 (392)
.+-..|--.+|||+|-+.+-.-+... | -+.-|=|||..+.+..+ .+-..++-|+.|.+.|+.|-.+.
T Consensus 6 KvlLMGrsGsGKsSmrsiiF~ny~a~-------D----~~rlg~tidveHsh~RflGnl~LnlwDcggqe~fmen~~~~q 74 (295)
T KOG3886 6 KVLLMGRSGSGKSSMRSIIFANYIAR-------D----TRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQ 74 (295)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHH-------H----HHCCCCCCEEEEHHHHHHHHHEEEHHCCCCCHHHHHHHHHHC
T ss_conf 38885047887434520566656566-------5----516688611664354442001000213678099999887632
Q ss_pred ----HHCCCCEEEEECCCCCCCCCHHHHHHH-----HHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf ----400233145201234433210677888-----863187602331002333561222
Q gi|254780263|r 92 ----ATQADGAILVCAAEDGPKPQTREHILL-----ARQIGISSIVVYMNKVDAVDDDEL 142 (392)
Q Consensus 92 ----~~~~D~ailvVda~~G~~~QT~eh~~l-----~~~lgi~~iIv~iNKmD~v~~~~~ 142 (392)
.+..++.+-|.||..-.+.---+|.+- ++..-.-++.+.+.|||++..+++
T Consensus 75 ~d~iF~nv~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886 75 EDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred CHHHHEEHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCHH
T ss_conf 001010021146654212136666489999999999853974237778740300025607
No 356
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.01 E-value=0.0044 Score=38.20 Aligned_cols=121 Identities=20% Similarity=0.273 Sum_probs=63.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCC--EEEEEEEEEECCCEEEEEEECCCC----------
Q ss_conf 99999046898878999999876444200131268686986292--063789998219908999847873----------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGI--TIATAHVSYETDKRFYSHIDCPGH---------- 81 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGi--Ti~~~~~~~~~~~~~i~iiD~PGH---------- 81 (392)
=..+||.-.+||||++..= + .+..--|.+.....+|+ |.++- .+| ++. =-+|||.|.
T Consensus 113 WYlviG~~gsGKTt~l~~S-g------l~fPl~~~~~~~~~~g~ggt~~cd-wwf-t~~--AVliDtaGry~~Q~~~~~~ 181 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-G------LKFPLAERLGAAALRGVGGTRNCD-WWF-TDE--AVLIDTAGRYTTQDSDPEE 181 (1169)
T ss_pred EEEEECCCCCCHHHHHHHC-C------CCCCCCCCCCHHHCCCCCCCCCCC-EEE-ECC--EEEEECCCCEECCCCCCHH
T ss_conf 5899789998668999837-9------988774100112215889985557-165-278--7999479760268886400
Q ss_pred -----HHHHHHHH--HHHHCCCCEEEEECCCC---CCCCCHHHHHHH--------HHHCCCC-CEEEEECCCCCCC-CHH
Q ss_conf -----02467798--77400233145201234---433210677888--------8631876-0233100233356-122
Q gi|254780263|r 82 -----ADYVKNMI--TGATQADGAILVCAAED---GPKPQTREHILL--------ARQIGIS-SIVVYMNKVDAVD-DDE 141 (392)
Q Consensus 82 -----~~f~~~mi--~g~~~~D~ailvVda~~---G~~~QT~eh~~l--------~~~lgi~-~iIv~iNKmD~v~-~~~ 141 (392)
..|++-.- |.-.-.+++||+||..+ +...+-..|+.. ...+|+. ++-|++||+|++. .++
T Consensus 182 d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~GF~e 261 (1169)
T TIGR03348 182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAGFEE 261 (1169)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHH
T ss_conf 18999999999986489899876899978999747899999999999999999999982998775998664012306999
Q ss_pred HHHH
Q ss_conf 2110
Q gi|254780263|r 142 LLDI 145 (392)
Q Consensus 142 ~~~~ 145 (392)
.|+.
T Consensus 262 ff~~ 265 (1169)
T TIGR03348 262 FFAD 265 (1169)
T ss_pred HHHH
T ss_conf 9985
No 357
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.99 E-value=0.002 Score=40.35 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEECCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 9984787302-4677987740023314520123443321067788886318760233100233356122
Q gi|254780263|r 74 SHIDCPGHAD-YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 74 ~iiD~PGH~~-f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
-+-+-|||-+ +.++.-.-+..+|.++-|+||.+-...+.. .+.+..+-+..++++||.|+++...
T Consensus 13 ~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~---~l~~~v~~k~~i~vlNK~DL~~~~~ 78 (322)
T COG1161 13 KIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP---ELERIVKEKPKLLVLNKADLAPKEV 78 (322)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC---CHHHHHCCCCCEEEEEHHHCCCHHH
T ss_conf 02556775199999998753667658997431268888873---0678855788359985132489999
No 358
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=96.98 E-value=0.002 Score=40.26 Aligned_cols=71 Identities=24% Similarity=0.395 Sum_probs=44.6
Q ss_pred HHCCCCEEEEECCCCCCCC-CHHHHHHHHHHCCCCCEEEEECCCCCCCCH-HHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 4002331452012344332-106778888631876023310023335612-22110123210011101453221023311
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKP-QTREHILLARQIGISSIVVYMNKVDAVDDD-ELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~-QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~-~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
++..|.+++|.+++....+ .-.+.+.++...|++++| ++||+|++++. +..+ +++.+ ....|++.+|
T Consensus 109 AANiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvi-vLnK~DL~~d~~~~~~----~~~~~------~~g~~v~~vS 177 (353)
T PRK01889 109 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVV-VLTKADLCEDVEEKIA----EVEAL------APGVPVLAVN 177 (353)
T ss_pred EECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCHHHHHH----HHHHH------CCCCEEEEEE
T ss_conf 97176899995289997978999999999986996799-9966556679999999----99985------5997599997
Q ss_pred EEEE
Q ss_conf 4676
Q gi|254780263|r 170 ALCA 173 (392)
Q Consensus 170 a~~g 173 (392)
+.++
T Consensus 178 a~~~ 181 (353)
T PRK01889 178 ALDG 181 (353)
T ss_pred CCCC
T ss_conf 8998
No 359
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.96 E-value=0.012 Score=35.44 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred HHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC--------CCCHHHHHHHHH----
Q ss_conf 86292063789998219908999847873024677987740023314520123443--------321067788886----
Q gi|254780263|r 53 KLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP--------KPQTREHILLAR---- 120 (392)
Q Consensus 53 ~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~--------~~QT~eh~~l~~---- 120 (392)
+.|..|.-+.-..|..++..+.++|++|-+.=-+.=+.-...+++.|.|++-++=- ...-.|.+.+-.
T Consensus 143 ~~R~~TtGI~e~~F~~~~~~~~~~DVGGQrseRkKWi~~Fe~V~aiiFvvsLs~yDq~l~Ed~~~Nrl~eSl~LF~~i~n 222 (317)
T cd00066 143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred HHHCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 87356788316999977767998516888443434688846776699885235323355566451789999999999974
Q ss_pred --HCCCCCEEEEECCCCCC
Q ss_conf --31876023310023335
Q gi|254780263|r 121 --QIGISSIVVYMNKVDAV 137 (392)
Q Consensus 121 --~lgi~~iIv~iNKmD~v 137 (392)
.+.-.++|+++||+|+-
T Consensus 223 ~~~f~~~~iiLflNK~Dlf 241 (317)
T cd00066 223 SRWFANTSIILFLNKKDLF 241 (317)
T ss_pred CHHHCCCCEEEEEECHHHH
T ss_conf 8745579889998576999
No 360
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.96 E-value=0.0018 Score=40.62 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=61.6
Q ss_pred CEEEEEEEECCCCCHHHHHHHHH-HHHHHHHHCC-CC------CCCCHHHHHCCCEEEEE---EEEEECCCEEEEEEECC
Q ss_conf 82799999046898878999999-8764442001-31------26868698629206378---99982199089998478
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAIT-KYYSEEKKEY-GD------IDSAPEEKLRGITIATA---HVSYETDKRFYSHIDCP 79 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~-~~~~~~~~~~-~~------~D~~~~E~~rGiTi~~~---~~~~~~~~~~i~iiD~P 79 (392)
+++.++++|--.-|||+|+-+.. ...-.+.... .. .|.. -+..+.. ..........+.|-||+
T Consensus 1 ~t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~pTv~~~~~~------~~~~~~~~~~~~~vdg~~v~L~iWDTA 74 (195)
T cd01873 1 ETIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQY------RVCQEVLERSRDVVDGVSVSLRLWDTF 74 (195)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------EEEEEECCCCEEEECCEEEEEEEEECC
T ss_conf 97799998789989899997787478765565666758866333331------344443022114218959999999789
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH------HHH-HHCCCCCEEEEECCCCCC
Q ss_conf 7302467798774002331452012344332106778------888-631876023310023335
Q gi|254780263|r 80 GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI------LLA-RQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 80 GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~------~l~-~~lgi~~iIv~iNKmD~v 137 (392)
|..++.+.+. -..+|+++||.|...- ++-+++ .+- ..-.+| +|++=||+|+-
T Consensus 75 G~~~~~r~~~--y~~~~~~ll~fdv~~~---~Sf~~v~~~W~~ei~~~~~~~p-iiLVG~K~DLr 133 (195)
T cd01873 75 GDHDKDRRFA--YGRSDVVLLCFSIASP---NSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLR 133 (195)
T ss_pred CCHHHCCCCC--CCCCCEEEEEEECCCC---HHHHHHHHHHHHHHHHHCCCCC-EEEEEECHHHC
T ss_conf 9620012143--5688899999966980---1489999999999998689998-89996375754
No 361
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.96 E-value=0.0049 Score=37.92 Aligned_cols=120 Identities=23% Similarity=0.219 Sum_probs=67.3
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHH----HHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 9999-046898878999999876444200131268686----98629206378999821990899984787302467798
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPE----EKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~----E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
|+++ |--.-||||+.--|-..+.+.+..-.-.|.... ..-.|.--+..+.-.+.-..-|.++|||.- +...++
T Consensus 2 Iav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~~~~vl~gD~viiD~ppg--~~~~~~ 79 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAG--IERGFI 79 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHCCCCCCEEEEECCCC--CCHHHH
T ss_conf 899739998709999999999999779918999589999983666176556653131126699999979999--888999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 77400233145201234433210677888863187602331002333
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
..+..+|.+++|+..+.--..-+.+.+.+++.++.+.+=+++|+.+.
T Consensus 80 ~~l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~~~~~vv~Nr~~~ 126 (179)
T cd02036 80 TAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred HHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99984681256378858899999999999982599646999845467
No 362
>KOG0410 consensus
Probab=96.94 E-value=0.0041 Score=38.39 Aligned_cols=145 Identities=26% Similarity=0.336 Sum_probs=82.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH-HHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC---------HH
Q ss_conf 99999046898878999999876-444200131268686986292063789998219908999847873---------02
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYY-SEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH---------AD 83 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~-~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH---------~~ 83 (392)
-|+++|-.++|||||+.+||+.. ..+.+-.+.+|.+.+- +. + -+++.+-+.||-|- +.
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~---------a~--L-psg~~vlltDTvGFisdLP~~LvaA 247 (410)
T KOG0410 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHS---------AH--L-PSGNFVLLTDTVGFISDLPIQLVAA 247 (410)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCHHHEECCCHHHH---------CC--C-CCCCEEEEEECHHHHHHCCHHHHHH
T ss_conf 2899963476688999998750058300011012531343---------00--7-9986799960346665474999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC-CCCCCHHHHHHHHHHCCCCC------EEEEECCCCCCCCHHHHHHCCCCCCEEEEE
Q ss_conf 46779877400233145201234-43321067788886318760------233100233356122211012321001110
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAED-GPKPQTREHILLARQIGISS------IVVYMNKVDAVDDDELLDISEYEIRDLLKE 156 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~-G~~~QT~eh~~l~~~lgi~~------iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~ 156 (392)
|- .++.-..-+|.-+=|+|.+. -++.|-...+..++.+|++. +|=+=||+|.... + .+.| +
T Consensus 248 F~-ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~---~--~e~E--~---- 315 (410)
T KOG0410 248 FQ-ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED---E--VEEE--K---- 315 (410)
T ss_pred HH-HHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC---C--CCCC--C----
T ss_conf 99-999987523448998615796688889899999974699847777678742123566556---6--7535--5----
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 145322102331146764114445652123320344310252
Q gi|254780263|r 157 HKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIP 198 (392)
Q Consensus 157 ~~~~~~~pii~~sa~~g~~~~n~~~~~~~~~~Ll~~i~~~~~ 198 (392)
++ .+++|+++| +.++.|+++++..+.
T Consensus 316 --n~----~v~isaltg----------dgl~el~~a~~~kv~ 341 (410)
T KOG0410 316 --NL----DVGISALTG----------DGLEELLKAEETKVA 341 (410)
T ss_pred --CC----CCCCCCCCC----------CCHHHHHHHHHHHHH
T ss_conf --78----514301567----------547999998888765
No 363
>KOG1534 consensus
Probab=96.92 E-value=0.0012 Score=41.69 Aligned_cols=124 Identities=18% Similarity=0.231 Sum_probs=67.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHCCCEEEE---------------E----EE--------
Q ss_conf 99999046898878999999876444200131--2686869862920637---------------8----99--------
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--IDSAPEEKLRGITIAT---------------A----HV-------- 64 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D~~~~E~~rGiTi~~---------------~----~~-------- 64 (392)
-.-++|-..+||||.++.+.......++.... +|--.+--.--.|||+ | ..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl~~ 84 (273)
T KOG1534 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYLLE 84 (273)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 58987467888430789999999862854588626878886089620028875218888888634998652038999997
Q ss_pred EEEC-----C--CEEEEEEECCC------CHHHHHHHHHHHHCCC---CEEEEECC------CCCCCCCHHHHHHHHHHC
Q ss_conf 9821-----9--90899984787------3024677987740023---31452012------344332106778888631
Q gi|254780263|r 65 SYET-----D--KRFYSHIDCPG------HADYVKNMITGATQAD---GAILVCAA------EDGPKPQTREHILLARQI 122 (392)
Q Consensus 65 ~~~~-----~--~~~i~iiD~PG------H~~f~~~mi~g~~~~D---~ailvVda------~~G~~~QT~eh~~l~~~l 122 (392)
+++| . .--|-+.|+|| |..-+++.++.+.+-+ +++.++++ .+-+.+-- -.+...-.+
T Consensus 85 NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~l-sAlsAMi~l 163 (273)
T KOG1534 85 NLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCL-SALSAMISL 163 (273)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCEEEEEECCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 7888775406756777998479816775447658999999840267446999960501111788999999-999999973
Q ss_pred CCCCEEEEECCCCCCCC
Q ss_conf 87602331002333561
Q gi|254780263|r 123 GISSIVVYMNKVDAVDD 139 (392)
Q Consensus 123 gi~~iIv~iNKmD~v~~ 139 (392)
-+|++=| ++|||+...
T Consensus 164 E~P~INv-lsKMDLlk~ 179 (273)
T KOG1534 164 EVPHINV-LSKMDLLKD 179 (273)
T ss_pred CCCCHHH-HHHHHHHHH
T ss_conf 6760224-468788645
No 364
>KOG2655 consensus
Probab=96.89 E-value=0.0029 Score=39.33 Aligned_cols=139 Identities=21% Similarity=0.301 Sum_probs=82.7
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCE--EEEEEECCCCHHHHHH--
Q ss_conf 279999904689887899999987644420013126868698629206378999821990--8999847873024677--
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKR--FYSHIDCPGHADYVKN-- 87 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~iiD~PGH~~f~~~-- 87 (392)
.+|+.++|--..||||++..|...... .....+..+.+..+..+|...-+..+-++. ++|++||||-.|++-|
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~---~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655 21 DFTLMVVGESGLGKSTFINSLFLTDLS---GNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 338998558876388999888865325---77666775567655311322323763797488767843699865446512
Q ss_pred -----------H----H---HHHH-------CCCCEEEEECCC-CCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf -----------9----8---7740-------023314520123-443321067788886318760233100233356122
Q gi|254780263|r 88 -----------M----I---TGAT-------QADGAILVCAAE-DGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 88 -----------m----i---~g~~-------~~D~ailvVda~-~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
. + .++. -+++||--|... .|+.|.-.+...-+. -+++ +|-+|-|.|....++
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vN-iIPVI~KaD~lT~~E 175 (366)
T KOG2655 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVN-LIPVIAKADTLTKDE 175 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHH-CCCC-CCCEEECCCCCCHHH
T ss_conf 43235678999999998602368865566884489999837888888686699999773-2566-103164056689899
Q ss_pred HHHHCCCCCCEEEEE
Q ss_conf 211012321001110
Q gi|254780263|r 142 LLDISEYEIRDLLKE 156 (392)
Q Consensus 142 ~~~~i~~~i~~~l~~ 156 (392)
+.... ..+.+.+..
T Consensus 176 l~~~K-~~I~~~i~~ 189 (366)
T KOG2655 176 LNQFK-KRIRQDIEE 189 (366)
T ss_pred HHHHH-HHHHHHHHH
T ss_conf 99999-999999887
No 365
>KOG0075 consensus
Probab=96.86 E-value=0.0017 Score=40.76 Aligned_cols=113 Identities=25% Similarity=0.279 Sum_probs=72.5
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHH
Q ss_conf 88279999904689887899999987-64442001312686869862920637899982199089998478730246779
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNM 88 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~m 88 (392)
|+...+.++|--.+||||++..+... +.. .-+-|.-.....+...+-.|-+-|.||...| +.|
T Consensus 18 k~emel~lvGLq~sGKtt~Vnvia~g~~~e---------------dmiptvGfnmrkvtkgnvtik~wD~gGq~rf-rsm 81 (186)
T KOG0075 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLE---------------DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF-RSM 81 (186)
T ss_pred HHEEEEEEEEECCCCCCEEEEEEECCCCHH---------------HHCCCCCCEEEEECCCCEEEEEEECCCCCCH-HHH
T ss_conf 761158888532478525888875067456---------------6430246326883158369999836997608-889
Q ss_pred -HHHHHCCCCEEEEECCCC-CCCCCHHHHHH-H---HHHCCCCCEEEEECCCCCCCC
Q ss_conf -877400233145201234-43321067788-8---863187602331002333561
Q gi|254780263|r 89 -ITGATQADGAILVCAAED-GPKPQTREHIL-L---ARQIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 89 -i~g~~~~D~ailvVda~~-G~~~QT~eh~~-l---~~~lgi~~iIv~iNKmD~v~~ 139 (392)
.+=-..+|+-+.+|||.+ +--+-.|+-+. + ...-|+| +.|.=||.|+-+.
T Consensus 82 WerycR~v~aivY~VDaad~~k~~~sR~EL~~LL~k~~l~gip-~LVLGnK~d~~~A 137 (186)
T KOG0075 82 WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHCCCC-EEEECCCCCCCCC
T ss_conf 9998603868999961678653431299999885032114871-7996255667553
No 366
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=96.82 E-value=0.00062 Score=43.46 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=43.8
Q ss_pred HHCCCCEEEEECCCCCCCCCH---HHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCC
Q ss_conf 400233145201234433210---67788886318760233100233356122211012321001110145322102331
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKPQT---REHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRG 168 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~QT---~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~ 168 (392)
|+..|-+++|+++. +.+.+ -+.+..|...||+++| ++||+|+++++++.+ ++. +-+.....+ .|++.+
T Consensus 120 AANIDqvlIV~A~~--P~~~~~liDRyLv~ae~~~I~pvI-vlNK~DL~~~~~~~~-~~~-~l~~Y~~lG----Y~v~~~ 190 (344)
T PRK12288 120 AANIDQIVIVSAVL--PELSLNIIDRYLVACETLGIEPLI-VLNKIDLLDDEERPF-VNE-QLDIYRNIG----YRVLMV 190 (344)
T ss_pred EEECCEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCEEE-EEECHHCCCHHHHHH-HHH-HHHHHHHCC----CEEEEE
T ss_conf 97168899999689--998978999999999986997799-973144089778999-999-999998679----739997
Q ss_pred EEEEE
Q ss_conf 14676
Q gi|254780263|r 169 SALCA 173 (392)
Q Consensus 169 sa~~g 173 (392)
|+.++
T Consensus 191 Sa~~~ 195 (344)
T PRK12288 191 SSHTG 195 (344)
T ss_pred ECCCC
T ss_conf 36886
No 367
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.76 E-value=0.013 Score=35.18 Aligned_cols=120 Identities=23% Similarity=0.385 Sum_probs=68.7
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC----CCCCCC------CHH--HHHCCCEEEEE-------EEEE----
Q ss_conf 882799999046898878999999876444200----131268------686--98629206378-------9998----
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE----YGDIDS------APE--EKLRGITIATA-------HVSY---- 66 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~----~~~~D~------~~~--E~~rGiTi~~~-------~~~~---- 66 (392)
||++ |.++|==..||||.++.|...+..++.. .+++.| +.. || -|+.+=.. ...|
T Consensus 138 ~p~V-il~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er-~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 138 KPFV-ILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGER-LGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCEE-EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH-HCCEEECCCCCCCCHHHHHHHHH
T ss_conf 8679-999934888637179999999997898699982334789999999999999-59927825999980899999999
Q ss_pred --ECCCEEEEEEECCC--C--HHHHHHH---HHHHHCCCC-----EEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEE
Q ss_conf --21990899984787--3--0246779---877400233-----1452012344332--10677888863187602331
Q gi|254780263|r 67 --ETDKRFYSHIDCPG--H--ADYVKNM---ITGATQADG-----AILVCAAEDGPKP--QTREHILLARQIGISSIVVY 130 (392)
Q Consensus 67 --~~~~~~i~iiD~PG--H--~~f~~~m---i~g~~~~D~-----ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~ 130 (392)
.-.++-+-|+||.| | ...+.++ .|-+.-.+. .+|++||..|-.. |.+. --.+.++. .++
T Consensus 216 ~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~---F~eav~l~-GiI- 290 (340)
T COG0552 216 AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI---FNEAVGLD-GII- 290 (340)
T ss_pred HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHH---HHHHCCCC-EEE-
T ss_conf 9997699999996755445736689999999998464568998428999775647568999999---98752886-699-
Q ss_pred ECCCCC
Q ss_conf 002333
Q gi|254780263|r 131 MNKVDA 136 (392)
Q Consensus 131 iNKmD~ 136 (392)
++|+|.
T Consensus 291 lTKlDg 296 (340)
T COG0552 291 LTKLDG 296 (340)
T ss_pred EEECCC
T ss_conf 970246
No 368
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=96.75 E-value=0.0064 Score=37.17 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCC---------CCHHHHHCCCEEEE---EE-----------EEEECCCEEEEEE
Q ss_conf 4689887899999987644420013126---------86869862920637---89-----------9982199089998
Q gi|254780263|r 20 HVDHGKTTLTAAITKYYSEEKKEYGDID---------SAPEEKLRGITIAT---AH-----------VSYETDKRFYSHI 76 (392)
Q Consensus 20 hvd~GKSTL~~~L~~~~~~~~~~~~~~D---------~~~~E~~rGiTi~~---~~-----------~~~~~~~~~i~ii 76 (392)
--.+||||+.=.|...+...+..-.-+| |.+.-..+|.--+. .. ..++.++|-|-||
T Consensus 10 KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VII 89 (231)
T pfam07015 10 KGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALA 89 (231)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99865999999999999968995999968998688999998764688887652220566015899999886579998998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH------HHHCCCCCEEEEECCCCC
Q ss_conf 478730246779877400233145201234433210677888------863187602331002333
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL------ARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l------~~~lgi~~iIv~iNKmD~ 136 (392)
|+||+.... +..+++.+|.+|+-+-.+.---.++-+-+.+ +....||+- |..|++=.
T Consensus 90 Dtpg~~s~~--~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~i~~~~~~~~~~ip~a-vl~tRv~~ 152 (231)
T pfam07015 90 DTHGGSSEL--NNTIIASSDLLLIPTMLTPLDIDEALATYRYVIELLLTENLAIPTA-ILRQRVPV 152 (231)
T ss_pred CCCCCCCHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCC
T ss_conf 399857589--9999997898997789982339999999999999999737899803-34551140
No 369
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.72 E-value=0.012 Score=35.41 Aligned_cols=124 Identities=20% Similarity=0.219 Sum_probs=73.0
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHH--HHHHC--CCCCCCC---HHHHH------CCCEEEEEEEE--E-----ECCCE
Q ss_conf 27999990468988789999998764--44200--1312686---86986------29206378999--8-----21990
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYS--EEKKE--YGDIDSA---PEEKL------RGITIATAHVS--Y-----ETDKR 71 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~--~~~~~--~~~~D~~---~~E~~------rGiTi~~~~~~--~-----~~~~~ 71 (392)
+-.|+.+|-...||||.+..|-..+. +.... .--+|+. ..|+- -|+.+.+.+.. | ...++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCC
T ss_conf 85799989988758879999999997532576068997144115289999999998699559963999999999985318
Q ss_pred EEEEEECCCC--HHH--HHHHHHHH--HCCCCEEEEECCCCCCCCCHH-HHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf 8999847873--024--67798774--002331452012344332106-77888863187602331002333561
Q gi|254780263|r 72 FYSHIDCPGH--ADY--VKNMITGA--TQADGAILVCAAEDGPKPQTR-EHILLARQIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 72 ~i~iiD~PGH--~~f--~~~mi~g~--~~~D~ailvVda~~G~~~QT~-eh~~l~~~lgi~~iIv~iNKmD~v~~ 139 (392)
.+.||||.|+ .|. +.+|..=+ +...-.-||++|+. ..+.. |-+.--+.+++..+| +||+|.+..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~~~~i~~~I--~TKlDET~s 353 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFSLFPIDGLI--FTKLDETTS 353 (407)
T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHHHHHHCCCCCCEEE--EECCCCCCC
T ss_conf 88999689988337899999999970356621799984576--468899999972458866168--971335676
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.71 E-value=0.0018 Score=40.58 Aligned_cols=57 Identities=23% Similarity=0.386 Sum_probs=41.5
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
+..++++++|....|||||+.+|.+... ..+. ..-|.|.+.....++ ..+.|+||||
T Consensus 98 ~~~~~i~ivG~PNVGKSsliN~L~~~~~------~~v~-----~~pGtTrd~~~i~~~---~~~~liDTpG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLK------LKVG-----NVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCE------EEEC-----CCCCCEECEEEEEEC---CCEEEEECCC
T ss_conf 5660899987777447789999847850------6266-----999838355999968---9989997929
No 371
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.71 E-value=0.0069 Score=36.97 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=63.2
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCC--------CHHH-HHCCCEEEE---EE-----------EEEECCC
Q ss_conf 9999-046898878999999876444200131268--------6869-862920637---89-----------9982199
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDS--------APEE-KLRGITIAT---AH-----------VSYETDK 70 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~--------~~~E-~~rGiTi~~---~~-----------~~~~~~~ 70 (392)
|.++ .--.+||||+.-.|...+...+..-.-+|. +.+. ...|...+. .. ...+..+
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~ 83 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQG 83 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCC
T ss_conf 99961899876999999999999978995999968998688999987652589887752340565257899998875369
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH------HHHCCCCCEEEEECCCCC
Q ss_conf 089998478730246779877400233145201234433210677888------863187602331002333
Q gi|254780263|r 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL------ARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 71 ~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l------~~~lgi~~iIv~iNKmD~ 136 (392)
+-|-|||+||+.+-. +...++.+|.+|+-+-.+.--.-++-+-+.+ ..-..+|+- |+.|++-.
T Consensus 84 ~D~VIIDtpg~~s~~--~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~i~~~~~~~~~~ip~~-vlltRv~a 152 (231)
T PRK13849 84 FDYALADTHGGSSEL--NNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTA-ILRQRVPV 152 (231)
T ss_pred CCEEEECCCCCCCHH--HHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEEECCH
T ss_conf 988998189977589--9999997898997799986679999999999999999728788656-66540504
No 372
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.70 E-value=0.0028 Score=39.37 Aligned_cols=81 Identities=23% Similarity=0.175 Sum_probs=54.9
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCC
Q ss_conf 08999847873024677987740023314520123443321067788886318760233100233356122211012321
Q gi|254780263|r 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEI 150 (392)
Q Consensus 71 ~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i 150 (392)
..+.|||+|-- -..++++++..+|+|++|--.+.--..-.++-+.++..+|+|..|| +||-+.-+. +..+..+++-
T Consensus 164 ~~~~IIDsaaG--~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iV-iNr~~~g~s-~ie~~~~e~g 239 (284)
T COG1149 164 ADLLIIDSAAG--TGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIV-INRYNLGDS-EIEEYCEEEG 239 (284)
T ss_pred CCEEEEECCCC--CCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE-EECCCCCCH-HHHHHHHHCC
T ss_conf 21258857997--8971777641687799981688523668999999999839954999-966777720-8999888739
Q ss_pred CEEEE
Q ss_conf 00111
Q gi|254780263|r 151 RDLLK 155 (392)
Q Consensus 151 ~~~l~ 155 (392)
-+++.
T Consensus 240 i~il~ 244 (284)
T COG1149 240 IPILG 244 (284)
T ss_pred CCEEE
T ss_conf 97268
No 373
>KOG0095 consensus
Probab=96.70 E-value=0.013 Score=35.23 Aligned_cols=125 Identities=22% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE----EEEECCCEEEEEEECCCCHHHH
Q ss_conf 882799999046898878999999876444200131268686986292063789----9982199089998478730246
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH----VSYETDKRFYSHIDCPGHADYV 85 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~----~~~~~~~~~i~iiD~PGH~~f~ 85 (392)
|=...|+.+|+..-|||-|+.+.++.+-.-+ .|-||-+.| ...+.++-++-|-||.|.+.|-
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppg--------------qgatigvdfmiktvev~gekiklqiwdtagqerfr 70 (213)
T KOG0095 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPG--------------QGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFR 70 (213)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHCCCCCCC--------------CCCEEEEEEEEEEEEECCEEEEEEEEECCCHHHHH
T ss_conf 0267899973577673300445522678999--------------87664233799999987808999984132568888
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHCCCC
Q ss_conf 779877400233145201234433-210677888863---1876023310023335612221101232
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPK-PQTREHILLARQ---IGISSIVVYMNKVDAVDDDELLDISEYE 149 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~-~QT~eh~~l~~~---lgi~~iIv~iNKmD~v~~~~~~~~i~~~ 149 (392)
.-+-.=-..|++-+||-|.+--+. .---|-+.-+.. -++-.+ .+=||+|+.+.-|..+.+-++
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlki-lvgnk~d~~drrevp~qigee 137 (213)
T KOG0095 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKI-LVGNKIDLADRREVPQQIGEE 137 (213)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEE-EECCCCCHHHHHHHHHHHHHH
T ss_conf 8899886411648999853457431013999999999850642787-614665612333305888788
No 374
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.68 E-value=0.0033 Score=38.93 Aligned_cols=146 Identities=23% Similarity=0.320 Sum_probs=70.9
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHH-----HCCCC--CCC-CHHHHHCCCEEEEEE--EEEE---------------CCC
Q ss_conf 9990468988789999998764442-----00131--268-686986292063789--9982---------------199
Q gi|254780263|r 16 STIGHVDHGKTTLTAAITKYYSEEK-----KEYGD--IDS-APEEKLRGITIATAH--VSYE---------------TDK 70 (392)
Q Consensus 16 ~~iGhvd~GKSTL~~~L~~~~~~~~-----~~~~~--~D~-~~~E~~rGiTi~~~~--~~~~---------------~~~ 70 (392)
.+-|--.||||||+.+|+....... .+.+. .|. .-.+..---..+++. .++. -++
T Consensus 5 vitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~~ 84 (323)
T COG0523 5 VITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRDR 84 (323)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHHHHHHCCCC
T ss_conf 98116779989999999854589807999855740221677641348975798369707870342158999999852568
Q ss_pred EEEEEEECCCCHH-------HHHH-HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
Q ss_conf 0899984787302-------4677-9877400233145201234433210677888863187602331002333561222
Q gi|254780263|r 71 RFYSHIDCPGHAD-------YVKN-MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDEL 142 (392)
Q Consensus 71 ~~i~iiD~PGH~~-------f~~~-mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~ 142 (392)
.-+-+|-+-|=++ |... -++.....|..+-||||...........-..-..+..--+| ++||.|++++++
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~i-vlNK~Dlv~~~~- 162 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVI-VLNKTDLVDAEE- 162 (323)
T ss_pred CCEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCEE-EEECCCCCCHHH-
T ss_conf 998999688777869999986065122454041336999847886545677999999999867999-983645689889-
Q ss_pred HHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 110123210011101453221023311
Q gi|254780263|r 143 LDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 143 ~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
.+.. +..+++. ++.++++..+
T Consensus 163 l~~l----~~~l~~l--np~A~i~~~~ 183 (323)
T COG0523 163 LEAL----EARLRKL--NPRARIIETS 183 (323)
T ss_pred HHHH----HHHHHHH--CCCCEEEECC
T ss_conf 9999----9999975--9998699812
No 375
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.67 E-value=0.0027 Score=39.54 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=41.3
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 0388279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
.++..++++++|-...|||||+.+|.+.-. ..+-. .-|.|-...+..+ +..+.++||||
T Consensus 98 ~~~~~i~v~ivG~PNVGKSSlIN~L~g~k~------~~vs~-----~PG~Tr~~q~i~~---~~~i~liDTPG 156 (157)
T cd01858 98 SDKKQISVGFIGYPNVGKSSIINTLRSKKV------CKVAP-----IPGETKVWQYITL---MKRIYLIDCPG 156 (157)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHCCCE------EEECC-----CCCEEEEEEEEEE---CCCEEEEECCC
T ss_conf 555646999982588533688988726735------88659-----8833777799996---89999996909
No 376
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.67 E-value=0.0032 Score=39.01 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=63.5
Q ss_pred EEEEEEEECCCEEE-EEEECCCCHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 37899982199089-9984787302467798774-002331452012344332106778888631876023310023335
Q gi|254780263|r 60 ATAHVSYETDKRFY-SHIDCPGHADYVKNMITGA-TQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 60 ~~~~~~~~~~~~~i-~iiD~PGH~~f~~~mi~g~-~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
.++.++|...+|.- .-+..| -.||.+ ++..+ ......+.|||+.+-...--. .+.+.+|-+++++++||+|+.
T Consensus 29 ~~CqRCf~L~hY~~~~~~~~~-~~d~~~-~l~~i~~~~~lVv~VvDi~Df~gS~~~---~l~~~~~~~~v~lV~NK~DLL 103 (360)
T TIGR03597 29 VYCQRCFRLKHYNEIQDVELN-DDDFLN-LLNSLGDSNALIVYVVDIFDFEGSLIP---ELKRFVGGNPVLLVGNKIDLL 103 (360)
T ss_pred EEEHHHHHHHCCCCCCCCCCC-HHHHHH-HHHHHCCCCCEEEEEEECCCCCCCHHH---HHHHHHCCCCEEEEEEHHHCC
T ss_conf 885103155536856667799-899999-998742368379999864147765346---499983898589999805428
Q ss_pred CCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEEC
Q ss_conf 612221101232100111014532210233114676411
Q gi|254780263|r 138 DDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQG 176 (392)
Q Consensus 138 ~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~~ 176 (392)
..+-..+.+.+-+++.+++.+... ..++-+||..++..
T Consensus 104 P~~~~~~~i~~wv~~~~~~~gl~~-~~V~lvSa~~g~gi 141 (360)
T TIGR03597 104 PKSVNLSKIKEWMKKRAKELGLKP-VDIILVSAKKGNGI 141 (360)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCCH
T ss_conf 876787999999999999859983-66899968889899
No 377
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.66 E-value=0.0012 Score=41.69 Aligned_cols=62 Identities=27% Similarity=0.361 Sum_probs=43.7
Q ss_pred CCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEE
Q ss_conf 02331452012344332--1067788886318760233100233356122211012321001110145
Q gi|254780263|r 94 QADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY 159 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~ 159 (392)
..|-+++|+++.+..+. +--+.|.++...||.++| ++||||++++++... .+......+.+|
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvI-vlnK~DL~~~~~~~~---~~~~~~y~~~gy 142 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVI-VLNKIDLLDDEEAAV---KELLREYEDIGY 142 (301)
T ss_pred CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE-EEECCCCCCCHHHHH---HHHHHHHHHCCE
T ss_conf 6551999996268998988999999999776995799-997533676167789---999999986793
No 378
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.022 Score=33.85 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=8.7
Q ss_pred EEEEEECCCCCHHHHHHHHH
Q ss_conf 99999046898878999999
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAIT 33 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~ 33 (392)
.||.+|-..-||||.+..|-
T Consensus 243 ~IALVGPTGVGKTTTIAKLA 262 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79998999988899999999
No 379
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.62 E-value=0.0017 Score=40.69 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCC-CCEEECHHEEE
Q ss_conf 00135544543014874245348967999506874321254121001211443210013666411245-43220211773
Q gi|254780263|r 214 GSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVN-RADVPRGRVVC 292 (392)
Q Consensus 214 ~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~-~~di~rGdvl~ 292 (392)
.+|+.+. +.++.-+|..|+++.|..+ +.. ++.. ..++.||+.+++++++|..|+-||+.+.|.- --++.-||+|.
T Consensus 474 ~VFr~s~-p~I~Gv~V~~G~ik~g~~l-~~~-dg~~-iG~I~SLk~~k~dV~Ev~~G~EcgI~Ieg~t~GR~~~e~D~ly 549 (592)
T PRK04004 474 YVFRQSK-PAIVGVEVLGGTIKPGVPL-IKE-DGKR-VGTIKQIQDRGENIKEAKAGMEVAISIDGPTVGRQIKEGDVLY 549 (592)
T ss_pred EEEECCC-CEEEEEEEEEEEEECCCEE-EEC-CCCE-EEEEEEHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCCCEEE
T ss_conf 1572699-8699999864689669869-904-9919-9898105213876545268977999964772067778998799
Q ss_pred C
Q ss_conf 2
Q gi|254780263|r 293 A 293 (392)
Q Consensus 293 ~ 293 (392)
+
T Consensus 550 s 550 (592)
T PRK04004 550 V 550 (592)
T ss_pred E
T ss_conf 9
No 380
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=96.58 E-value=0.0016 Score=40.85 Aligned_cols=16 Identities=31% Similarity=0.690 Sum_probs=8.1
Q ss_pred CCCCCCCEEEEEECCC
Q ss_conf 4534896799950687
Q gi|254780263|r 232 GRIKAGSDVEIIGMGG 247 (392)
Q Consensus 232 G~l~~Gd~i~i~p~~~ 247 (392)
..++.|.++.+++++|
T Consensus 189 ~~l~~GkT~vl~G~SG 204 (353)
T PRK01889 189 AWLKPGKTVALLGSSG 204 (353)
T ss_pred HHHHCCCEEEEECCCC
T ss_conf 9863497899977888
No 381
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.016 Score=34.78 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=24.3
Q ss_pred CCCCCCC-EEEEEEEC-CCCCC-CEEEEEECCCCCCCEEEECCCCC----CCCCCCCCCCHHHHHHHC
Q ss_conf 5544543-01487424-53489-67999506874321254121001----211443210013666411
Q gi|254780263|r 218 IEGRGTV-VTGCIKRG-RIKAG-SDVEIIGMGGKKLKVKCTDVEMF----RKKLDEAIAGDNVGLLLR 278 (392)
Q Consensus 218 i~g~G~V-v~GrV~sG-~l~~G-d~i~i~p~~~~~~~~kv~si~~~----~~~v~~a~aGd~v~l~Lk 278 (392)
..|+|.. ...|+... .++-| ++|-++..+ .+...-..++.+| +.++..+...+-..-.|.
T Consensus 356 pTGvGKTTT~aKlAa~~~~~~g~~~valit~D-tyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~ 422 (557)
T PRK12727 356 PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE 422 (557)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHH
T ss_conf 77767311799999999997399818999726-64087999999999983975798289999999999
No 382
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=96.53 E-value=0.00094 Score=42.34 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=47.5
Q ss_pred HHCCCCEEEEECCCCCCCC--CHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 4002331452012344332--10677888863187602331002333561222110123210011101453221023311
Q gi|254780263|r 92 ATQADGAILVCAAEDGPKP--QTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 92 ~~~~D~ailvVda~~G~~~--QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
++.+|-+++|+++.+.... +--+.+..|...+|+. ++++||+|++++++... +.+.+...|| +.+.+|
T Consensus 86 VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~-vivlnK~DL~~~~e~~~-----~~~~~~~~GY----~~i~iS 155 (351)
T PRK12289 86 IANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEI-QLCLNKADLVSPTQQQQ-----WQDRLAQWGY----QPLFIS 155 (351)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCE-EEEEEHHHCCCHHHHHH-----HHHHHHHCCC----CEEEEE
T ss_conf 5670359999965789988779999999999879978-99986577499899999-----9999997798----289996
Q ss_pred EEEE
Q ss_conf 4676
Q gi|254780263|r 170 ALCA 173 (392)
Q Consensus 170 a~~g 173 (392)
+.++
T Consensus 156 ~~~~ 159 (351)
T PRK12289 156 VEQG 159 (351)
T ss_pred CCCC
T ss_conf 7899
No 383
>PRK09601 translation-associated GTPase; Reviewed
Probab=96.41 E-value=0.012 Score=35.39 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=49.3
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE--EEEEE------------ECCC---EEEEE
Q ss_conf 7999990468988789999998764442001312686869862920637--89998------------2199---08999
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT--AHVSY------------ETDK---RFYSH 75 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~------------~~~~---~~i~i 75 (392)
+.++++|=...|||||-.+||+.....+ .+. --||+. +.+.. ..++ -.+.|
T Consensus 3 mkiGivGlPnvGKSTlFnalT~~~~~~~-nyP-----------f~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~ 70 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAA-NYP-----------FCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEF 70 (364)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC-CCC-----------CCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 2488877999988999999967998645-899-----------8887880068857854589998762876501125899
Q ss_pred EECCCCHH------HHHH-HHHHHHCCCCEEEEECCCC
Q ss_conf 84787302------4677-9877400233145201234
Q gi|254780263|r 76 IDCPGHAD------YVKN-MITGATQADGAILVCAAED 106 (392)
Q Consensus 76 iD~PGH~~------f~~~-mi~g~~~~D~ailvVda~~ 106 (392)
+|.||-.. -++| -+.-++++|+-+.||+|-+
T Consensus 71 vDiaGLv~gAs~G~GLGN~FL~~iR~~DaiihVVr~F~ 108 (364)
T PRK09601 71 VDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEEECCC
T ss_conf 96577678753467742899998873475677500026
No 384
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.41 E-value=0.0015 Score=41.00 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=7.3
Q ss_pred EEEEECCCCCHHHHHHHHH
Q ss_conf 9999046898878999999
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAIT 33 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~ 33 (392)
+-++|..++|||||+.+|+
T Consensus 157 vyvvG~tNvGKSTliN~Ll 175 (360)
T TIGR03597 157 VYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 8999168665899999998
No 385
>KOG3905 consensus
Probab=96.35 E-value=0.0052 Score=37.73 Aligned_cols=141 Identities=24% Similarity=0.296 Sum_probs=75.7
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHH---HHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEE-CCCCHHHHHHH
Q ss_conf 7999990468988789999998764---4420013126868698629206378999821990899984-78730246779
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYS---EEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHID-CPGHADYVKNM 88 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~---~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD-~PGH~~f~~~m 88 (392)
-|+.++|--.+|||||+.+|-+.-. ..+-+...++-.++-|.- .-...+=++| -|+|...++-.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd------------~tr~~VWiLDGd~~h~~LLk~a 120 (473)
T KOG3905 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDD------------LTRCNVWILDGDLYHKGLLKFA 120 (473)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH------------HHHCCEEEECCCHHHHHHHHHC
T ss_conf 7489973688860588887515655677877505898624423002------------3306648865856665577640
Q ss_pred HHHHHCCCC-EEEEECCCCCCC--------------------------------------------------CCHH----
Q ss_conf 877400233-145201234433--------------------------------------------------2106----
Q gi|254780263|r 89 ITGATQADG-AILVCAAEDGPK--------------------------------------------------PQTR---- 113 (392)
Q Consensus 89 i~g~~~~D~-ailvVda~~G~~--------------------------------------------------~QT~---- 113 (392)
+.+.+.++. +||++|-+..|. ||-+
T Consensus 121 l~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~ 200 (473)
T KOG3905 121 LPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVV 200 (473)
T ss_pred CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 56667343289999745882779999999999999998850499999999999999889985481336889842243454
Q ss_pred -----HHHH-------HHHHCCCCCEEEEECCCCCCCC--------HHHHHHCCCCCCEEEEEEEEEEEEECCCCEE
Q ss_conf -----7788-------8863187602331002333561--------2221101232100111014532210233114
Q gi|254780263|r 114 -----EHIL-------LARQIGISSIVVYMNKVDAVDD--------DELLDISEYEIRDLLKEHKYSDDTPIIRGSA 170 (392)
Q Consensus 114 -----eh~~-------l~~~lgi~~iIv~iNKmD~v~~--------~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa 170 (392)
||.. |...+||+ ++|+++|.|.+.- |+-|+.+...+++|.-.+|. ..|+.|.
T Consensus 201 ~~~~de~~llPL~~dtLt~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga----aLiyTSv 272 (473)
T KOG3905 201 GSSADEHVLLPLGQDTLTHNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA----ALIYTSV 272 (473)
T ss_pred CCCCCCCCCCCCCCCCHHHCCCCC-EEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCC----EEEEEEC
T ss_conf 676543220446776112127974-79999534236676530100588899999999999987084----3688521
No 386
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.34 E-value=0.0072 Score=36.87 Aligned_cols=65 Identities=22% Similarity=0.160 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEE
Q ss_conf 68988789999998764442001312686869862920637899982199089998478730246779877400233145
Q gi|254780263|r 21 VDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAIL 100 (392)
Q Consensus 21 vd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ail 100 (392)
-..||||+.-.|...+...+..-.-.|.-++ |-+.|||||++..- .+..++..+|.+++
T Consensus 9 GGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ-------------------yD~iiIDtpp~~~~--~~~~al~~aD~vii 67 (104)
T cd02042 9 GGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTRNALAAADLVLI 67 (104)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCC-------------------CCEEEEECCCCCCH--HHHHHHHHCCEEEE
T ss_conf 9876899999999999977992999977988-------------------88899979499989--99999997899999
Q ss_pred EECCCC
Q ss_conf 201234
Q gi|254780263|r 101 VCAAED 106 (392)
Q Consensus 101 vVda~~ 106 (392)
.+..+.
T Consensus 68 P~~p~~ 73 (104)
T cd02042 68 PVQPSP 73 (104)
T ss_pred ECCCCH
T ss_conf 836988
No 387
>KOG2485 consensus
Probab=96.30 E-value=0.015 Score=34.90 Aligned_cols=71 Identities=18% Similarity=0.130 Sum_probs=44.0
Q ss_pred ECCCEEEEEEECCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 21990899984787302-467798774002331452012344332106778888631876023310023335612
Q gi|254780263|r 67 ETDKRFYSHIDCPGHAD-YVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 67 ~~~~~~i~iiD~PGH~~-f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
++..+.-..=+-|||-. =+|.+-.-+.++|+.|=|=||+-....-- -.+-+.++.++=|+++||||++++.
T Consensus 18 ~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn---~~~~~~~~~k~riiVlNK~DLad~~ 89 (335)
T KOG2485 18 IFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN---ELFQDFLPPKPRIIVLNKMDLADPK 89 (335)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC---HHHHHHCCCCCEEEEEECCCCCCCH
T ss_conf 23112886565764789999999865565537999611346776554---8889733777549998401036833
No 388
>KOG0082 consensus
Probab=96.24 E-value=0.089 Score=30.07 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=49.8
Q ss_pred HCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-----CCH-H--HHHHHHHH----
Q ss_conf 62920637899982199089998478730246779877400233145201234433-----210-6--77888863----
Q gi|254780263|r 54 LRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPK-----PQT-R--EHILLARQ---- 121 (392)
Q Consensus 54 ~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~-----~QT-~--eh~~l~~~---- 121 (392)
.|--|--+....|+.++.++-+.|++|++.=-+.=+.---.+++.|+||+-++=-+ .+| | |-+.|-..
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred HCCCCCCEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 41676774589998679844897079768876337775168987999976433300101454104899999999999648
Q ss_pred --CCCCCEEEEECCCCCC
Q ss_conf --1876023310023335
Q gi|254780263|r 122 --IGISSIVVYMNKVDAV 137 (392)
Q Consensus 122 --lgi~~iIv~iNKmD~v 137 (392)
+--..+|.++||+|+-
T Consensus 258 ~~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082 258 KWFANTSIILFLNKKDLF 275 (354)
T ss_pred CCCCCCCEEEEEECHHHH
T ss_conf 032247279996238878
No 389
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=96.22 E-value=0.011 Score=35.64 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=11.8
Q ss_pred CEEEEEEECCCC--HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 908999847873--024677987740023314520
Q gi|254780263|r 70 KRFYSHIDCPGH--ADYVKNMITGATQADGAILVC 102 (392)
Q Consensus 70 ~~~i~iiD~PGH--~~f~~~mi~g~~~~D~ailvV 102 (392)
++++-+-|.-|. .=+++--+..+..-|-++..-
T Consensus 51 G~~~~Ve~~~G~~~rC~~R~~~~~lV~GDrV~w~~ 85 (344)
T PRK12288 51 GQHADVEAADGEVHRCNIRRTIRSLVTGDRVVWRP 85 (344)
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEC
T ss_conf 73799987999699987257378774288899932
No 390
>KOG4252 consensus
Probab=96.22 E-value=0.0022 Score=40.08 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=74.6
Q ss_pred CCHHHHHCCCCEEEEEEEECCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECC
Q ss_conf 961242103882799999046898878999999-8764442001312686869862920637899982199089998478
Q gi|254780263|r 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAIT-KYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCP 79 (392)
Q Consensus 1 m~~~~~~~~k~~~ni~~iGhvd~GKSTL~~~L~-~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~P 79 (392)
|-+..+++- +.++|+|+-.-||||++.+.- +.+.+.-++.-..|.+. |+ |-+ .-++.++-+-|+.
T Consensus 12 m~e~d~e~a---iK~vivGng~VGKssmiqryCkgifTkdykktIgvdfle--rq--i~v-------~~Edvr~mlWdta 77 (246)
T KOG4252 12 MDETDYERA---IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLE--RQ--IKV-------LIEDVRSMLWDTA 77 (246)
T ss_pred CCCHHHHHH---EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHH--HH--HHH-------HHHHHHHHHHHHC
T ss_conf 880324553---789998788624689999985244556654000323526--77--774-------0899999998722
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHH--HHHCCCCCEEEEECCCCCCCCHHH-HHHCCC
Q ss_conf 7302467798774002331452012344-33210677888--863187602331002333561222-110123
Q gi|254780263|r 80 GHADYVKNMITGATQADGAILVCAAEDG-PKPQTREHILL--ARQIGISSIVVYMNKVDAVDDDEL-LDISEY 148 (392)
Q Consensus 80 GH~~f~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l--~~~lgi~~iIv~iNKmD~v~~~~~-~~~i~~ 148 (392)
|.+.|-.=+-+=-..|.+++||.+.++- -+.-|.+--.- ...-.|| .+++-||+|++++... .++++.
T Consensus 78 gqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds~~~~~evE~ 149 (246)
T KOG4252 78 GQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDSQMDKGEVEG 149 (246)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCHHHHHHHCCHHHHHH
T ss_conf 3166778999874256404899854517778999999999998755687-58764220056765213588899
No 391
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.22 E-value=0.0098 Score=36.03 Aligned_cols=58 Identities=26% Similarity=0.279 Sum_probs=39.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
-|+++|.-++|||||+.+|...+. +||..+- .....++.+.+ |.||-..| +---+||.
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~----------------~~G~rV~----~IKH~~H~f~~-D~pGkDS~-r~r~AGA~ 61 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALC----------------ARGIRPG----LIKHTHHDMDV-DKPGKDSY-ELRKAGAA 61 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH----------------HCCCEEE----EEECCCCCCCC-CCCCCCCH-HHHHHCCC
T ss_conf 799994699999999999999999----------------8798499----99457778889-99984109-99973266
No 392
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=96.20 E-value=0.01 Score=35.98 Aligned_cols=71 Identities=20% Similarity=0.157 Sum_probs=49.3
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 9908999847873024677987740023314520123443321067788886318760233100233356122
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
+++-|.++|+|+--. ..+...+..+|.+++++....--..-++.-+.+++.++++.+=+++||.|.-+...
T Consensus 111 ~~~D~viiD~pp~~~--~~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~~~~l~~~~~gvV~N~~~~~~~~~ 181 (212)
T pfam01656 111 LAYDYVIIDGAPGLG--ELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNKVDRGDERH 181 (212)
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
T ss_conf 049989994799755--99999998399899994897699999999999999859962299991488998366
No 393
>PHA02518 ParA-like protein; Provisional
Probab=96.18 E-value=0.014 Score=35.03 Aligned_cols=120 Identities=14% Similarity=0.171 Sum_probs=61.1
Q ss_pred EEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCCCC--------CHHHHHCCCE-EEEEEE--EE------ECCCEEEEEE
Q ss_conf 99990-46898878999999876444200131268--------6869862920-637899--98------2199089998
Q gi|254780263|r 15 LSTIG-HVDHGKTTLTAAITKYYSEEKKEYGDIDS--------APEEKLRGIT-IATAHV--SY------ETDKRFYSHI 76 (392)
Q Consensus 15 i~~iG-hvd~GKSTL~~~L~~~~~~~~~~~~~~D~--------~~~E~~rGiT-i~~~~~--~~------~~~~~~i~ii 76 (392)
|+++. --..||||+.=.|-..+...+..-.-+|. +-+.|+.+-. +..... .+ ..++|-+-||
T Consensus 3 Iav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viI 82 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVV 82 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEE
T ss_conf 99980899974999999999999978994899977999678899985226899740121367799999974067888998
Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCCC-C--CCCHHHHHHHHHHC--CCCCEEEEECCCCC
Q ss_conf 4787302467798774002331452012344-3--32106778888631--87602331002333
Q gi|254780263|r 77 DCPGHADYVKNMITGATQADGAILVCAAEDG-P--KPQTREHILLARQI--GISSIVVYMNKVDA 136 (392)
Q Consensus 77 D~PGH~~f~~~mi~g~~~~D~ailvVda~~G-~--~~QT~eh~~l~~~l--gi~~iIv~iNKmD~ 136 (392)
||||+.. ..+..++..+|.+|+-+..+.- + ..++.+.+.-++.. +.+.+.++.|..+.
T Consensus 83 D~pp~~~--~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~ 145 (211)
T PHA02518 83 DGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred CCCCCCH--HHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 8999742--99999999589699963786878999999999999999866567516888623586
No 394
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=96.18 E-value=0.013 Score=35.37 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=60.2
Q ss_pred EEEEEEEECCCEEEEEEECCC-CHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 378999821990899984787-302467798774002-331452012344332106778888631876023310023335
Q gi|254780263|r 60 ATAHVSYETDKRFYSHIDCPG-HADYVKNMITGATQA-DGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 60 ~~~~~~~~~~~~~i~iiD~PG-H~~f~~~mi~g~~~~-D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
-++.++|...+|.- +.+..- -.||. +++..+... -.++.|||..+-...-- -.+.+.+|=+++++++||+|+.
T Consensus 37 ~~CqRCf~L~hY~~-~~~~~~~~~d~~-~~l~~i~~~~~lvv~VvDi~Df~gS~~---~~l~~~ig~~~vilV~NKvDLL 111 (367)
T PRK13796 37 VYCQRCFRLRHYNE-IQDVSLTDDDFL-RLLNGIGDSDALVVNVVDIFDFNGSWI---PGLHRFVGNNPVLLVGNKADLL 111 (367)
T ss_pred EEEHHHCHHHCCCC-CCCCCCCHHHHH-HHHHHHCCCCCEEEEEEECCCCCCCHH---HHHHHHHCCCCEEEEEECHHCC
T ss_conf 88021033341683-456768879999-999862536708999997445776513---5089871898489999823338
Q ss_pred CCHHHHHHCCCCCCEEEEEEEEEEEEECCCCEEEEEEE
Q ss_conf 61222110123210011101453221023311467641
Q gi|254780263|r 138 DDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQ 175 (392)
Q Consensus 138 ~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~sa~~g~~ 175 (392)
..+-..+.++.-+++.+++.+... ..++-+||.+++.
T Consensus 112 P~~~~~~~~~~wv~~~~~~~gl~~-~dV~lvSak~g~g 148 (367)
T PRK13796 112 PKSVKKNKVKNWLRQEAKELGLRP-VDVVLISAQKGQG 148 (367)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCC-CCEEEEECCCCCC
T ss_conf 876787899999999999759985-5289994657889
No 395
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.077 Score=30.49 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=50.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH-HHHCCCC--CCCC---HHHHH------CCCEEEEEEEE------EECCCEEEEEE
Q ss_conf 999904689887899999987644-4200131--2686---86986------29206378999------82199089998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSE-EKKEYGD--IDSA---PEEKL------RGITIATAHVS------YETDKRFYSHI 76 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~-~~~~~~~--~D~~---~~E~~------rGiTi~~~~~~------~~~~~~~i~ii 76 (392)
|+++|-..-||||.+..|-..+.- +++.-+- +|+. ..||- -|+-+.+.+.. +.-.++.+.||
T Consensus 226 i~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~al~~~~~DlILI 305 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILI 305 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHCCCCEEEE
T ss_conf 99989999888999999999999974992799952665377999999999985994599518999999998569999999
Q ss_pred ECCC--CHHH--H---HHHHHHHHCC--CCEEEEECCCCCCCCCHHHHHHHH---HHCCCCCEEEEECCCCCCC
Q ss_conf 4787--3024--6---7798774002--331452012344332106778888---6318760233100233356
Q gi|254780263|r 77 DCPG--HADY--V---KNMITGATQA--DGAILVCAAEDGPKPQTREHILLA---RQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 77 D~PG--H~~f--~---~~mi~g~~~~--D~ailvVda~~G~~~QT~eh~~l~---~~lgi~~iIv~iNKmD~v~ 138 (392)
||+| |+|. + ++.+...... .-..||+||+..-. +-..++ ..+++..+| .||+|...
T Consensus 306 DTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~----dl~~ii~~f~~l~~~~lI--fTKLDET~ 373 (432)
T PRK12724 306 DTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH----HTLTVLKAYESLNYRRIL--LTKLDEAD 373 (432)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHH----HHHHHHHHHCCCCCCEEE--EEECCCCC
T ss_conf 299989789999999999998636678851799997889989----999999984269998499--97122779
No 396
>KOG0395 consensus
Probab=96.18 E-value=0.0091 Score=36.21 Aligned_cols=138 Identities=24% Similarity=0.230 Sum_probs=75.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE---EEECCCEEEEEEECCCCHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899---9821990899984787302467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV---SYETDKRFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~---~~~~~~~~i~iiD~PGH~~f~~~mi 89 (392)
.+++++|.-.-|||.|+-+..+..-.. ..| -||.-.|. ....+...+.|+||+|-++|..---
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f~~-----~y~---------ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~ 69 (196)
T KOG0395 4 YKVVVLGAGGVGKSALTIQFLTGRFVE-----DYD---------PTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD 69 (196)
T ss_pred EEEEEECCCCCCCCCEEEEECCCCCCC-----CCC---------CCCCCCEEEEEEECCEEEEEEEEECCCCCCCHHHHH
T ss_conf 479997789888530578963575544-----347---------976763159999899788999982888534768888
Q ss_pred HHHHCCCCEEEEECCCC-CCC---CCHHHHHHHH-HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEE
Q ss_conf 77400233145201234-433---2106778888-631876023310023335612221101232100111014532210
Q gi|254780263|r 90 TGATQADGAILVCAAED-GPK---PQTREHILLA-RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~-G~~---~QT~eh~~l~-~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~p 164 (392)
.-+..+|+-++|.+.++ .-+ .+.++++.-. ..-.+| ++++-||.|+... +. ...++-..+-.. -..+
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~--R~-V~~eeg~~la~~----~~~~ 141 (196)
T KOG0395 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE--RQ-VSEEEGKALARS----WGCA 141 (196)
T ss_pred HHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEEECCCCHHH--CC-CCHHHHHHHHHH----HCCC
T ss_conf 77554868999998988889999999999998640767788-7999885553230--42-439999999997----0996
Q ss_pred CCCCEEEE
Q ss_conf 23311467
Q gi|254780263|r 165 IIRGSALC 172 (392)
Q Consensus 165 ii~~sa~~ 172 (392)
++.+||..
T Consensus 142 f~E~Sak~ 149 (196)
T KOG0395 142 FIETSAKL 149 (196)
T ss_pred EEEEECCC
T ss_conf 79975144
No 397
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.14 E-value=0.025 Score=33.55 Aligned_cols=74 Identities=26% Similarity=0.208 Sum_probs=51.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHH-HHHHHH
Q ss_conf 9999046898878999999876444200131268686986292063789998219908999847873024677-987740
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKN-MITGAT 93 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~-mi~g~~ 93 (392)
+++.|.-+.||||+.-.|...+.+.+..-.-.| .+-++|+||..+.... ......
T Consensus 2 i~~~~~kGvGKTT~a~~La~~la~~g~~Vl~vD------------------------d~iiiD~~~~~~~~~~~~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID------------------------DYVLIDTPPGLGLLVLLCLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEC------------------------CCEEECCCCCCCHHHHHHHHHHH
T ss_conf 898589977689999999999998899699986------------------------71788589988846899998787
Q ss_pred CCCCEEEEECCCCCCCCCH
Q ss_conf 0233145201234433210
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQT 112 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT 112 (392)
.+|..++++.+........
T Consensus 58 ~~~~~i~~~~~~~~~~~~~ 76 (99)
T cd01983 58 AADLVIIVTTPEALAVLGA 76 (99)
T ss_pred HCCEEEEECCCCHHHHHHH
T ss_conf 5895899659848899999
No 398
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed
Probab=96.08 E-value=0.045 Score=31.90 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=65.0
Q ss_pred CCCCCCCCCCHHHHHHHCC------CCCCEEECHHEEECCCCCCCCEEEEE-EEEEEECCCCCCCCCCCCCCEEEEEECC
Q ss_conf 2114432100136664112------45432202117732677763000168-9997105678755551159789999541
Q gi|254780263|r 261 RKKLDEAIAGDNVGLLLRG------VNRADVPRGRVVCAPGSIQEYSRFRA-SVYILTASEGGRTTGFMDNYRPQFFMDT 333 (392)
Q Consensus 261 ~~~v~~a~aGd~v~l~Lkg------i~~~di~rGdvl~~~~~~~~~~~f~A-~i~il~~~~~~~~~~~~~~~~~~~~~~~ 333 (392)
|+-+-.-.-||+-||.+.+ +-.+|..+..|+..+.+-.....|.+ .+.|+...++..+ + ....++-...
T Consensus 230 H~G~~~yTIGQRkGLgi~~~~~p~yV~~id~~~N~v~Vg~~~~L~~~~~~~~~~nwi~~~~~~~~--~--~~~vkiRy~~ 305 (355)
T PRK00143 230 HDGLMYYTIGQRKGLGIGGSGEPWYVVGKDLKNNIVYVGDHEALYSRELIASDLNWVSGEPPEEP--F--ECTAKVRYRQ 305 (355)
T ss_pred ECCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHCCCEEEEEEEEECCCCCCCCC--E--EEEEEECCCC
T ss_conf 86955687044145676889986899998378899999782884358599972377789899998--5--9999985699
Q ss_pred EEEEEEEEECCCHHHHCCCCEEEEEEEECCCEE-ECCCCEEEEEECCEEEEEEEEEEEE
Q ss_conf 477799996189557078976999999778177-5469849999899699989995531
Q gi|254780263|r 334 ADVTGRIILSPGSQAVMPGDRVDLEVELIYPIA-MEPNQTFSMREGGKTVGAGLILEII 391 (392)
Q Consensus 334 ~~v~~~i~~~~~~~~i~~g~~~~v~l~l~~pi~-~e~~~rfilRd~~~tig~G~I~~v~ 391 (392)
.-+.|++....+. .+.++|++|.. +-||+..++=++.+.+|+|.|.+++
T Consensus 306 ~~~~~~v~~~~~~---------~~~v~f~~p~~avaPGQ~~VfY~~d~vLGGG~I~~~~ 355 (355)
T PRK00143 306 PDVPCTVTPLDDG---------RVKVIFDEPQRAVTPGQAAVFYDGDVCLGGGIIERAY 355 (355)
T ss_pred CCCCEEEEEECCC---------EEEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEEEC
T ss_conf 7828799992599---------7999949997678998389999799999869998609
No 399
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=96.06 E-value=0.0034 Score=38.87 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=13.6
Q ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 089998478730246779877400233145201
Q gi|254780263|r 71 RFYSHIDCPGHADYVKNMITGATQADGAILVCA 103 (392)
Q Consensus 71 ~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVd 103 (392)
+.+.+.|-|| .|++++.+-+..-+ .++|+.
T Consensus 77 ~VvDi~Df~g--S~~~~l~~~ig~~~-vilV~N 106 (367)
T PRK13796 77 NVVDIFDFNG--SWIPGLHRFVGNNP-VLLVGN 106 (367)
T ss_pred EEEECCCCCC--CHHHHHHHHHCCCC-EEEEEE
T ss_conf 9997445776--51350898718984-899998
No 400
>KOG0074 consensus
Probab=96.04 E-value=0.026 Score=33.40 Aligned_cols=109 Identities=22% Similarity=0.305 Sum_probs=68.4
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEE--EEEECCC-EEEEEEECCCCHH---
Q ss_conf 882799999046898878999999876444200131268686986292063789--9982199-0899984787302---
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAH--VSYETDK-RFYSHIDCPGHAD--- 83 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~--~~~~~~~-~~i~iiD~PGH~~--- 83 (392)
+-.++|..+|--.|||||++..|.. |--|-+|-.-+| ...++++ .+.|+-|..|.+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~s-----------------ED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRp 77 (185)
T KOG0074 15 RREIRILLLGLDNAGKTTFLKQLKS-----------------EDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRP 77 (185)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHCC-----------------CCHHHCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCH
T ss_conf 4647899972277761308888713-----------------78333156688524787624707888885278665544
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCC-CCCCHHHHH-HHH---HHCCCCCEEEEECCCCCCCC
Q ss_conf 467798774002331452012344-332106778-888---63187602331002333561
Q gi|254780263|r 84 YVKNMITGATQADGAILVCAAEDG-PKPQTREHI-LLA---RQIGISSIVVYMNKVDAVDD 139 (392)
Q Consensus 84 f~~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~-~l~---~~lgi~~iIv~iNKmD~v~~ 139 (392)
|..|-. ...|.-|.|||+++- -+..+.+|+ .++ ++..+|-. ++-||-|++..
T Consensus 78 yWsNYy---envd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvl-IfankQdllta 134 (185)
T KOG0074 78 YWSNYY---ENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVL-IFANKQDLLTA 134 (185)
T ss_pred HHHHHH---HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEE-EHHHHHHHHHH
T ss_conf 566555---3055489998477367689988999998523122000010-01225678763
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.00 E-value=0.02 Score=34.05 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=60.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH-----HCCCC--CCCCHHHHHCCCEEEEE--EEEEECC----------------
Q ss_conf 99990468988789999998764442-----00131--26868698629206378--9998219----------------
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEK-----KEYGD--IDSAPEEKLRGITIATA--HVSYETD---------------- 69 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~-----~~~~~--~D~~~~E~~rGiTi~~~--~~~~~~~---------------- 69 (392)
..+-|--.||||||+.+|++...... .+.+. +|..--...-.-.+.+. =.++...
T Consensus 7 tiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~~~~~ 86 (317)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDR 86 (317)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 99830888899999999972778997899983761453329887356532688447736873052289999999986643
Q ss_pred ---CEEEEEEECCCCHHHHH---H-----HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf ---90899984787302467---7-----987740023314520123443321067788886318760233100233356
Q gi|254780263|r 70 ---KRFYSHIDCPGHADYVK---N-----MITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 70 ---~~~i~iiD~PGH~~f~~---~-----mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
..-+-+|-|-|=.|-.+ + .+...-..|..+-||||..+.+ |..++-........-..| ++||.|+++
T Consensus 87 ~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~-~l~~~~~~~~Qi~~AD~i-llnK~Dlv~ 164 (317)
T PRK11537 87 GNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADE-QMNQFTIAQSQVGYADRI-LLTKTDVAG 164 (317)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHH-HHHCCHHHHHHHHHCCEE-EEECCCCCC
T ss_conf 577754799962577883999999861256565320365599986655576-653034667666318689-974200236
Q ss_pred CHH
Q ss_conf 122
Q gi|254780263|r 139 DDE 141 (392)
Q Consensus 139 ~~~ 141 (392)
.++
T Consensus 165 ~~~ 167 (317)
T PRK11537 165 EAE 167 (317)
T ss_pred HHH
T ss_conf 599
No 402
>KOG0086 consensus
Probab=95.92 E-value=0.066 Score=30.89 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=65.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEE--ECCCEEEEEEECCCCHHH---HHH
Q ss_conf 799999046898878999999876444200131268686986292063789998--219908999847873024---677
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSY--ETDKRFYSHIDCPGHADY---VKN 87 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~iiD~PGH~~f---~~~ 87 (392)
+.+.++|....|||-|+.+.....-+. .. .+-|-++.+-.-. -.+.-++-|-||.|.+.| .++
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkD--------ds----sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRs 77 (214)
T KOG0086 10 FKFLVIGSAGTGKSCLLHQFIENKFKD--------DS----SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRS 77 (214)
T ss_pred HEEEEECCCCCCHHHHHHHHHHHHCCC--------CC----CCEEEEEECCCEEEECCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 026886468886327999999864136--------54----644202201102540571899998634257889999998
Q ss_pred HHHHHHCCCCEEEEECCCCC--CCCCHHHHHHHHHHCCCCCEE--EEECCCCCCCC
Q ss_conf 98774002331452012344--332106778888631876023--31002333561
Q gi|254780263|r 88 MITGATQADGAILVCAAEDG--PKPQTREHILLARQIGISSIV--VYMNKVDAVDD 139 (392)
Q Consensus 88 mi~g~~~~D~ailvVda~~G--~~~QT~eh~~l~~~lgi~~iI--v~iNKmD~v~~ 139 (392)
-.|| |-+|+||-|++.- -..-|. -+.=++.|.-++|+ .|=||-|+-+.
T Consensus 78 YYRG---AAGAlLVYD~TsrdsfnaLtn-WL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086 78 YYRG---AAGALLVYDITSRDSFNALTN-WLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHCC---CCCEEEEEECCCHHHHHHHHH-HHHHHHHHCCCCEEEEEECCHHHCCHH
T ss_conf 7536---564279985245556999999-888777647996799993771214412
No 403
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.87 E-value=0.061 Score=31.12 Aligned_cols=50 Identities=32% Similarity=0.522 Sum_probs=35.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY 84 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f 84 (392)
-|+++|.-++|||||+.+|...+. +||.++- .+...++.+. +|.||-..|
T Consensus 3 ii~ivG~snSGKTTLi~kli~~l~----------------~~G~~V~----~iKH~~H~f~-~D~~GkDS~ 52 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALS----------------ARGLRVA----VIKHDHHDFD-IDTPGKDSY 52 (159)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH----------------HCCCEEE----EEEECCCCCC-CCCCCCHHH
T ss_conf 999996799999999999999999----------------7798598----9973476777-778984417
No 404
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=95.59 E-value=0.011 Score=35.65 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=53.2
Q ss_pred ECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHHHHCCCCCCEE-ECH
Q ss_conf 00000135544543014874245348967999506874321254121001-2114432100136664112454322-021
Q gi|254780263|r 211 HIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGLLLRGVNRADV-PRG 288 (392)
Q Consensus 211 ~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l~Lkgi~~~di-~rG 288 (392)
.|-+....++.|.+++.-|.+|+|++||.+.... ...+|+++..+ .+.+++|.||+-|-+. |.+ ++ ..|
T Consensus 4 ~VlEs~~d~~~G~vatviV~~GtL~~Gd~~v~G~-----~~gkVr~l~d~~g~~v~~A~Ps~pV~I~--G~~--~~P~aG 74 (95)
T cd03702 4 VVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT-----TYGKVRAMFDENGKRVKEAGPSTPVEIL--GLK--GVPQAG 74 (95)
T ss_pred EEEEEEECCCCCCEEEEEEECCEEECCCEEEECC-----EEEEEEEEECCCCCCCCEECCCCCEEEE--CCC--CCCCCC
T ss_conf 9999997699884799999158020698988786-----3889999999999999888699859995--789--999999
Q ss_pred HEEEC
Q ss_conf 17732
Q gi|254780263|r 289 RVVCA 293 (392)
Q Consensus 289 dvl~~ 293 (392)
|.+..
T Consensus 75 d~~~~ 79 (95)
T cd03702 75 DKFLV 79 (95)
T ss_pred CEEEE
T ss_conf 98999
No 405
>KOG0087 consensus
Probab=95.58 E-value=0.033 Score=32.73 Aligned_cols=139 Identities=22% Similarity=0.232 Sum_probs=77.5
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEE--EEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982199089--99847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFY--SHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i--~iiD~PGH~~f~~~mi~ 90 (392)
..++.||.-.-|||-|+.+.++- ....|-.--|-++.+.....-+++.+ .|=||.|.+.|- -+..
T Consensus 15 FKiVliGDS~VGKsnLlsRftrn------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr-AitS 81 (222)
T KOG0087 15 FKIVLIGDSAVGKSNLLSRFTRN------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYR-AITS 81 (222)
T ss_pred EEEEEECCCCCCHHHHHHHHCCC------------CCCCCCCCCEEEEEEEEEEEECCCEEEEEEECCCCHHHHC-CCCC
T ss_conf 89999578765536778774335------------4675666624688775002356817887653261145650-0111
Q ss_pred H-HHCCCCEEEEECCCCCCCCCHHHHHH-HHHHC------CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEE
Q ss_conf 7-40023314520123443321067788-88631------8760233100233356122211012321001110145322
Q gi|254780263|r 91 G-ATQADGAILVCAAEDGPKPQTREHIL-LARQI------GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162 (392)
Q Consensus 91 g-~~~~D~ailvVda~~G~~~QT~eh~~-l~~~l------gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~ 162 (392)
+ -..|-+||||-|-+.- ||-||+. .++.| .|. ++++=||.|+-.-.. ...++-+.+-. .+.
T Consensus 82 aYYrgAvGAllVYDITr~---~Tfenv~rWL~ELRdhad~nIv-imLvGNK~DL~~lra---V~te~~k~~Ae----~~~ 150 (222)
T KOG0087 82 AYYRGAVGALLVYDITRR---QTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLRA---VPTEDGKAFAE----KEG 150 (222)
T ss_pred HHHCCCCEEEEEEECHHH---HHHHHHHHHHHHHHHCCCCCEE-EEEEECCHHHHHCCC---CCHHHHHHHHH----HCC
T ss_conf 221344036999950467---7888899999999855887717-999612204543346---44566566897----528
Q ss_pred EECCCCEEEEEEE
Q ss_conf 1023311467641
Q gi|254780263|r 163 TPIIRGSALCALQ 175 (392)
Q Consensus 163 ~pii~~sa~~g~~ 175 (392)
.+++.+||+.+.+
T Consensus 151 l~f~EtSAl~~tN 163 (222)
T KOG0087 151 LFFLETSALDATN 163 (222)
T ss_pred CEEEEECCCCCCC
T ss_conf 5478700344432
No 406
>KOG1490 consensus
Probab=95.49 E-value=0.0062 Score=37.26 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=61.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH---HHH---
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302---467---
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD---YVK--- 86 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~---f~~--- 86 (392)
-.+.+||-.+-|||+++..+++..-+. +-.. +++ ..+-+++ |.+.--++-.+||||--| =-+
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvev-qpYa--FTT-------ksL~vGH--~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490 169 RTLLVCGYPNVGKSSFNNKVTRADDEV-QPYA--FTT-------KLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred CEEEEECCCCCCCHHHCCCCCCCCCCC-CCCC--CCC-------CHHHHHH--HHHHEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 717985278877376435520155555-7766--551-------0121002--032402344038841247605432179
Q ss_pred HH--HHHHHCCC-CEEEEECCCC--C--CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
Q ss_conf 79--87740023-3145201234--4--3321067788886318760233100233356122
Q gi|254780263|r 87 NM--ITGATQAD-GAILVCAAED--G--PKPQTREHILLARQIGISSIVVYMNKVDAVDDDE 141 (392)
Q Consensus 87 ~m--i~g~~~~D-~ailvVda~~--G--~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~ 141 (392)
+| |++++-.- ++|...|-++ | +..|-+=.=.+=-++.-+..|+++||+|...++.
T Consensus 237 EmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490 237 EMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHHHHHHHHHHHHHHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 99999999875656411343221208889999999987678862884699952002568656
No 407
>KOG3887 consensus
Probab=95.45 E-value=0.0078 Score=36.64 Aligned_cols=119 Identities=23% Similarity=0.308 Sum_probs=76.8
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHH--
Q ss_conf 038827999990468988789999998764442001312686869862920637899982199089998478730246--
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYV-- 85 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~-- 85 (392)
+-|| +|...||--+|||+.....-++.... +++-.|-...+|.+- +...=-.+.+.|-||.-+|.
T Consensus 25 ~~kp--~ilLMG~rRsGKsSI~KVVFhkMsPn-------eTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~ 91 (347)
T KOG3887 25 GMKP--RILLMGLRRSGKSSIQKVVFHKMSPN-------ETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDP 91 (347)
T ss_pred CCCC--EEEEEEECCCCCCHHHHEEEECCCCC-------CEEEEECCCCCCHHH----HHHHHCCEEEEECCCCCCCCCC
T ss_conf 8886--58997301047320031123326987-------436764257533766----5332034377515886566787
Q ss_pred ---HHHHHHHHCCCCEEEEECCCCC-CCCCHHHHHHHHHHCCCCC---EEEEECCCCCCCCHH
Q ss_conf ---7798774002331452012344-3321067788886318760---233100233356122
Q gi|254780263|r 86 ---KNMITGATQADGAILVCAAEDG-PKPQTREHILLARQIGISS---IVVYMNKVDAVDDDE 141 (392)
Q Consensus 86 ---~~mi~g~~~~D~ailvVda~~G-~~~QT~eh~~l~~~lgi~~---iIv~iNKmD~v~~~~ 141 (392)
.+|+ ...+.+-+.||||-+- ..+-|+-|..++++++|++ +=|+|.|.|...++.
T Consensus 92 s~D~e~i--F~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887 92 SFDYEMI--FRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred CCCHHHH--HHCCCEEEEEEECHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEEECCCCCHHH
T ss_conf 6588998--741474999993658899999999987653055179844999997346775454
No 408
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.45 E-value=0.073 Score=30.61 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999904689887899999987644
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
++|+|-=|+|||||+.+|...+..
T Consensus 2 ~~i~G~k~SGKTtL~~~l~~~L~~ 25 (165)
T TIGR00176 2 LQIVGYKNSGKTTLIERLVKALKA 25 (165)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 378962588678999999999970
No 409
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.29 E-value=0.019 Score=34.30 Aligned_cols=60 Identities=27% Similarity=0.176 Sum_probs=46.7
Q ss_pred ECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCC-CCCCCCCCCCHHHHH
Q ss_conf 00000135544543014874245348967999506874321254121001-211443210013666
Q gi|254780263|r 211 HIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMF-RKKLDEAIAGDNVGL 275 (392)
Q Consensus 211 ~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~-~~~v~~a~aGd~v~l 275 (392)
.|-++...++.|.+++--|.+|+|++||.+.... ...+|+++..+ ++.+++|.|++-|.+
T Consensus 4 ~ViEs~~d~g~G~vatviV~~GtL~~Gd~iv~G~-----~~gkVr~~~d~~g~~v~~a~Ps~pV~i 64 (95)
T cd03701 4 TVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG-----TYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred EEEEEEECCCCCCEEEEEEECCCCCCCCEEEECC-----CEEEEEEEECCCCCCCCEECCCCCEEE
T ss_conf 9999997699883799999348655599999798-----787899999999999988869984999
No 410
>KOG1144 consensus
Probab=95.28 E-value=0.0098 Score=36.02 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=46.5
Q ss_pred CCCCCCCCCCEEE-EEEECCCCCCCEEEEEECCCCCC-CEEEECCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 0135544543014-87424534896799950687432-1254121001211443210013666411
Q gi|254780263|r 215 SCGIEGRGTVVTG-CIKRGRIKAGSDVEIIGMGGKKL-KVKCTDVEMFRKKLDEAIAGDNVGLLLR 278 (392)
Q Consensus 215 vf~i~g~G~Vv~G-rV~sG~l~~Gd~i~i~p~~~~~~-~~kv~si~~~~~~v~~a~aGd~v~l~Lk 278 (392)
+|+ -++.++.| .|..|+|+.|.++.+ |. ..+. ..+|.||+++|++|+.|.-||-|++.+-
T Consensus 945 ifN--~RdPiv~GV~V~~GilkiGTPiCv-~~-r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie 1006 (1064)
T KOG1144 945 IFN--KRDPIVLGVDVEEGILKIGTPICV-PK-REFIDLGRVASIENNHKPVDYAKKGQEVAIKIE 1006 (1064)
T ss_pred HCC--CCCCEEEEEEEECCEEECCCCEEE-EC-CCEEEEEEEEEECCCCCCCHHHHCCCEEEEEEE
T ss_conf 426--789859877700273533882377-42-331676566531126764503426766899971
No 411
>KOG2484 consensus
Probab=95.25 E-value=0.032 Score=32.86 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=52.7
Q ss_pred EEEEEEECCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH-HHHHHCCCCCEEEEECCCCCCCCH
Q ss_conf 0899984787302-467798774002331452012344332106778-888631876023310023335612
Q gi|254780263|r 71 RFYSHIDCPGHAD-YVKNMITGATQADGAILVCAAEDGPKPQTREHI-LLARQIGISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 71 ~~i~iiD~PGH~~-f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~-~l~~~lgi~~iIv~iNKmD~v~~~ 140 (392)
...+-+|-++|.. |-++...-+..+|+.|=|+||++....-..+.= .++.+-|-+++|.++||+|+|..+
T Consensus 122 ~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrE 193 (435)
T KOG2484 122 EYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPRE 193 (435)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEEHHCCCCHH
T ss_conf 766530565668999999999986510578863055887777756999997456872499995021048888
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.24 E-value=0.059 Score=31.20 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=71.4
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 9999-046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
|++. |--.-||||+.--|...+.+.++.-.-+|. |++.+.. ++-|-|||+|-- +..++..-+.
T Consensus 2 i~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~-----------D~g~an~---~~D~viiD~~aG--~~~~~~~~~~ 65 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGKRVLLLDA-----------DLGLANL---DYDYIIIDTGAG--ISDNVLDFFL 65 (139)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-----------CCCCCCC---CCCEEEEECCCC--CCHHHHHHHH
T ss_conf 89964999983999999999999978996999989-----------8999657---999999948999--8778999999
Q ss_pred CCCCEEEEECCCCCCCCCHHHHHH-HHHHCCCCCEEEEECCCCCCCC-HHHHHHCCCCCCEEE
Q ss_conf 023314520123443321067788-8863187602331002333561-222110123210011
Q gi|254780263|r 94 QADGAILVCAAEDGPKPQTREHIL-LARQIGISSIVVYMNKVDAVDD-DELLDISEYEIRDLL 154 (392)
Q Consensus 94 ~~D~ailvVda~~G~~~QT~eh~~-l~~~lgi~~iIv~iNKmD~v~~-~~~~~~i~~~i~~~l 154 (392)
.+|-.++|+-...---.-+...+. +.+..+..++-+.+|+...-.+ ++.|+....-.+.||
T Consensus 66 ~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~kfL 128 (139)
T cd02038 66 AADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFL 128 (139)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 589579995897067999999999999963999759999568999999999999999999980
No 413
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.24 E-value=0.056 Score=31.35 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=17.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999904689887899999987
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKY 35 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~ 35 (392)
..+-|--.||||||+.+|++.
T Consensus 3 ~iitGFLGaGKTTll~~lL~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 899848889999999999847
No 414
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.23 E-value=0.058 Score=31.22 Aligned_cols=61 Identities=25% Similarity=0.229 Sum_probs=37.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf 882799999046898878999999876444200131268686986292063789998219908999847873
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH 81 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH 81 (392)
.-.+||-++|--.-|||+++..|.+-... .++...-|-. ..-...=.-++.++|||||||-
T Consensus 29 ~~sltILvlGKtGVGKSsTINSifgE~~~------~~~aF~~~t~-----r~~~v~~tv~G~kl~iIDTPGL 89 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKA------ATSAFQSETL-----RVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHCCCCCC------CCCCCCCCCC-----CEEEEEEEECCEEEEEECCCCC
T ss_conf 64369999806876457767765085413------4477677886-----5089987533448998608987
No 415
>KOG0071 consensus
Probab=95.15 E-value=0.23 Score=27.48 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=71.6
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHH
Q ss_conf 27999990468988789999998764442001312686869862920637899982199089998478730246779877
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITG 91 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g 91 (392)
..+|..+|--.|||||++-.|--.. .+.. =-|.-.......+++-++|.-|..|... ++..-+-
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~---------~~~~------ipTvGFnvetVtykN~kfNvwdvGGqd~-iRplWrh 80 (180)
T KOG0071 17 EMRILMLGLDAAGKTTILYKLKLGQ---------SVTT------IPTVGFNVETVTYKNVKFNVWDVGGQDK-IRPLWRH 80 (180)
T ss_pred CCEEEEEECCCCCCEEHHHHHHCCC---------CCCC------CCCCCEEEEEEEEEEEEEEEEECCCCHH-HHHHHHH
T ss_conf 0217888126688400346876289---------7640------3554204777773006885212267122-0488986
Q ss_pred -HHCCCCEEEEECCCCC-CCCCHH-HHHHHH--HHC-CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE-EEEE
Q ss_conf -4002331452012344-332106-778888--631-87602331002333561222110123210011101453-2210
Q gi|254780263|r 92 -ATQADGAILVCAAEDG-PKPQTR-EHILLA--RQI-GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS-DDTP 164 (392)
Q Consensus 92 -~~~~D~ailvVda~~G-~~~QT~-eh~~l~--~~l-gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~-~~~p 164 (392)
-...-+.|+|+|+.+- -....| |--.++ +.+ .++ +.|.-||-|+.+.-. -.|++++|.-.... ..+-
T Consensus 81 Yy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~-----pqei~d~leLe~~r~~~W~ 154 (180)
T KOG0071 81 YYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMK-----PQEIQDKLELERIRDRNWY 154 (180)
T ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCE-EEEEECCCCCCCCCC-----HHHHHHHHCCCCCCCCCCE
T ss_conf 3567725999982432104999999999985787661205-898854665522169-----8998887542312699606
Q ss_pred CCCCEEEEE
Q ss_conf 233114676
Q gi|254780263|r 165 IIRGSALCA 173 (392)
Q Consensus 165 ii~~sa~~g 173 (392)
+.|+++.+|
T Consensus 155 vqp~~a~~g 163 (180)
T KOG0071 155 VQPSCALSG 163 (180)
T ss_pred EECCCCCCH
T ss_conf 603534440
No 416
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=95.13 E-value=0.21 Score=27.78 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=37.8
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCC--CCEEEEECCCCCCC
Q ss_conf 99089998478730246779877400233145201234433210677888863187--60233100233356
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGI--SSIVVYMNKVDAVD 138 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi--~~iIv~iNKmD~v~ 138 (392)
+.+-|-|||||.- +..-+..++..+|.+++++.+..--..-....+......+. ..+-+++|+.|.-.
T Consensus 113 ~~~D~viiD~pp~--l~~~~~~al~aad~vlipv~~~~~s~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 113 AARDWVLIDLPRG--PSPITDQALAAADLVLVVVNADAACYATLHQLALALLARSVPPDGIHYLINQFQPAR 182 (246)
T ss_pred CCCCEEEEECCCC--CCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 6798899948998--749999999988947998189989999999999999984277675178863026401
No 417
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.11 E-value=0.1 Score=29.66 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=57.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHC
Q ss_conf 99990468988789999998764442001312686869862920637899982199089998478730246779877400
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQ 94 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~~ 94 (392)
|+++|..-+||||+...|.+.+...+.... -++.-.+ ......-|. -.+++++.....+..
T Consensus 2 ivl~GlP~SGKSt~a~~L~~~l~~~~~~~i---------------~~~~d~~---~~~~~~~~~-~~Ek~~r~~~~~~v~ 62 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELSKKLSEKNIDNI---------------ILGTDLI---RESFPVWKE-KYEEFIRDSTLYLIK 62 (249)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCEE---------------EECCCCC---HHHHHHCCH-HHHHHHHHHHHHHHH
T ss_conf 789678999899999999999998299659---------------9655200---212000336-779998999999999
Q ss_pred ---CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf ---2331452012344332106778888631876023310
Q gi|254780263|r 95 ---ADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYM 131 (392)
Q Consensus 95 ---~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~i 131 (392)
..-.++++|+.-=+.++=+|-..+|+.++.++.+|.+
T Consensus 63 ~~l~~~~~vI~D~~nYiKg~RYEL~clAk~~~t~~c~I~~ 102 (249)
T TIGR03574 63 TALKNKYSVIVDDTNYYNSKRRDLINIAKEYNKNYIIIYL 102 (249)
T ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 9843376699727327889999999999984998699997
No 418
>KOG2423 consensus
Probab=95.03 E-value=0.0079 Score=36.62 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=29.7
Q ss_pred HCCCCEEEEECCCCCCCCCHHHHHHHH-HHCCCCCEEEEECCCCCCC
Q ss_conf 002331452012344332106778888-6318760233100233356
Q gi|254780263|r 93 TQADGAILVCAAEDGPKPQTREHILLA-RQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 93 ~~~D~ailvVda~~G~~~QT~eh~~l~-~~lgi~~iIv~iNKmD~v~ 138 (392)
-..|+.+-|+||++..-...+..-..+ ...--+|+|.++||.|+|.
T Consensus 212 DSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVP 258 (572)
T KOG2423 212 DSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 32203688521568766541789999863287521688851355001
No 419
>KOG0080 consensus
Probab=94.97 E-value=0.14 Score=28.81 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=77.5
Q ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEE--EEECCCEEEEEEECCCCHHH---H
Q ss_conf 827999990468988789999998764442001312686869862920637899--98219908999847873024---6
Q gi|254780263|r 11 ESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHV--SYETDKRFYSHIDCPGHADY---V 85 (392)
Q Consensus 11 ~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~iiD~PGH~~f---~ 85 (392)
.++.|-+||.-.-|||+|+-+.+. |..+.+..--|-+|.... ....++.++.|-||.|.+.| +
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~------------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT 77 (209)
T KOG0080 10 TTFKILLIGESGVGKSSLLLRFVS------------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT 77 (209)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH------------CCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCHHHHHCCC
T ss_conf 047999981687657899999876------------43676677344345788999875826789987434527661168
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHH-HHHC----CCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 779877400233145201234433210677888-8631----87602331002333561222110123210011101453
Q gi|254780263|r 86 KNMITGATQADGAILVCAAEDGPKPQTREHILL-ARQI----GISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYS 160 (392)
Q Consensus 86 ~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l-~~~l----gi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~ 160 (392)
+.-.|| |-++|||-|.+.--.=--.+++.. +.++ .+-.+. +=||+|.-+ +|.- ..+|=.+|-++..
T Consensus 78 pSyyRg---aqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikml-VgNKiDkes--~R~V-~reEG~kfAr~h~-- 148 (209)
T KOG0080 78 PSYYRG---AQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKML-VGNKIDKES--ERVV-DREEGLKFARKHR-- 148 (209)
T ss_pred HHHHCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHH-HCCCCCCHH--CCCC-CHHHHHHHHHHHC--
T ss_conf 767455---750699997122356775999999887644881376765-425445012--0213-4888789998608--
Q ss_pred EEEECCCCEEEE
Q ss_conf 221023311467
Q gi|254780263|r 161 DDTPIIRGSALC 172 (392)
Q Consensus 161 ~~~pii~~sa~~ 172 (392)
.-++.+||.+
T Consensus 149 --~LFiE~SAkt 158 (209)
T KOG0080 149 --CLFIECSAKT 158 (209)
T ss_pred --CEEEECCHHH
T ss_conf --2789825434
No 420
>PRK05480 uridine kinase; Provisional
Probab=94.88 E-value=0.034 Score=32.70 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 0388279999904689887899999987644
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
++||.+ |+|+|...|||||++..|...++.
T Consensus 3 ~k~P~i-IgIaG~SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 3 MKQPII-IGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred CCCCEE-EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 889889-999899977899999999998086
No 421
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.75 E-value=0.033 Score=32.74 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=25.8
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999904689887899999987644420013126
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDID 47 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D 47 (392)
-.++++|-+|+|||||+--|+..+...+...+.+|
T Consensus 74 ~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiD 108 (398)
T COG1341 74 GVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIID 108 (398)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 38999898676788999999988764474189996
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.74 E-value=0.057 Score=31.31 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=48.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
||+|.|-..+||||++.+|+.. +..+.|.|||=|++ +.| +.
T Consensus 160 nIii~GGTgSGKTTf~kal~~~------------------------------IP~~ER~iTIED~~--E~~-------~~ 200 (328)
T TIGR02788 160 NIIISGGTGSGKTTFLKALVKE------------------------------IPKDERLITIEDTR--ELF-------LP 200 (328)
T ss_pred EEEEEECCCCHHHHHHHHHHHC------------------------------CCCCCCEEEEEEEE--CCC-------CC
T ss_conf 1999906897189999999732------------------------------76225278885201--147-------88
Q ss_pred C-CCCEEEEECCC--CCCCCCHHHHHHHHHHCCCC--CEEE
Q ss_conf 0-23314520123--44332106778888631876--0233
Q gi|254780263|r 94 Q-ADGAILVCAAE--DGPKPQTREHILLARQIGIS--SIVV 129 (392)
Q Consensus 94 ~-~D~ailvVda~--~G~~~QT~eh~~l~~~lgi~--~iIv 129 (392)
+ .+.+=|+.+-. +|...-|-+-+.- ..|.++ +||+
T Consensus 201 hhpN~V~L~ysk~v~~g~~~vt~~~Ll~-scLRMrPDRI~L 240 (328)
T TIGR02788 201 HHPNKVHLFYSKGVGQGSAKVTPKDLLE-SCLRMRPDRILL 240 (328)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHH-HHHCCCCCHHHH
T ss_conf 8986456553464234435689899999-971177405767
No 423
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=94.73 E-value=0.067 Score=30.86 Aligned_cols=120 Identities=26% Similarity=0.264 Sum_probs=67.0
Q ss_pred EEEE-ECCCCCHHHHHHHHHHHHHHHHHCCCCCCC-----------CHHHHHCCCEEEEE----------EEEE-E----
Q ss_conf 9999-046898878999999876444200131268-----------68698629206378----------9998-2----
Q gi|254780263|r 15 LSTI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDS-----------APEEKLRGITIATA----------HVSY-E---- 67 (392)
Q Consensus 15 i~~i-Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~-----------~~~E~~rGiTi~~~----------~~~~-~---- 67 (392)
++|- -..+.||||+.--|--.+...+....-.|. -..|+..|.|--+. -+.. |
T Consensus 22 l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL~v 101 (207)
T TIGR01007 22 LLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENLDV 101 (207)
T ss_pred EEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCCEE
T ss_conf 99841105888624107889999856855888754658660367865888765633322145453334202654678727
Q ss_pred --------------------------CCCEEEEEEECCCCHHHHHHHHHHH---HCCCCEEEEECCCCCCCCCHHHHHHH
Q ss_conf --------------------------1990899984787302467798774---00233145201234433210677888
Q gi|254780263|r 68 --------------------------TDKRFYSHIDCPGHADYVKNMITGA---TQADGAILVCAAEDGPKPQTREHILL 118 (392)
Q Consensus 68 --------------------------~~~~~i~iiD~PGH~~f~~~mi~g~---~~~D~ailvVda~~G~~~QT~eh~~l 118 (392)
.+.|-|-+||||= +..++-++ +.+|..|||++|.+=-...-..-=.+
T Consensus 102 i~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPP----ig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~KAK~~ 177 (207)
T TIGR01007 102 ITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPP----IGTVIDAAIIARAVDASILVTDAGKIKKREVKKAKEQ 177 (207)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC----CCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 517887877547888899999999987168889995188----6667889999987297798872253264678999999
Q ss_pred HHHCCCCCEEEEECCCCCCC
Q ss_conf 86318760233100233356
Q gi|254780263|r 119 ARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 119 ~~~lgi~~iIv~iNKmD~v~ 138 (392)
+...|=+.+=|++||+|.-.
T Consensus 178 LEq~G~~~LGvvLNK~d~s~ 197 (207)
T TIGR01007 178 LEQAGSKFLGVVLNKVDISV 197 (207)
T ss_pred HHHHCCCEEEEEECCCCCCC
T ss_conf 98617841158888825765
No 424
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.72 E-value=0.036 Score=32.49 Aligned_cols=57 Identities=21% Similarity=0.415 Sum_probs=39.9
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
++.++++++|...-|||||+.+|.+... ..+- ..-|+|-......+ +..+.++||||
T Consensus 115 ~~~i~v~vvG~PNVGKSSlIN~L~~~k~------~~v~-----~~PG~Tk~~q~i~l---~~~i~L~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRA------CNVG-----ATPGVTKSMQEVHL---DKKVKLLDSPG 171 (172)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE------EEEC-----CCCCEEEEEEEEEE---CCCEEEEECCC
T ss_conf 6655999983477425789988734744------7765-----99954766799995---89989996919
No 425
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.71 E-value=0.13 Score=29.14 Aligned_cols=91 Identities=22% Similarity=0.199 Sum_probs=47.9
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--C----------CCCHHHHHCCCEEEEEEEEEECC--CEEEEEEEC
Q ss_conf 799999046898878999999876444200131--2----------68686986292063789998219--908999847
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--I----------DSAPEEKLRGITIATAHVSYETD--KRFYSHIDC 78 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~----------D~~~~E~~rGiTi~~~~~~~~~~--~~~i~iiD~ 78 (392)
++++++|=...|||||..+||+... ....+.. . +-.+.+|-. ...+.....+... .-.+.|+|.
T Consensus 3 lk~GIVGLPNvGKSTlFnaLT~~~~-~~aNyPF~TIePn~Gi~~v~v~~pd~~l~-~~~~~~~~~~~~~~~~vpie~vDI 80 (396)
T PRK09602 3 IQIGLVGKPNVGKSTFFSAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELG-VKCNPRNGKCIDGVRFIPVELIDV 80 (396)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEECCCCCCHHHHH-HHCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 3488888999988999999977998-64589988877843625233688436665-430654221357733655899875
Q ss_pred CCCHH-------HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 87302-------4677987740023314520123
Q gi|254780263|r 79 PGHAD-------YVKNMITGATQADGAILVCAAE 105 (392)
Q Consensus 79 PGH~~-------f~~~mi~g~~~~D~ailvVda~ 105 (392)
||-.. ....-+.-++.+|+-+-||+|.
T Consensus 81 AGLVkGAS~GeGLGNkFLs~IRevDaI~hVVr~~ 114 (396)
T PRK09602 81 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 114 (396)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEEECC
T ss_conf 5567650116876089999887268799997535
No 426
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.68 E-value=0.034 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=10.7
Q ss_pred CCHHHHHHCCCCCCCC
Q ss_conf 3203443102522221
Q gi|254780263|r 187 HALMKAVDTHIPTPQR 202 (392)
Q Consensus 187 ~~Ll~~i~~~~~~p~~ 202 (392)
-||+.++..++|.-+|
T Consensus 174 TTll~aL~~~ip~~eR 189 (332)
T PRK13900 174 TTFTNAALREIPAIER 189 (332)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999999835895353
No 427
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=94.65 E-value=0.26 Score=27.15 Aligned_cols=116 Identities=22% Similarity=0.269 Sum_probs=63.8
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC---H--HHHHCCCE----EEEEEEEEECCCEEEEEEECC-CCHHHHHHH
Q ss_conf 0468988789999998764442001312686---8--69862920----637899982199089998478-730246779
Q gi|254780263|r 19 GHVDHGKTTLTAAITKYYSEEKKEYGDIDSA---P--EEKLRGIT----IATAHVSYETDKRFYSHIDCP-GHADYVKNM 88 (392)
Q Consensus 19 Ghvd~GKSTL~~~L~~~~~~~~~~~~~~D~~---~--~E~~rGiT----i~~~~~~~~~~~~~i~iiD~P-GH~~f~~~m 88 (392)
|--..||||+.-.|...+.+.+..-+-+|-. + ..--||-- +.--.....|++.-|-|||+| |--|=.-++
T Consensus 7 ~kggvgkst~~~~la~~l~~~g~~v~~~d~di~gpsip~~~rGp~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~ 86 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTL 86 (169)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 99988199999999999998799789997137999755012047389999999985254667889996899987077879
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 87740023314520123443321067788886318760233100233
Q gi|254780263|r 89 ITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVD 135 (392)
Q Consensus 89 i~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD 135 (392)
... ..+|.+++|.-...--..-.++...+++.+++|.+=++.|---
T Consensus 87 ~~~-~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs~ 132 (169)
T cd02037 87 AQS-LPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred HHH-CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 875-0567479994695889999999999999759970799987966
No 428
>KOG0447 consensus
Probab=94.59 E-value=0.3 Score=26.83 Aligned_cols=127 Identities=20% Similarity=0.299 Sum_probs=66.3
Q ss_pred CEE-EEEEEECCCCCHHHHHHHHHHH--HHH-----------------------HHH-CCCCCCCCHH--------H---
Q ss_conf 827-9999904689887899999987--644-----------------------420-0131268686--------9---
Q gi|254780263|r 11 ESL-GLSTIGHVDHGKTTLTAAITKY--YSE-----------------------EKK-EYGDIDSAPE--------E--- 52 (392)
Q Consensus 11 ~~~-ni~~iGhvd~GKSTL~~~L~~~--~~~-----------------------~~~-~~~~~D~~~~--------E--- 52 (392)
.|+ +++++|.--+|||+.+..+.+. +.. ..+ .....|-++| |
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 46862799756666622899999874307688853100377478814686034542465422465415579999888889
Q ss_pred -----HHCCCEEEEEEEEEECCC---EEEEEEECCCCHH--------HHHHHHHHHH-----CCCCEEEEEC-CC-CCCC
Q ss_conf -----862920637899982199---0899984787302--------4677987740-----0233145201-23-4433
Q gi|254780263|r 53 -----KLRGITIATAHVSYETDK---RFYSHIDCPGHAD--------YVKNMITGAT-----QADGAILVCA-AE-DGPK 109 (392)
Q Consensus 53 -----~~rGiTi~~~~~~~~~~~---~~i~iiD~PGH~~--------f~~~mi~g~~-----~~D~ailvVd-a~-~G~~ 109 (392)
-.-|.|+.-....+.-++ -+.-++|.||--. =+++.|..++ .+++.||||- .+ +-..
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 98850357851451216897218996236886377325440023464316779999999745998389995168730555
Q ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 21067788886318760233100233356
Q gi|254780263|r 110 PQTREHILLARQIGISSIVVYMNKVDAVD 138 (392)
Q Consensus 110 ~QT~eh~~l~~~lgi~~iIv~iNKmD~v~ 138 (392)
.---....-+.-+|-+ -|++++|.|++.
T Consensus 466 SnVTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447 466 SIVTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred HHHHHHHHHCCCCCCE-EEEEEEECCHHH
T ss_conf 1388898713877873-699985111564
No 429
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=94.58 E-value=0.033 Score=32.79 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 79999904689887899999987644
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
=||.|+|=..+|||||+.+|+.....
T Consensus 140 ~NIlv~GGTGSGKTTLaNAlla~I~~ 165 (315)
T TIGR02782 140 KNILVVGGTGSGKTTLANALLAEIAK 165 (315)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98899814588579999999998852
No 430
>PRK13948 shikimate kinase; Provisional
Probab=94.44 E-value=0.054 Score=31.44 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE
Q ss_conf 103882799999046898878999999876444200131268686986292063
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~ 60 (392)
+.+++.-||+.+|.-.+||||+-..|.+.++-. .-++|.. -|+.-|++|.
T Consensus 5 ~~p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~---fiD~D~~-Ie~~~g~sI~ 54 (182)
T PRK13948 5 EVPRPATFVALAGFMGTGKSRIGWELSRALALH---FVDTDKL-ITRVVGKSIP 54 (182)
T ss_pred CCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC---EEECHHH-HHHHHCCCHH
T ss_conf 579999818988999998899999999996959---8888499-9998893999
No 431
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.41 E-value=0.052 Score=31.51 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCC
Q ss_conf 88279999904689887899999987644420013126868698629206378999821990899984787
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPG 80 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PG 80 (392)
+..++++++|-...|||||+.+|.+... ..+-..+ |.|-.......+ ..+-++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~------~~~s~~P-----G~Tk~~q~i~~~---~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV------AKTSNRP-----GTTKGIQWIKLD---DGIYLLDTPG 186 (322)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC------CCCCCCC-----CEECCCEEEECC---CCEEEEECCC
T ss_conf 5560899987897648999999862055------5237999-----620451689727---8628973888
No 432
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=94.36 E-value=0.22 Score=27.66 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=35.0
Q ss_pred EEEEECCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECC
Q ss_conf 99990468988789999998-764442001312686869862920637899982199089998478
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITK-YYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCP 79 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~-~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~P 79 (392)
|+|.|-..|||||+.++++- -+++..+..........=..+|-+-......|+..+..|.++=.|
T Consensus 33 FlI~G~TGAGKSTIlDAItfALYG~~~r~~~~~~~~~~~~~~~~~~~~Vel~F~~~g~~Yri~r~~ 98 (1047)
T PRK10246 33 FAITGPTGAGKTTLLDAICLALYHETPRLNNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQ 98 (1047)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEEEECCEEEEEEEEH
T ss_conf 888899999889999999999589988888877560556228999668999999999899998615
No 433
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=94.30 E-value=0.1 Score=29.72 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=48.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCH--------------HHHHCCCEEEEE-EEE------------------E
Q ss_conf 4689887899999987644420013126868--------------698629206378-999------------------8
Q gi|254780263|r 20 HVDHGKTTLTAAITKYYSEEKKEYGDIDSAP--------------EEKLRGITIATA-HVS------------------Y 66 (392)
Q Consensus 20 hvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~--------------~E~~rGiTi~~~-~~~------------------~ 66 (392)
--..||||+.=+|-..+...++.-.-+|--+ ....+|+....- +.. +
T Consensus 9 KGGvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr~~~~~~~~~~l~~P~~~~l~~~~~~~~~~~~~~~~~L 88 (261)
T pfam09140 9 KGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENRAATAERTGLDLPVPKHLCLPDDVSEVFDGESADDARL 88 (261)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 89872999999999999988997899979999985123443035565513865346653445506777613455789999
Q ss_pred ------ECCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf ------219908999847873024677987740023314520123
Q gi|254780263|r 67 ------ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAE 105 (392)
Q Consensus 67 ------~~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~ 105 (392)
-.++|-|.+|||||.-.++ ++.+++.||..|+-+.++
T Consensus 89 ~~al~~l~~~yDfIlIDcPPsl~~L--t~nAl~aAD~vIiPlq~s 131 (261)
T pfam09140 89 EEAVADLEQDADFIVIDTPGSDSPL--SRLAHSRADTLVTPLNDS 131 (261)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHHHCEEEECCCHH
T ss_conf 9999998757999999699857399--999999839876324401
No 434
>pfam09547 Spore_IV_A Stage IV sporulation protein A (spore_IV_A). SpoIVA is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=94.26 E-value=0.059 Score=31.22 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=66.0
Q ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHH-----HHHHHCCCCCCCCHHHHHCCCEEEEE---E-----EEEE---CCC
Q ss_conf 103882799999046898878999999876-----44420013126868698629206378---9-----9982---199
Q gi|254780263|r 7 VRNKESLGLSTIGHVDHGKTTLTAAITKYY-----SEEKKEYGDIDSAPEEKLRGITIATA---H-----VSYE---TDK 70 (392)
Q Consensus 7 ~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~-----~~~~~~~~~~D~~~~E~~rGiTi~~~---~-----~~~~---~~~ 70 (392)
.|..--+-++++|-|-.||||.+.+....+ ........-.|.+++- ..|.||-.. | +... .-.
T Consensus 12 ~RT~GdIYiGVVGPVRTGKSTFIKrFMe~~VlPnI~~~~~keRa~DELPQS-~aGktIMTTEPKFVP~eAv~I~l~~~~~ 90 (492)
T pfam09547 12 ERTNGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIENEYKKERAKDELPQS-GSGKTIMTTEPKFVPNEAVEIKLDDGLK 90 (492)
T ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCC-CCCCCEECCCCCCCCCCCEEEEECCCCE
T ss_conf 860896699962672067366999999985468889877877643037767-8998133368876653104888369844
Q ss_pred EEEEEEECCCC--------H-----------------HHHHHHHHHHHC---CCCEEEEECCCCCCC-C--------CHH
Q ss_conf 08999847873--------0-----------------246779877400---233145201234433-2--------106
Q gi|254780263|r 71 RFYSHIDCPGH--------A-----------------DYVKNMITGATQ---ADGAILVCAAEDGPK-P--------QTR 113 (392)
Q Consensus 71 ~~i~iiD~PGH--------~-----------------~f~~~mi~g~~~---~D~ailvVda~~G~~-~--------QT~ 113 (392)
.++.+|||-|. . .|-.-..-|..- -+.-|=+|=-++|-. . --.
T Consensus 91 ~kVRLiDCVGY~V~gA~Gy~e~~~~RmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dIpRe~Y~eAEe 170 (492)
T pfam09547 91 FKVRLVDCVGYIVEGALGYEEEDGPRMVKTPWFDEEIPFEEAAEIGTRKVITEHSTIGLVVTTDGSITDIPRENYVEAEE 170 (492)
T ss_pred EEEEEEEECCEEECCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEECCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 89999965256755755554689751304898788878688876465413315771449995688756766444235799
Q ss_pred HHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 77888863187602331002333
Q gi|254780263|r 114 EHILLARQIGISSIVVYMNKVDA 136 (392)
Q Consensus 114 eh~~l~~~lgi~~iIv~iNKmD~ 136 (392)
+...-++.+|=| |||.+|-.+-
T Consensus 171 rvI~ELk~i~KP-FiillNs~~P 192 (492)
T pfam09547 171 RVIEELKEIGKP-FIILLNSQRP 192 (492)
T ss_pred HHHHHHHHHCCC-EEEEEECCCC
T ss_conf 999999970998-8999838998
No 435
>KOG1533 consensus
Probab=94.24 E-value=0.093 Score=29.97 Aligned_cols=125 Identities=18% Similarity=0.318 Sum_probs=66.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--CC----CCHH---------------HHHCCCEEEEEE--------E
Q ss_conf 99999046898878999999876444200131--26----8686---------------986292063789--------9
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--ID----SAPE---------------EKLRGITIATAH--------V 64 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~D----~~~~---------------E~~rGiTi~~~~--------~ 64 (392)
--++||-..+||||-+...++.++..++.... +| .++- -.+.|.-=+-+. +
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 06887699998531132099999974896279956876567888776519997139999998587996127999999985
Q ss_pred E-------EECCCEEEEEEECCCCHH------HHHHHHHHHHCCCCEEEEE---CCCCCCCCCHH-HHHH--H--HHHCC
Q ss_conf 9-------821990899984787302------4677987740023314520---12344332106-7788--8--86318
Q gi|254780263|r 65 S-------YETDKRFYSHIDCPGHAD------YVKNMITGATQADGAILVC---AAEDGPKPQTR-EHIL--L--ARQIG 123 (392)
Q Consensus 65 ~-------~~~~~~~i~iiD~PGH~~------f~~~mi~g~~~~D~ailvV---da~~G~~~QT~-eh~~--l--~~~lg 123 (392)
. .+....+|-+.|+||... =+.+.++-+..-|+-+.+| |+-=.-.|-.- -.+. + ...+.
T Consensus 84 ~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~me 163 (290)
T KOG1533 84 NIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHME 163 (290)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 44999997452347489995798279874256099999999976953799973302143784899999999999998623
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 7602331002333561
Q gi|254780263|r 124 ISSIVVYMNKVDAVDD 139 (392)
Q Consensus 124 i~~iIv~iNKmD~v~~ 139 (392)
.||+= ++.|+|+...
T Consensus 164 lphVN-vlSK~Dl~~~ 178 (290)
T KOG1533 164 LPHVN-VLSKADLLKK 178 (290)
T ss_pred CCCHH-HHHHHHHHHH
T ss_conf 65001-4257677876
No 436
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.12 E-value=0.36 Score=26.33 Aligned_cols=50 Identities=32% Similarity=0.464 Sum_probs=32.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADY 84 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f 84 (392)
-++++|--|+|||||+.+|...+ ++||..+.+ ....++. -=+|+||-..|
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L----------------~~~G~rVa~----iKH~hh~-~~~D~~GkDs~ 53 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKL----------------KARGYRVAT----VKHAHHD-FDLDKPGKDTY 53 (161)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH----------------HHCCCEEEE----EEECCCC-CCCCCCCCCCC
T ss_conf 89999627997342899999999----------------757937999----9865877-77788987661
No 437
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.09 E-value=0.057 Score=31.31 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=10.7
Q ss_pred CCHHHHHHCCCCCCCC
Q ss_conf 3203443102522221
Q gi|254780263|r 187 HALMKAVDTHIPTPQR 202 (392)
Q Consensus 187 ~~Ll~~i~~~~~~p~~ 202 (392)
-||+.+|..++|.-+|
T Consensus 176 TTllnALl~~IP~~eR 191 (343)
T PRK13851 176 TTMSKTLISAIPPQER 191 (343)
T ss_pred HHHHHHHHHCCCCCCC
T ss_conf 9999999962896552
No 438
>PRK08118 topology modulation protein; Reviewed
Probab=94.07 E-value=0.057 Score=31.28 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
+|.|+|...+|||||..+|...++
T Consensus 3 rI~IiG~~GsGKSTlAr~L~~~~~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 799988999879999999999889
No 439
>CHL00175 minD septum-site determining protein; Validated
Probab=94.03 E-value=0.086 Score=30.17 Aligned_cols=66 Identities=26% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 19908999847873024677987740023314520123443321067788886318760233100233
Q gi|254780263|r 68 TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVD 135 (392)
Q Consensus 68 ~~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD 135 (392)
+++|-|-|||||..- ...++.++..+|.+++|.-...--..-++..+.+++..+++++=+++|++.
T Consensus 122 ~~~yDyiiID~ppgl--~~~~~~al~aad~viIvttpe~~al~da~~~i~~~~~~~~~~~~lvvN~~~ 187 (279)
T CHL00175 122 ERNYDYILIDCPAGI--DVGFINAIAPAKEAIVVTTPEITAIRDADRVAGLLEANGIYNIKLLVNRVR 187 (279)
T ss_pred HCCCCEEEECCCCCC--CHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 279999998189988--899999999789069978997899999999999999759986213533564
No 440
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=93.95 E-value=0.22 Score=27.62 Aligned_cols=80 Identities=20% Similarity=0.263 Sum_probs=44.7
Q ss_pred EEEEECCCCCHHHHHHHHHHH-HHHHHHCCC--CCCCCHHHHHCCCEEEEEEE--EEECCCEEEEEEECCC--CHHHHHH
Q ss_conf 999904689887899999987-644420013--12686869862920637899--9821990899984787--3024677
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKY-YSEEKKEYG--DIDSAPEEKLRGITIATAHV--SYETDKRFYSHIDCPG--HADYVKN 87 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~--~~D~~~~E~~rGiTi~~~~~--~~~~~~~~i~iiD~PG--H~~f~~~ 87 (392)
++|.|.-.+||||+.++++-. +++-.+... .++.. +..|-. .+.. .|+..+++|-+.-.|| +.+|.+.
T Consensus 31 flI~G~nGsGKSTIlDAI~~aLYGk~~r~~~~~~~~~~---~~~ge~--~aeV~feF~~g~~~YrV~R~~gld~~qF~r~ 105 (213)
T cd03279 31 FLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSV---FAPGED--TAEVSFTFQLGGKKYRVERSRGLDYDQFTRI 105 (213)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCC--EEEEEEEEEECCEEEEEEECCCCCHHHHHHE
T ss_conf 99988999978899999999983888233664100024---456784--4999999997786889986279988893320
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 98774002331452
Q gi|254780263|r 88 MITGATQADGAILV 101 (392)
Q Consensus 88 mi~g~~~~D~ailv 101 (392)
|+ +.|-+++-++
T Consensus 106 vl--LpQG~F~~FL 117 (213)
T cd03279 106 VL--LPQGEFDRFL 117 (213)
T ss_pred EE--ECCHHHHHHH
T ss_conf 17--5351079998
No 441
>PRK07261 topology modulation protein; Provisional
Probab=93.87 E-value=0.065 Score=30.94 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
+|.|+|...||||||..+|...++
T Consensus 2 rI~IiG~sGsGKSTlAr~L~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARFLGQHYN 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899988999868999999999879
No 442
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.86 E-value=0.04 Score=32.22 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.3
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 8827999990468988789999998764
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
+...||.|+|..++|||||+.+|.....
T Consensus 23 ~~~~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 8599899989999989999999996133
No 443
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.84 E-value=0.092 Score=30.00 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=8.5
Q ss_pred CCHHHHHHCCCCCCCC
Q ss_conf 3203443102522221
Q gi|254780263|r 187 HALMKAVDTHIPTPQR 202 (392)
Q Consensus 187 ~~Ll~~i~~~~~~p~~ 202 (392)
-||+.++..++|+.+|
T Consensus 187 TTlLNal~~~i~~~eR 202 (355)
T COG4962 187 TTLLNALSGFIDSDER 202 (355)
T ss_pred HHHHHHHHHCCCCCCE
T ss_conf 9999999715797650
No 444
>KOG1424 consensus
Probab=93.55 E-value=0.08 Score=30.38 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEE
Q ss_conf 246779877400233145201234433210677888863-1876023310023335612221101232100111014532
Q gi|254780263|r 83 DYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQ-IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSD 161 (392)
Q Consensus 83 ~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~-lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~ 161 (392)
++.+..=|-+--.|..+.+|||+....=-.-..-..+.- ..-++.++.|||.|+..++++.... +++.+.
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa-----~YF~~~---- 233 (562)
T KOG1424 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWA-----EYFRQN---- 233 (562)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHHHCCCHHHHHHHH-----HHHHHC----
T ss_conf 99999999874324489996157863157864999974205431248997245318999999999-----998754----
Q ss_pred EEECCCCEEEE
Q ss_conf 21023311467
Q gi|254780263|r 162 DTPIIRGSALC 172 (392)
Q Consensus 162 ~~pii~~sa~~ 172 (392)
+++++.+||+-
T Consensus 234 ni~~vf~SA~~ 244 (562)
T KOG1424 234 NIPVVFFSALA 244 (562)
T ss_pred CCEEEEEECCC
T ss_conf 97399974120
No 445
>KOG1424 consensus
Probab=93.54 E-value=0.12 Score=29.35 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCEEEEEEEC--------CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
Q ss_conf 9908999847--------87302467798774002331452012344332106778
Q gi|254780263|r 69 DKRFYSHIDC--------PGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116 (392)
Q Consensus 69 ~~~~i~iiD~--------PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~ 116 (392)
.+-.+-|+|+ |--++|++++.- .-..+|+|.-.+=..+-.+.++
T Consensus 175 SDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~~qr~aW 226 (562)
T KOG1424 175 SDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPPEQRVAW 226 (562)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHCCCC----CCCEEEEEEHHHCCCHHHHHHH
T ss_conf 244899961578631578649999742054----3124899724531899999999
No 446
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=93.44 E-value=0.19 Score=27.99 Aligned_cols=80 Identities=23% Similarity=0.255 Sum_probs=43.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEE--EEEEE------------ECC---CEEEEEEE
Q ss_conf 99990468988789999998764442001312686869862920637--89998------------219---90899984
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIAT--AHVSY------------ETD---KRFYSHID 77 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~------------~~~---~~~i~iiD 77 (392)
++++|=...|||||-.+||+... .+..+. --||+. |.... ..+ .-.+.|+|
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nyp-----------f~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvD 68 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYP-----------FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCC-----------CCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 95647899988999999977998-745899-----------777268058996775658899873177651235789985
Q ss_pred CCCCHH------HHHH-HHHHHHCCCCEEEEECCCC
Q ss_conf 787302------4677-9877400233145201234
Q gi|254780263|r 78 CPGHAD------YVKN-MITGATQADGAILVCAAED 106 (392)
Q Consensus 78 ~PGH~~------f~~~-mi~g~~~~D~ailvVda~~ 106 (392)
.||-.. -++| -+.-++.+|+-+-||.|-+
T Consensus 69 IaGLvkgAs~GeGLGN~FL~~Ir~vDai~hVVR~F~ 104 (274)
T cd01900 69 IAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEHHHCC
T ss_conf 465567752367650899999873463465321115
No 447
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=93.33 E-value=0.089 Score=30.08 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 73024677987740023314520123
Q gi|254780263|r 80 GHADYVKNMITGATQADGAILVCAAE 105 (392)
Q Consensus 80 GH~~f~~~mi~g~~~~D~ailvVda~ 105 (392)
||...+ ..+.|..|-..|||+++
T Consensus 16 GH~~li---~~a~s~vDel~ivvg~D 38 (346)
T TIGR01526 16 GHIYLI---YKAASKVDELHIVVGSD 38 (346)
T ss_pred CHHHHH---HHHHHHCCCEEEEECCC
T ss_conf 459999---99854268148997277
No 448
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=93.30 E-value=0.2 Score=27.97 Aligned_cols=88 Identities=23% Similarity=0.192 Sum_probs=46.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--C----------CCCHHHHHCCCEEEEEEEEEECCCE---EEEEEECC
Q ss_conf 9999046898878999999876444200131--2----------6868698629206378999821990---89998478
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--I----------DSAPEEKLRGITIATAHVSYETDKR---FYSHIDCP 79 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--~----------D~~~~E~~rGiTi~~~~~~~~~~~~---~i~iiD~P 79 (392)
|+++|-...|||||-.+||.... +...+.. . ...+.+|-.-. -+.....+. +++ .+.|+|.+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~~-~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~-~~~~~~~~~-~~~r~vPve~vDIA 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVS-CNPRYGKCI-DGKRYVPVELIDVA 77 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCCCCCCCC-CCCEECCEEEEECH
T ss_conf 93448898988999999977998-5127996676774162005568841666433-043312014-77400332675210
Q ss_pred CCHH-------HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7302-------4677987740023314520123
Q gi|254780263|r 80 GHAD-------YVKNMITGATQADGAILVCAAE 105 (392)
Q Consensus 80 GH~~-------f~~~mi~g~~~~D~ailvVda~ 105 (392)
|-.. ....-+.-++++|+-+-||||.
T Consensus 78 GLV~GAskG~GLGNkFL~~iRe~DaiihVVd~s 110 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCEEEEEEECC
T ss_conf 010566457766599999998478899985047
No 449
>PRK13695 putative NTPase; Provisional
Probab=93.17 E-value=0.46 Score=25.65 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.4
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 2799999046898878999999876444
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEE 39 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~ 39 (392)
.++|.+-|-...|||||+..+...+...
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~~ 30 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLARE 30 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 4299987899988999999999998636
No 450
>PRK07667 uridine kinase; Provisional
Probab=93.13 E-value=0.16 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 03882799999046898878999999876444
Q gi|254780263|r 8 RNKESLGLSTIGHVDHGKTTLTAAITKYYSEE 39 (392)
Q Consensus 8 ~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~ 39 (392)
++...+-|||.|.-.||||||+..|...+...
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~ 41 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQE 41 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 75986999977989788999999999998665
No 451
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA; InterPro: IPR014136 This entry represents the Ti-type conjugative transfer relaxase TraA. TraA contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, IPR005053 from INTERPRO) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, IPR014129 from INTERPRO). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer ..
Probab=93.01 E-value=0.08 Score=30.37 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=47.3
Q ss_pred EEEEECCCCCHHHHHHHHHHH-------------HHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEEC-------CCEEE
Q ss_conf 999904689887899999987-------------644420013126868698629206-378999821-------99089
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKY-------------YSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYET-------DKRFY 73 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~-------------~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~-------~~~~i 73 (392)
=+|||--.+|||||+.++=.. .++.+. ..|.+.||+- +++-..|.| ..+.+
T Consensus 433 avVvG~AGtGKSt~L~aAR~AWe~~Gy~V~GAALsGKAAe--------gLe~~sGI~SRTLASle~aW~~G~d~L~~~dv 504 (888)
T TIGR02768 433 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAE--------GLEAESGIESRTLASLEYAWANGRDLLEDKDV 504 (888)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHH--------HHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCE
T ss_conf 8997489987667899999999873977871545558988--------73002687504788799998738752247766
Q ss_pred EEEECCCCHHHHHHHHHH---HHCCCCEEEEE
Q ss_conf 998478730246779877---40023314520
Q gi|254780263|r 74 SHIDCPGHADYVKNMITG---ATQADGAILVC 102 (392)
Q Consensus 74 ~iiD~PGH~~f~~~mi~g---~~~~D~ailvV 102 (392)
-+||=.|-.+| +.|-+- |..|-+=|++|
T Consensus 505 LviDEAGMV~S-~Qm~r~l~~A~~AGaKvVLv 535 (888)
T TIGR02768 505 LVIDEAGMVGS-RQMARVLKEAEEAGAKVVLV 535 (888)
T ss_pred EEEECCCCHHH-HHHHHHHHHHHHCCCCEEEE
T ss_conf 89851544146-77889999998727605984
No 452
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=93.00 E-value=0.35 Score=26.42 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=7.3
Q ss_pred CHHHHHHCCCCCC
Q ss_conf 2034431025222
Q gi|254780263|r 188 ALMKAVDTHIPTP 200 (392)
Q Consensus 188 ~Ll~~i~~~~~~p 200 (392)
|++.++..++|.+
T Consensus 154 T~l~all~~i~~~ 166 (283)
T pfam00437 154 TLLYALLNEINTD 166 (283)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999840877
No 453
>KOG0072 consensus
Probab=92.99 E-value=0.032 Score=32.80 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=72.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHH---HHHHHH
Q ss_conf 79999904689887899999987644420013126868698629206378999821990899984787302---467798
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHAD---YVKNMI 89 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~---f~~~mi 89 (392)
.++-++|-..+||+|..=+|-- +..+++ -=||.-.....++++-++++-|.-|... |.+-
T Consensus 19 ~rililgldGaGkttIlyrlqv---------gevvtt------kPtigfnve~v~yKNLk~~vwdLggqtSirPyWRc-- 81 (182)
T KOG0072 19 MRILILGLDGAGKTTILYRLQV---------GEVVTT------KPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRC-- 81 (182)
T ss_pred EEEEEEECCCCCEEEEEEECCC---------CCCCCC------CCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHH--
T ss_conf 1789850367770699987125---------864345------89988680215536655124671586433277888--
Q ss_pred HHHHCCCCEEEEECCCCCCC-C-CHHHHHHHH---HHCCCCCEEEEECCCCCCCCHHHHHHCCC-CCCEEEEEEEEEEEE
Q ss_conf 77400233145201234433-2-106778888---63187602331002333561222110123-210011101453221
Q gi|254780263|r 90 TGATQADGAILVCAAEDGPK-P-QTREHILLA---RQIGISSIVVYMNKVDAVDDDELLDISEY-EIRDLLKEHKYSDDT 163 (392)
Q Consensus 90 ~g~~~~D~ailvVda~~G~~-~-QT~eh~~l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~-~i~~~l~~~~~~~~~ 163 (392)
=-+..|..|.|||+.+--. . --.|...++ ++.+ -.+.|+.||||.....-+.|.... .+.+ |+. ..+
T Consensus 82 -Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~-a~llv~anKqD~~~~~t~~E~~~~L~l~~-Lk~----r~~ 154 (182)
T KOG0072 82 -YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH-AKLLVFANKQDYSGALTRSEVLKMLGLQK-LKD----RIW 154 (182)
T ss_pred -HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCC-CEEEEEECCCCCHHHHHHHHHHHHHCHHH-HHH----HEE
T ss_conf -76066628999716543443146899999855486548-46999860455213556999999848288-750----226
Q ss_pred ECCCCEEEEE
Q ss_conf 0233114676
Q gi|254780263|r 164 PIIRGSALCA 173 (392)
Q Consensus 164 pii~~sa~~g 173 (392)
.|+..||.+|
T Consensus 155 ~Iv~tSA~kg 164 (182)
T KOG0072 155 QIVKTSAVKG 164 (182)
T ss_pred EEEEECCCCC
T ss_conf 8876011446
No 454
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=92.90 E-value=0.13 Score=29.05 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=22.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEE 39 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~ 39 (392)
.+.++|.-|+|||||+..|...+.+.
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~ 27 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRR 27 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 79999489998999999999999987
No 455
>TIGR01184 ntrCD nitrate ABC transporter, ATP-binding proteins C and D; InterPro: IPR005890 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. ; GO: 0015112 nitrate transmembrane transporter activity, 0015706 nitrate transport, 0016020 membrane.
Probab=92.85 E-value=0.084 Score=30.25 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHH
Q ss_conf 999904689887899999987
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKY 35 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~ 35 (392)
|.+|||-.+|||||+.-+.+.
T Consensus 14 isliGHSGCGKSTLLNli~Gl 34 (230)
T TIGR01184 14 ISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 998512786178999998500
No 456
>KOG0097 consensus
Probab=92.85 E-value=0.69 Score=24.59 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=79.2
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEE--CCCEEEEEEECCCCHHHHHHHHH
Q ss_conf 7999990468988789999998764442001312686869862920637899982--19908999847873024677987
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYE--TDKRFYSHIDCPGHADYVKNMIT 90 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~--~~~~~i~iiD~PGH~~f~~~mi~ 90 (392)
....+||...-|||-|+...+.+. .|--+++ -|-+..+..-.+ .++-++-|-||.|.+.|-.-+-.
T Consensus 12 fkyiiigdmgvgkscllhqftekk--------fmadcph----tigvefgtriievsgqkiklqiwdtagqerfravtrs 79 (215)
T KOG0097 12 FKYIIIGDMGVGKSCLLHQFTEKK--------FMADCPH----TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 79 (215)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH--------HHHCCCC----CCCEECCEEEEEEECCEEEEEEEECCCHHHHHHHHHH
T ss_conf 778887246554778888887767--------7505985----2403123069996074899997313257989998898
Q ss_pred HHHCCCCEEEEECCCCCCCCCHHHHHH----HHHHCCCCC--EEEEECCCCCCCC-HHHHHHCCCCCCEEEEEEEEEEEE
Q ss_conf 740023314520123443321067788----886318760--2331002333561-222110123210011101453221
Q gi|254780263|r 91 GATQADGAILVCAAEDGPKPQTREHIL----LARQIGISS--IVVYMNKVDAVDD-DELLDISEYEIRDLLKEHKYSDDT 163 (392)
Q Consensus 91 g~~~~D~ailvVda~~G~~~QT~eh~~----l~~~lgi~~--iIv~iNKmD~v~~-~~~~~~i~~~i~~~l~~~~~~~~~ 163 (392)
=-..+-+|++|-|.+. .-|..|+. -++.+--|+ ++..=||.|+-+. +-.++ +-+.+..+.+ .
T Consensus 80 yyrgaagalmvyditr---rstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye----eak~faeeng----l 148 (215)
T KOG0097 80 YYRGAAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE----EAKEFAEENG----L 148 (215)
T ss_pred HHCCCCCEEEEEEEHH---HHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHH----HHHHHHHHCC----E
T ss_conf 8606665068997411---334666888886534148997189996561114450378689----9998887559----0
Q ss_pred ECCCCEEEEEEE
Q ss_conf 023311467641
Q gi|254780263|r 164 PIIRGSALCALQ 175 (392)
Q Consensus 164 pii~~sa~~g~~ 175 (392)
.++.+||.+|-+
T Consensus 149 ~fle~saktg~n 160 (215)
T KOG0097 149 MFLEASAKTGQN 160 (215)
T ss_pred EEEEECCCCCCC
T ss_conf 899812323676
No 457
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=92.78 E-value=0.23 Score=27.57 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=54.1
Q ss_pred CCEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 99089998478730246779877400233145201234433210677888863187602331002333561222110123
Q gi|254780263|r 69 DKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEY 148 (392)
Q Consensus 69 ~~~~i~iiD~PGH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v~~~~~~~~i~~ 148 (392)
+.+-|-|||||- =.-++|+++++.+|-.|||+.-.----.=+-.--..++.+|.+-+=+++|..-.-. -|..++
T Consensus 108 ~~~D~lLIDAPA--GL~~~a~~Al~~a~elLLVvNPEi~SItDaLK~k~va~~lGt~ilG~vlNRv~~~~----tel~~~ 181 (258)
T TIGR01969 108 DDTDFLLIDAPA--GLERDAVTALAAADELLLVVNPEISSITDALKVKIVAEKLGTAILGVVLNRVTRDK----TELGRE 181 (258)
T ss_pred CCCCEEEEECCC--CCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC----CCCCHH
T ss_conf 043778874789--83378999998618664866765446777889999987608832468996023666----637888
Q ss_pred CCCEEEE
Q ss_conf 2100111
Q gi|254780263|r 149 EIRDLLK 155 (392)
Q Consensus 149 ~i~~~l~ 155 (392)
+++.+|+
T Consensus 182 eiE~iLe 188 (258)
T TIGR01969 182 EIEAILE 188 (258)
T ss_pred HHHHHHC
T ss_conf 9998847
No 458
>KOG0093 consensus
Probab=92.68 E-value=0.43 Score=25.85 Aligned_cols=141 Identities=17% Similarity=0.091 Sum_probs=74.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873024677987740
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGAT 93 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH~~f~~~mi~g~~ 93 (392)
.+-++|.--.|||+++-+-..-. ...+-=+.-||--.+...+-..+.-.+-+-||.|.+.|--=+..-.+
T Consensus 23 KlliiGnssvGKTSfl~ry~ddS----------Ft~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093 23 KLLIIGNSSVGKTSFLFRYADDS----------FTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred EEEEECCCCCCCHHHHHHHHCCC----------CCCCEEEEEEEEEEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 68997268766213557760655----------44000466311378867651464778898716651035677788761
Q ss_pred CCCCEEEEECCCCCC-CCCHHHHHHHH---HHCCCCCEEEEECCCCCCCCHHHHHHCCCCCCEEEEEEEEEEEEECCCCE
Q ss_conf 023314520123443-32106778888---63187602331002333561222110123210011101453221023311
Q gi|254780263|r 94 QADGAILVCAAEDGP-KPQTREHILLA---RQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGS 169 (392)
Q Consensus 94 ~~D~ailvVda~~G~-~~QT~eh~~l~---~~lgi~~iIv~iNKmD~v~~~~~~~~i~~~i~~~l~~~~~~~~~pii~~s 169 (392)
++++-||+-|.+.-. +.--..-.-++ .-..++ +|++-||.|+- ++ |.-.. +....+..++|| .++..|
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd-~e-Rvis~-e~g~~l~~~LGf----efFEtS 164 (193)
T KOG0093 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMD-SE-RVISH-ERGRQLADQLGF----EFFETS 164 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCE-EEEEECCCCCC-CC-EEEEH-HHHHHHHHHHCH----HHHHHC
T ss_conf 464599998547878889899898875034316861-89980455774-32-00127-888899998484----775513
Q ss_pred EEE
Q ss_conf 467
Q gi|254780263|r 170 ALC 172 (392)
Q Consensus 170 a~~ 172 (392)
|..
T Consensus 165 aK~ 167 (193)
T KOG0093 165 AKE 167 (193)
T ss_pred CCC
T ss_conf 302
No 459
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.59 E-value=0.097 Score=29.87 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
.+|++|+..+|||||+..|++.+.
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~~ 52 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999989999999743854
No 460
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.55 E-value=0.13 Score=29.01 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.++++|+..+|||||+..|++.+..
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999998799999999987288
No 461
>PRK07429 phosphoribulokinase; Provisional
Probab=92.51 E-value=0.24 Score=27.47 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=25.3
Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 38827999990468988789999998764442
Q gi|254780263|r 9 NKESLGLSTIGHVDHGKTTLTAAITKYYSEEK 40 (392)
Q Consensus 9 ~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~ 40 (392)
+||.+ |+|+|--.|||||++.+|...++.+.
T Consensus 6 ~rP~I-IGIAGgSGSGKTTv~r~I~~~fg~~~ 36 (331)
T PRK07429 6 DRPVI-IGVAGDSGCGKSTFLRRLADLFGEEL 36 (331)
T ss_pred CCCEE-EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99989-99857887789999999999838887
No 462
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.48 E-value=0.11 Score=29.49 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.++++|...+|||||+..|++.+..
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~gl~~~ 56 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLNT 56 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 9999999999799999999603578
No 463
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.43 E-value=0.13 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99990468988789999998764
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
|+|+|...||||||+..|...+.
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889998859999999999809
No 464
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=92.36 E-value=0.037 Score=32.44 Aligned_cols=83 Identities=19% Similarity=0.359 Sum_probs=70.0
Q ss_pred CEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECH
Q ss_conf 00000001355445430148742453489679995068743212541210012114432100136664112454322021
Q gi|254780263|r 209 LMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRG 288 (392)
Q Consensus 209 r~~I~~vf~i~g~G~Vv~GrV~sG~l~~Gd~i~i~p~~~~~~~~kv~si~~~~~~v~~a~aGd~v~l~Lkgi~~~di~rG 288 (392)
..-+..+|+.+-.|.+....+.+|.++.+..+.+...+-.....++.++..++.++.+...|..|++.++ ...|++.|
T Consensus 501 ~~~~~~~~~~~~~g~~~g~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~g~~cg~~~~--~~~~~~~g 578 (594)
T TIGR00487 501 LAEVRAVFNVPKIGTIAGCYVTEGVIKRGNPLRLLRDGVVIFEGEIDSLKRFKDDVKEVSEGYECGIGID--NYNDIKEG 578 (594)
T ss_pred HHHHHHHHCCCCCCCCCCCEEECCEEECCCCCEEEECCEEEECCCHHHHHHHCCHHHHHHCCCCCCEEEC--CCCCCCCC
T ss_conf 3555555315642210121021451212664124316525750523444430001577633320221322--65543224
Q ss_pred HEEEC
Q ss_conf 17732
Q gi|254780263|r 289 RVVCA 293 (392)
Q Consensus 289 dvl~~ 293 (392)
|++-.
T Consensus 579 d~~~~ 583 (594)
T TIGR00487 579 DIIEA 583 (594)
T ss_pred CHHHH
T ss_conf 21334
No 465
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=92.28 E-value=0.092 Score=30.00 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.+|++|+..+|||||+..|++.+..
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl~~p 54 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998599999999677657
No 466
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.27 E-value=0.81 Score=24.13 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=32.7
Q ss_pred EEEEECCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEEC
Q ss_conf 999904689887899999987-6444200131268686986292063789998219908999847
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKY-YSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDC 78 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~-~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~ 78 (392)
++|+|.-+||||||+++++-. +++..... .-....=..+|-.--.-...|+.+++.|.+.=.
T Consensus 28 ~lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~~g~~~~~V~l~F~~~g~~Y~i~R~ 90 (908)
T COG0419 28 FLIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIRAGEKSASVELEFEVNGKKYRIERE 90 (908)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHCCCCCEEEEEEEEECCEEEEEEEE
T ss_conf 799899999788999999999828987754--401558986588607999999989979999998
No 467
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=92.17 E-value=0.14 Score=28.90 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=22.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99990468988789999998764442
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSEEK 40 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~~~ 40 (392)
|+|+|...|||||++..|...++..+
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~~ 27 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGREG 27 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989985719999999999966058
No 468
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.15 E-value=0.12 Score=29.27 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.5
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
.++++||-.||||||+.+|.+.+.
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gll~ 77 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999994999849999999975888
No 469
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=92.06 E-value=0.25 Score=27.35 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 882799999046898878999999876444
Q gi|254780263|r 10 KESLGLSTIGHVDHGKTTLTAAITKYYSEE 39 (392)
Q Consensus 10 k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~ 39 (392)
+..+-|+|.|-..+|||||...|...+...
T Consensus 32 ~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~ 61 (230)
T PRK09270 32 QRRTVVGIAGPPGAGKSTLAETLWEALSQQ 61 (230)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 971899998999889999999999998623
No 470
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.06 E-value=0.15 Score=28.70 Aligned_cols=24 Identities=21% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
.+|++|...+|||||+..|++.+.
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999999989999999823861
No 471
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.16 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 99999046898878999999876
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYY 36 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~ 36 (392)
+|.++|...|||||+...|...+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 79998999998899999999976
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.00 E-value=0.16 Score=28.54 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=29.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE
Q ss_conf 99999046898878999999876444200131268686986292063
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~ 60 (392)
||+.+|+-.+||||+...|...++- ..-++|.. -|+.-|++|.
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~---~fiD~D~~-Ie~~~g~si~ 43 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL---PFVDLDEL-IEQRAGMSIP 43 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC---CEEECCHH-HHHHHCCCHH
T ss_conf 9899889999889999999999798---97968599-9999499999
No 473
>PTZ00258 GTP-binding protein; Provisional
Probab=91.99 E-value=0.41 Score=25.99 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=51.1
Q ss_pred HHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE--EEEEEE------------ECC--
Q ss_conf 2103882799999046898878999999876444200131268686986292063--789998------------219--
Q gi|254780263|r 6 YVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA--TAHVSY------------ETD-- 69 (392)
Q Consensus 6 ~~~~k~~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~------------~~~-- 69 (392)
.-|...++.++++|=...|||||-.+||.... +...+. . -||+ .+..+. ..+
T Consensus 16 ~~~~~~~m~iGivGlPNvGKSTlFnAlT~~~v-~~aNyP--F---------~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ 83 (392)
T PTZ00258 16 LGRPGNNLKMGIVGLPNVGKSTTFNALSKQQV-PAENFP--F---------CTIDPNTARVPVPDERFDKLCQFFKPKSI 83 (392)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCC--C---------CCCCCCEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 47777785567866999978999999877997-424899--8---------88778327996784568899875187761
Q ss_pred -CEEEEEEECCC-----CHH--HHHHHHHHHHCCCCEEEEECCC
Q ss_conf -90899984787-----302--4677987740023314520123
Q gi|254780263|r 70 -KRFYSHIDCPG-----HAD--YVKNMITGATQADGAILVCAAE 105 (392)
Q Consensus 70 -~~~i~iiD~PG-----H~~--f~~~mi~g~~~~D~ailvVda~ 105 (392)
--.+.|+|.|| |+- ....-+.-++++|+-+-||+|.
T Consensus 84 ipa~ve~vDIAGLV~GAs~G~GLGNkFL~~iR~~DaiihVVR~F 127 (392)
T PTZ00258 84 VPATLDIVDIAGLVKGASKGEGLGNAFLSHIRACDGIYHVVRAF 127 (392)
T ss_pred EEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 01468999734557873026885189999988400799999872
No 474
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=91.83 E-value=0.13 Score=29.04 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHH-HHHH
Q ss_conf 999990468988789999998-7644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITK-YYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~-~~~~ 38 (392)
-++|+|..+||||||+++|+. .+++
T Consensus 32 ~f~i~G~tGAGKtsLldAI~yALYGk 57 (1063)
T TIGR00618 32 LFVICGKTGAGKTSLLDAITYALYGK 57 (1063)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 36777889983545999999987288
No 475
>KOG1487 consensus
Probab=91.82 E-value=0.13 Score=29.01 Aligned_cols=56 Identities=23% Similarity=0.203 Sum_probs=37.9
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEECCCEEEEEEECCCC
Q ss_conf 99999046898878999999876444200131268686986292063789998219908999847873
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGH 81 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~iiD~PGH 81 (392)
+++++|..--|||||+-.|++..+..+... +-|...-.-...+++.++-+.|.||-
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasye------------fttl~~vpG~~~y~gaKiqlldlpgi 116 (358)
T KOG1487 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYE------------FTTLTTVPGVIRYKGAKIQLLDLPGI 116 (358)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCCC------------CEEEEEECCEEECCCCCEEEECCCCH
T ss_conf 553785376662433223018887655433------------22689706667404562343048540
No 476
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.77 E-value=0.93 Score=23.77 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=27.5
Q ss_pred CCEEEEEEECC-CCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 99089998478-7302467798774002331452012344332106778888631876023310023335
Q gi|254780263|r 69 DKRFYSHIDCP-GHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDAV 137 (392)
Q Consensus 69 ~~~~i~iiD~P-GH~~f~~~mi~g~~~~D~ailvVda~~G~~~QT~eh~~l~~~lgi~~iIv~iNKmD~v 137 (392)
..+-|-|||+| |-.+--..++. ..+|.+++|+...+-.....++-+..++..+++-+=|+.|+.+..
T Consensus 165 ~~~D~vIID~PP~~g~~d~~i~~--~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~ 232 (265)
T COG0489 165 GEYDYVIIDTPPGTGDADATVLQ--RIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFI 232 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH--HCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 68888999699986427778875--138859999667735599999999999874993479996686666
No 477
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.71 E-value=0.15 Score=28.75 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
.++++|+-.+|||||+..|.+.+.
T Consensus 30 ~vaiiG~nGsGKSTL~~~l~Gll~ 53 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999970685
No 478
>PTZ00243 ABC transporter; Provisional
Probab=91.62 E-value=0.14 Score=28.79 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99990468988789999998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITK 34 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~ 34 (392)
.+|+|.|.+|||||+.+|++
T Consensus 689 ~~IvG~vGSGKSSLL~aiLG 708 (1560)
T PTZ00243 689 TVVLGATGSGKSTLLQSLLS 708 (1560)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
No 479
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=91.60 E-value=0.66 Score=24.69 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=21.6
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764442
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEK 40 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~ 40 (392)
+|.+-|-...|||||+..+...+.+.+
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~~~ 27 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKSEG 27 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 989978999889999999999998679
No 480
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.55 E-value=0.16 Score=28.53 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.+|++|+..+|||||+..|++.+..
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~gl~~p 89 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998199999999578727
No 481
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.54 E-value=0.16 Score=28.45 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.+|++|...+|||||+..|.+.+..
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~p 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998099999999666667
No 482
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.41 E-value=0.15 Score=28.60 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.++++|...+|||||+..|++.+..
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998099999998555656
No 483
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP); InterPro: IPR005292 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to the ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux reduced its function. The C-terminal domain seems to be highly conserved. ; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=91.39 E-value=0.17 Score=28.32 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999904689887899999987644
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
+|++|.|.+|||+|+-+|++-..|
T Consensus 670 VAVVG~VGCGKSSL~SALLaEM~K 693 (1542)
T TIGR00957 670 VAVVGQVGCGKSSLLSALLAEMDK 693 (1542)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 898757787768999999863202
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.38 E-value=0.16 Score=28.43 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.7
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 999990468988789999998764
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
-+|++|+-.||||||+..|.+.+.
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~GLl~ 58 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999819999999970788
No 485
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.37 E-value=0.17 Score=28.33 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHHHCCCCCCCCHHHHHCCCEEEEEEEEEEC-CCEEEEEEECCC----C--HHH
Q ss_conf 9999904689887899999987--644420013126868698629206378999821-990899984787----3--024
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKY--YSEEKKEYGDIDSAPEEKLRGITIATAHVSYET-DKRFYSHIDCPG----H--ADY 84 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~--~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~iiD~PG----H--~~f 84 (392)
=..+||-..+||||++-..-.. +...... .-....| |.+ ++| -.-.--+|||.| | .++
T Consensus 127 Wy~viG~pgsGKTtal~~sgl~Fpl~~~~~~-------~~~~~~g-T~~-----cdwwf~deaVlIDtaGry~~q~s~~~ 193 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNSGLQFPLAEQMGA-------LGLAGPG-TRN-----CDWWFTDEAVLIDTAGRYITQDSADE 193 (1188)
T ss_pred CEEEECCCCCCCCHHHHCCCCCCCCHHHHCC-------CCCCCCC-CCC-----CCCCCCCCEEEECCCCCEECCCCCCH
T ss_conf 0588548889840087515536661555331-------2226888-733-----57542553489858752443667502
Q ss_pred HHH-----------HHHHHHCCCCEEEEECCCC--CCCCCHHHH-HHH--------HHHCC--CCCEEEEECCCCCCC-C
Q ss_conf 677-----------9877400233145201234--433210677-888--------86318--760233100233356-1
Q gi|254780263|r 85 VKN-----------MITGATQADGAILVCAAED--GPKPQTREH-ILL--------ARQIG--ISSIVVYMNKVDAVD-D 139 (392)
Q Consensus 85 ~~~-----------mi~g~~~~D~ailvVda~~--G~~~QT~eh-~~l--------~~~lg--i~~iIv~iNKmD~v~-~ 139 (392)
... -.|...-.|++++.+|+.+ +..++-+++ +.- -..|+ +| +.+++||+|++. .
T Consensus 194 ~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P-VYl~lTk~Dll~GF 272 (1188)
T COG3523 194 VDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP-VYLVLTKADLLPGF 272 (1188)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEEECCCCCCCH
T ss_conf 34888999888999735578886379997899973899999999999999999999984156776-38998621002157
Q ss_pred HHHHHHC
Q ss_conf 2221101
Q gi|254780263|r 140 DELLDIS 146 (392)
Q Consensus 140 ~~~~~~i 146 (392)
++.|...
T Consensus 273 ~efF~~l 279 (1188)
T COG3523 273 EEFFGSL 279 (1188)
T ss_pred HHHHHCC
T ss_conf 9987333
No 486
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.35 E-value=0.25 Score=27.35 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=31.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEE
Q ss_conf 99999046898878999999876444200131268686986292063
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIA 60 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi~ 60 (392)
||+.+|.-.+||||+-..|.+.++- ..-++|.. -|+.-|++|.
T Consensus 6 nI~LiG~mGsGKstvgk~LA~~l~~---~fiD~D~~-Ie~~~g~si~ 48 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQLNM---EFYDSDQE-IEKRTGADIG 48 (172)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC---CEEECHHH-HHHHHCCCHH
T ss_conf 2898899999889999999999699---96878099-9999798999
No 487
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=91.30 E-value=0.18 Score=28.16 Aligned_cols=32 Identities=9% Similarity=0.033 Sum_probs=22.4
Q ss_pred EEEEECCCEEECCCCEEEEEECCEEEEEEEEE
Q ss_conf 99997781775469849999899699989995
Q gi|254780263|r 357 LEVELIYPIAMEPNQTFSMREGGKTVGAGLIL 388 (392)
Q Consensus 357 v~l~l~~pi~~e~~~rfilRd~~~tig~G~I~ 388 (392)
+-+...++--+...|++++-|+|+.+.-|-=-
T Consensus 523 ~iiIaHRlsti~~aD~Iivl~~G~Ive~Gth~ 554 (585)
T PRK13657 523 TFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (585)
T ss_pred EEEEECCHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 99960688889969999999898899972799
No 488
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.24 E-value=0.17 Score=28.38 Aligned_cols=11 Identities=36% Similarity=0.302 Sum_probs=6.7
Q ss_pred CHHHHHHCCCC
Q ss_conf 20344310252
Q gi|254780263|r 188 ALMKAVDTHIP 198 (392)
Q Consensus 188 ~Ll~~i~~~~~ 198 (392)
||+.++..++|
T Consensus 159 TllnaL~~~i~ 169 (323)
T PRK13833 159 TLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998640
No 489
>KOG0088 consensus
Probab=91.24 E-value=0.91 Score=23.83 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=61.1
Q ss_pred EEEEEEECCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCHHHHHCCCEEEEEEE----EEECCCEEEEEEECCCCHHHHH-
Q ss_conf 7999990468988789999998-764442001312686869862920637899----9821990899984787302467-
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITK-YYSEEKKEYGDIDSAPEEKLRGITIATAHV----SYETDKRFYSHIDCPGHADYVK- 86 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~-~~~~~~~~~~~~D~~~~E~~rGiTi~~~~~----~~~~~~~~i~iiD~PGH~~f~~- 86 (392)
+.++.+|.-=-|||+|+=+... ++.. +| =-|+..+|. ..+-....++|-||.|.+.|-.
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~-----------kH----lsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHAL 78 (218)
T KOG0088 14 FKIVLLGEGCVGKTSLVLRYVENKFNC-----------KH----LSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHAL 78 (218)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCH-----------HH----HHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHCC
T ss_conf 689997487556068999998723230-----------46----789998876330462111311432124445765235
Q ss_pred -HHHHHHHCCCCEEEEECCCCCCCCCH--HHHHHHHHHCCCC-CEEEEECCCCCC
Q ss_conf -79877400233145201234433210--6778888631876-023310023335
Q gi|254780263|r 87 -NMITGATQADGAILVCAAEDGPKPQT--REHILLARQIGIS-SIVVYMNKVDAV 137 (392)
Q Consensus 87 -~mi~g~~~~D~ailvVda~~G~~~QT--~eh~~l~~~lgi~-~iIv~iNKmD~v 137 (392)
... -...|+||||.|-++--.=|- -....+-..+|-. .++++=||+|+-
T Consensus 79 GPIY--YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLE 131 (218)
T KOG0088 79 GPIY--YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLE 131 (218)
T ss_pred CCEE--EECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHH
T ss_conf 7537--7079962899864446889999999999998718835999953744678
No 490
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=91.20 E-value=0.21 Score=27.77 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99990468988789999998764
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYS 37 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~ 37 (392)
|+|-|.+.+|||||+..|...++
T Consensus 2 I~IEGnIG~GKTTl~~~La~~l~ 24 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89967856799999999999859
No 491
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.20 E-value=0.18 Score=28.14 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
.++++|...+|||||+..|++.+..
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p 54 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999989998299999999667667
No 492
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=91.19 E-value=0.16 Score=28.44 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 999904689887899999987644
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
++.+|+-.||||||+..|-+-|.-
T Consensus 37 v~L~G~SGaGKSTlLk~lYaNYlp 60 (224)
T TIGR02324 37 VALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 885368887678999976630474
No 493
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.18 E-value=0.52 Score=25.36 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.1
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9999904689887899999987644
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSE 38 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~ 38 (392)
-++++|+-.||||||+..|.+....
T Consensus 28 i~gl~G~NGaGKSTLl~~i~Gl~~p 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999878997999999999768577
No 494
>KOG3883 consensus
Probab=91.17 E-value=1.1 Score=23.39 Aligned_cols=107 Identities=22% Similarity=0.178 Sum_probs=0.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEE-EEEEEEEECCC---EEEEEEECCCCHHHHHHHH
Q ss_conf 9999904689887899999987644420013126868698629206-37899982199---0899984787302467798
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI-ATAHVSYETDK---RFYSHIDCPGHADYVKNMI 89 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~~D~~~~E~~rGiTi-~~~~~~~~~~~---~~i~iiD~PGH~~f~~~mi 89 (392)
.+++||--.-|||.++..|+.....-+.+.. =|| |+-.+..+++. -.+.|-||.|-.++--+.-
T Consensus 11 kVvVcG~k~VGKTaileQl~yg~~~~~~e~~------------pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLp 78 (198)
T KOG3883 11 KVVVCGMKSVGKTAILEQLLYGNHVPGTELH------------PTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELP 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCC------------CCHHHHEEEEEECCCCHHHEEEEEECCCCCCCHHHHH
T ss_conf 7999777452289999999851678897666------------6344224676406878101688865244557600202
Q ss_pred HH-HHCCCCEEEEECCCCCCCCCHHHHHHHHHHCC-----------CCCEEEEECCCCCCCC
Q ss_conf 77-40023314520123443321067788886318-----------7602331002333561
Q gi|254780263|r 90 TG-ATQADGAILVCAAEDGPKPQTREHILLARQIG-----------ISSIVVYMNKVDAVDD 139 (392)
Q Consensus 90 ~g-~~~~D~ailvVda~~G~~~QT~eh~~l~~~lg-----------i~~iIv~iNKmD~v~~ 139 (392)
+. .+.+|+-+||-|. ...|.++-..+++ || |+|.-||.|+.++
T Consensus 79 rhy~q~aDafVLVYs~------~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p 133 (198)
T KOG3883 79 RHYFQFADAFVLVYSP------MDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEP 133 (198)
T ss_pred HHHHCCCCEEEEEECC------CCHHHHHHHHHHHHHHHHCCCCCCCC-EEEEECHHHCCCC
T ss_conf 7671057657999637------99889889999999986255655122-8997300101364
No 495
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=91.16 E-value=0.16 Score=28.49 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHH
Q ss_conf 999904689887899999
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAI 32 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L 32 (392)
+|++|.=.||||||+.+|
T Consensus 61 lA~mGsSGAGKTTLmn~L 78 (671)
T TIGR00955 61 LAIMGSSGAGKTTLMNAL 78 (671)
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 898478766268999998
No 496
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=91.14 E-value=0.3 Score=26.85 Aligned_cols=91 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHCCCE--EEEEEEEEECCCEEEEEEECCCC
Q ss_conf 2799999046898878999999876444200131--------2686869862920--63789998219908999847873
Q gi|254780263|r 12 SLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGD--------IDSAPEEKLRGIT--IATAHVSYETDKRFYSHIDCPGH 81 (392)
Q Consensus 12 ~~ni~~iGhvd~GKSTL~~~L~~~~~~~~~~~~~--------~D~~~~E~~rGiT--i~~~~~~~~~~~~~i~iiD~PGH 81 (392)
.+.++++|-...|||||-.+||... .+...+.. +=..+.+|-.-.. ...... +-.-.+.|+|.+|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k---~~~~~ve~vDIAGL 77 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPK---IRPAPVEFVDIAGL 77 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCC---EEEEEEEEEEECCC
T ss_conf 8426774189885888999997489-6424898542657732796473678999875389974---77610489982453
Q ss_pred -------HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf -------0246779877400233145201234
Q gi|254780263|r 82 -------ADYVKNMITGATQADGAILVCAAED 106 (392)
Q Consensus 82 -------~~f~~~mi~g~~~~D~ailvVda~~ 106 (392)
+-..-.-+.-++.+|+-+.||+|.+
T Consensus 78 V~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 78 VKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCEEEEEEEECC
T ss_conf 78854688864787876551485899998538
No 497
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.10 E-value=0.17 Score=28.36 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99990468988789999998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITK 34 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~ 34 (392)
++++|+-.+|||||+..|.+
T Consensus 39 vaivG~nGsGKSTLlk~l~G 58 (273)
T PRK13632 39 VAILGHNGSGKSTISKILTG 58 (273)
T ss_pred EEEECCCCCHHHHHHHHHHC
T ss_conf 99999999869999999973
No 498
>KOG0054 consensus
Probab=91.09 E-value=0.18 Score=28.17 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99990468988789999998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITK 34 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~ 34 (392)
+||+|.|.+|||+|+-++++
T Consensus 550 vaVvG~vGsGKSSLL~AiLG 569 (1381)
T KOG0054 550 VAVVGPVGSGKSSLLSAILG 569 (1381)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989998888999999965
No 499
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.09 E-value=0.18 Score=28.20 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=0.0
Q ss_pred EEEEECCCCCHHHHHHHHHH
Q ss_conf 99990468988789999998
Q gi|254780263|r 15 LSTIGHVDHGKTTLTAAITK 34 (392)
Q Consensus 15 i~~iGhvd~GKSTL~~~L~~ 34 (392)
++++|+-.||||||+..|.+
T Consensus 36 v~IiG~nGsGKSTL~k~l~G 55 (304)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNA 55 (304)
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99987999859999999966
No 500
>PRK06696 uridine kinase; Validated
Probab=91.05 E-value=0.3 Score=26.86 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7999990468988789999998764442
Q gi|254780263|r 13 LGLSTIGHVDHGKTTLTAAITKYYSEEK 40 (392)
Q Consensus 13 ~ni~~iGhvd~GKSTL~~~L~~~~~~~~ 40 (392)
+.|||-|--.||||||...|...+...+
T Consensus 27 l~VgIdG~~gSGKTTlA~~La~~L~~~G 54 (227)
T PRK06696 27 LRVAIDGITASGKTTFANELAEEIKKRG 54 (227)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 8999778998787999999999997469
Done!