RPSBLAST alignment for GI: 254780263 and conserved domain: TIGR00485

>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. Length = 394
 Score =  527 bits (1358), Expect = e-150
 Identities = 233/397 (58%), Positives = 289/397 (72%), Gaps = 8/397 (2%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEE----KKEYGDIDSAPEEKLRG 56
           M ++++ R K  + + TIGHVDHGKTTLTAAIT   ++E     + Y  ID+APEEK RG
Sbjct: 1   MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG 60

Query: 57  ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
           ITI TAHV YET+ R Y+H+DCPGHADYVKNMITGA Q DGAILV +A DGP PQTREHI
Sbjct: 61  ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI 120

Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
           LLARQ+G+  IVV++NK D VDD+ELL++ E E+R+LL E+ +  DDTPIIRGSAL AL+
Sbjct: 121 LLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180

Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
           G  +   E  I  LM AVD +IPTP+R  D PFLM IE    I GRGTVVTG ++RG +K
Sbjct: 181 GDAE--WEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVK 238

Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
            G +VEI+G+   + K   T VEMFRK+LDE  AGDNVGLLLRG+ R ++ RG V+  PG
Sbjct: 239 VGEEVEIVGLKDTR-KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297

Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
           SI+ +++F A VY+L   EGGR T F   YRPQF+  T DVTG I L  G + VMPGD V
Sbjct: 298 SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNV 357

Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
            + VELI PIA+E    F++REGG+TVGAG++ +IIE
Sbjct: 358 KMTVELISPIALEQGMRFAIREGGRTVGAGVVSKIIE 394