HHsearch alignment for GI: 254780263 and conserved domain: smart00053
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.78 E-value=0.00016 Score=47.04 Aligned_cols=124 Identities=19% Similarity=0.288 Sum_probs=70.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHHHCCCC-------------------------CC--CCHH----HH------H
Q ss_conf 99999046898878999999876--444200131-------------------------26--8686----98------6
Q gi|254780263|r 14 GLSTIGHVDHGKTTLTAAITKYY--SEEKKEYGD-------------------------ID--SAPE----EK------L 54 (392)
Q Consensus 14 ni~~iGhvd~GKSTL~~~L~~~~--~~~~~~~~~-------------------------~D--~~~~----E~------~ 54 (392)
T Consensus 28 qiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~g~~ 107 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTN 107 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 48998887875899999987887555689727644069997338865124774378634898999999999887532678
Q ss_pred CCCEEEEEEEEEEC-CCEEEEEEECCCC------------HHHHHHHHHH-HHCCCCEEEE-ECCCCCCCCCHHHHHHHH
Q ss_conf 29206378999821-9908999847873------------0246779877-4002331452-012344332106778888
Q gi|254780263|r 55 RGITIATAHVSYET-DKRFYSHIDCPGH------------ADYVKNMITG-ATQADGAILV-CAAEDGPKPQTREHILLA 119 (392)
Q Consensus 55 rGiTi~~~~~~~~~-~~~~i~iiD~PGH------------~~f~~~mi~g-~~~~D~ailv-Vda~~G~~~QT~eh~~l~ 119 (392)
T Consensus 108 ~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~--anq~~l~lA 185 (240)
T smart00053 108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDL--ANSDALKLA 185 (240)
T ss_pred CCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH--HHHHHHHHH
T ss_conf 876788559999479998854414754124678998567999999999998479880699984078567--661999999
Q ss_pred HHC---CCCCEEEEECCCCCCCCH
Q ss_conf 631---876023310023335612
Q gi|254780263|r 120 RQI---GISSIVVYMNKVDAVDDD 140 (392)
Q Consensus 120 ~~l---gi~~iIv~iNKmD~v~~~ 140 (392)
T Consensus 186 r~~Dp~g~RT-iGVlTKpDl~~~g 208 (240)
T smart00053 186 KEVDPQGERT-IGVITKLDLMDEG 208 (240)
T ss_pred HHHCCCCCEE-EEEECCCCCCCCC
T ss_conf 9719999828-9997353345777