RPSBLAST alignment for GI: 254780263 and conserved domain: TIGR00485
>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 394
Score = 527 bits (1358), Expect = e-150
Identities = 233/397 (58%), Positives = 289/397 (72%), Gaps = 8/397 (2%)
Query: 1 MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEE----KKEYGDIDSAPEEKLRG 56
M ++++ R K + + TIGHVDHGKTTLTAAIT ++E + Y ID+APEEK RG
Sbjct: 1 MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG 60
Query: 57 ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
ITI TAHV YET+ R Y+H+DCPGHADYVKNMITGA Q DGAILV +A DGP PQTREHI
Sbjct: 61 ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI 120
Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
LLARQ+G+ IVV++NK D VDD+ELL++ E E+R+LL E+ + DDTPIIRGSAL AL+
Sbjct: 121 LLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180
Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
G + E I LM AVD +IPTP+R D PFLM IE I GRGTVVTG ++RG +K
Sbjct: 181 GDAE--WEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVK 238
Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
G +VEI+G+ + K T VEMFRK+LDE AGDNVGLLLRG+ R ++ RG V+ PG
Sbjct: 239 VGEEVEIVGLKDTR-KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297
Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
SI+ +++F A VY+L EGGR T F YRPQF+ T DVTG I L G + VMPGD V
Sbjct: 298 SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNV 357
Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
+ VELI PIA+E F++REGG+TVGAG++ +IIE
Sbjct: 358 KMTVELISPIALEQGMRFAIREGGRTVGAGVVSKIIE 394