RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780263|ref|YP_003064676.1| translation elongation factor
Tu [Candidatus Liberibacter asiaticus str. psy62]
         (392 letters)



>gnl|CDD|178823 PRK00049, PRK00049, elongation factor Tu; Reviewed.
          Length = 396

 Score =  620 bits (1601), Expect = e-178
 Identities = 239/397 (60%), Positives = 295/397 (74%), Gaps = 6/397 (1%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRG 56
           M ++++ R K  + + TIGHVDHGKTTLTAAITK  ++    E K Y  ID APEEK RG
Sbjct: 1   MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARG 60

Query: 57  ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
           ITI TAHV YET+KR Y+H+DCPGHADYVKNMITGA Q DGAILV +A DGP PQTREHI
Sbjct: 61  ITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120

Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
           LLARQ+G+  IVV++NK D VDD+ELL++ E E+R+LL ++ +  DDTPIIRGSAL AL+
Sbjct: 121 LLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180

Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
           G + E  E  I  LM AVD++IPTP+R++D PFLM IE    I GRGTVVTG ++RG IK
Sbjct: 181 GDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIK 240

Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
            G +VEI+G+   + K   T VEMFRK LDE  AGDNVG LLRG+ R DV RG+V+  PG
Sbjct: 241 VGEEVEIVGIRDTQ-KTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299

Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
           SI  +++F A VY+L+  EGGR T F + YRPQF+  T DVTG I L  G + VMPGD V
Sbjct: 300 SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNV 359

Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
           ++ VELI PIAME    F++REGG+TVGAG++ +IIE
Sbjct: 360 EMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKIIE 396


>gnl|CDD|183708 PRK12735, PRK12735, elongation factor Tu; Reviewed.
          Length = 396

 Score =  611 bits (1578), Expect = e-175
 Identities = 235/397 (59%), Positives = 293/397 (73%), Gaps = 6/397 (1%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRG 56
           M ++++ R K  + + TIGHVDHGKTTLTAAITK  ++    E K Y  ID+APEEK RG
Sbjct: 1   MAKEKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARG 60

Query: 57  ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
           ITI T+HV YET  R Y+H+DCPGHADYVKNMITGA Q DGAILV +A DGP PQTREHI
Sbjct: 61  ITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120

Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
           LLARQ+G+  IVV++NK D VDD+ELL++ E E+R+LL ++ +  DDTPIIRGSAL AL+
Sbjct: 121 LLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALE 180

Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
           G + E  E  I  LM AVD++IP P+R++D PFLM IE    I GRGTVVTG ++RG +K
Sbjct: 181 GDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVK 240

Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
            G +VEI+G+   + K   T VEMFRK LDE  AGDNVG+LLRG  R DV RG+V+  PG
Sbjct: 241 VGDEVEIVGIKETQ-KTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299

Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
           SI+ +++F A VY+L+  EGGR T F + YRPQF+  T DVTG I L  G + VMPGD V
Sbjct: 300 SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNV 359

Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
            + VELI PIAME    F++REGG+TVGAG++ +IIE
Sbjct: 360 KMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396


>gnl|CDD|183709 PRK12736, PRK12736, elongation factor Tu; Reviewed.
          Length = 394

 Score =  596 bits (1540), Expect = e-171
 Identities = 240/397 (60%), Positives = 301/397 (75%), Gaps = 8/397 (2%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSE----EKKEYGDIDSAPEEKLRG 56
           M ++++ R+K  + + TIGHVDHGKTTLTAAITK  +E    + K+Y  ID+APEEK RG
Sbjct: 1   MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERG 60

Query: 57  ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
           ITI TAHV YET+KR Y+H+DCPGHADYVKNMITGA Q DGAILV AA DGP PQTREHI
Sbjct: 61  ITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120

Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
           LLARQ+G+  +VV++NKVD VDD+ELL++ E E+R+LL E+ +  DD P+IRGSAL AL+
Sbjct: 121 LLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALE 180

Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
           G  K   ED+I  LM AVD +IPTP+R  D PFLM +E    I GRGTVVTG ++RG +K
Sbjct: 181 GDPKW--EDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVK 238

Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
            G +VEI+G+   + K   T VEMFRK LDE  AGDNVG+LLRGV+R +V RG+V+  PG
Sbjct: 239 VGDEVEIVGIKETQ-KTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297

Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
           SI+ +++F+A VYILT  EGGR T F +NYRPQF+  T DVTG I L  G++ VMPGD V
Sbjct: 298 SIKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNV 357

Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
            + VELI+PIAME    F++REGG+TVGAG + EI++
Sbjct: 358 TITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEILD 394


>gnl|CDD|178673 PLN03127, PLN03127, Elongation factor Tu; Provisional.
          Length = 447

 Score =  554 bits (1428), Expect = e-158
 Identities = 237/393 (60%), Positives = 296/393 (75%), Gaps = 6/393 (1%)

Query: 6   YVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKE----YGDIDSAPEEKLRGITIAT 61
           + R K  + + TIGHVDHGKTTLTAAITK  +EE K     + +ID APEEK RGITIAT
Sbjct: 55  FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT 114

Query: 62  AHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQ 121
           AHV YET KR Y+H+DCPGHADYVKNMITGA Q DG ILV +A DGP PQT+EHILLARQ
Sbjct: 115 AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ 174

Query: 122 IGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQGTNKE 180
           +G+ S+VV++NKVD VDD+ELL++ E E+R+LL  +K+  D+ PIIRGSAL ALQGTN E
Sbjct: 175 VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDE 234

Query: 181 LGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
           +G+++I  LM AVD +IP P R LD PFLM IE    I+GRGTV TG +++G IK G +V
Sbjct: 235 IGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 294

Query: 241 EIIGMG-GKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPGSIQE 299
           EI+G+  G  LK   T VEMF+K LD+  AGDNVGLLLRG+ R DV RG+V+C PGSI+ 
Sbjct: 295 EIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKT 354

Query: 300 YSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRVDLEV 359
           Y +F A +Y+LT  EGGR T F  NYRPQF++ TADVTG++ L  G + VMPGD V    
Sbjct: 355 YKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVELPEGVKMVMPGDNVTAVF 414

Query: 360 ELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
           ELI P+ +EP Q F++REGG+TVGAG++ +++ 
Sbjct: 415 ELISPVPLEPGQRFALREGGRTVGAGVVSKVLS 447


>gnl|CDD|129576 TIGR00485, EF-Tu, translation elongation factor TU.  This alignment
           models orthologs of translation elongation factor EF-Tu
           in bacteria, mitochondria, and chloroplasts, one of
           several GTP-binding translation factors found by the
           more general pfam model GTP_EFTU. The eukaryotic
           conterpart, eukaryotic translation elongation factor 1
           (eEF-1 alpha), is excluded from this model. EF-Tu is one
           of the most abundant proteins in bacteria, as well as
           one of the most highly conserved, and in a number of
           species the gene is duplicated with identical function.
           When bound to GTP, EF-Tu can form a complex with any
           (correctly) aminoacylated tRNA except those for
           initiation and for selenocysteine, in which case EF-Tu
           is replaced by other factors. Transfer RNA is carried to
           the ribosome in these complexes for protein translation.
          Length = 394

 Score =  527 bits (1358), Expect = e-150
 Identities = 233/397 (58%), Positives = 289/397 (72%), Gaps = 8/397 (2%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEE----KKEYGDIDSAPEEKLRG 56
           M ++++ R K  + + TIGHVDHGKTTLTAAIT   ++E     + Y  ID+APEEK RG
Sbjct: 1   MAKEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARG 60

Query: 57  ITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHI 116
           ITI TAHV YET+ R Y+H+DCPGHADYVKNMITGA Q DGAILV +A DGP PQTREHI
Sbjct: 61  ITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI 120

Query: 117 LLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQ 175
           LLARQ+G+  IVV++NK D VDD+ELL++ E E+R+LL E+ +  DDTPIIRGSAL AL+
Sbjct: 121 LLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALE 180

Query: 176 GTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIK 235
           G  +   E  I  LM AVD +IPTP+R  D PFLM IE    I GRGTVVTG ++RG +K
Sbjct: 181 GDAE--WEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVK 238

Query: 236 AGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAPG 295
            G +VEI+G+   + K   T VEMFRK+LDE  AGDNVGLLLRG+ R ++ RG V+  PG
Sbjct: 239 VGEEVEIVGLKDTR-KTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297

Query: 296 SIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPGSQAVMPGDRV 355
           SI+ +++F A VY+L   EGGR T F   YRPQF+  T DVTG I L  G + VMPGD V
Sbjct: 298 SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNV 357

Query: 356 DLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
            + VELI PIA+E    F++REGG+TVGAG++ +IIE
Sbjct: 358 KMTVELISPIALEQGMRFAIREGGRTVGAGVVSKIIE 394


>gnl|CDD|178672 PLN03126, PLN03126, Elongation factor Tu; Provisional.
          Length = 478

 Score =  452 bits (1163), Expect = e-128
 Identities = 219/406 (53%), Positives = 283/406 (69%), Gaps = 19/406 (4%)

Query: 5   RYVRNKESLGLSTIGHVDHGKTTLTAAITKYY----SEEKKEYGDIDSAPEEKLRGITIA 60
           ++ R K  + + TIGHVDHGKTTLTAA+T           K+Y +ID+APEE+ RGITI 
Sbjct: 74  KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITIN 133

Query: 61  TAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLAR 120
           TA V YET+ R Y+H+DCPGHADYVKNMITGA Q DGAILV +  DGP PQT+EHILLA+
Sbjct: 134 TATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAK 193

Query: 121 QIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKY-SDDTPIIRGSALCALQG--T 177
           Q+G+ ++VV++NK D VDD+ELL++ E E+R+LL  +++  DD PII GSAL AL+    
Sbjct: 194 QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALME 253

Query: 178 NKEL--GE----DSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKR 231
           N  +  G+    D I+ LM AVD++IP PQR  D PFL+ +E    I GRGTV TG ++R
Sbjct: 254 NPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVER 313

Query: 232 GRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVV 291
           G +K G  V+I+G+   +     T VEMF+K LDEA+AGDNVGLLLRG+ +AD+ RG V+
Sbjct: 314 GTVKVGETVDIVGLRETR-STTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVL 372

Query: 292 CAPGSIQEYSRFRASVYILTASEGGRTTGFMDNYRPQFFMDTADVTGRIILSPG-----S 346
             PGSI  +++F A VY+L   EGGR + F   YRPQF+M T DVTG++          S
Sbjct: 373 AKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEES 432

Query: 347 QAVMPGDRVDLEVELIYPIAMEPNQTFSMREGGKTVGAGLILEIIE 392
           + VMPGDRV + VELI P+A E    F++REGGKTVGAG+I  IIE
Sbjct: 433 KMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 478


>gnl|CDD|183433 PRK12317, PRK12317, elongation factor 1-alpha; Reviewed.
          Length = 425

 Score =  235 bits (602), Expect = 1e-62
 Identities = 151/440 (34%), Positives = 224/440 (50%), Gaps = 82/440 (18%)

Query: 10  KESLGLSTIGHVDHGKTTLT-----------AAITKYYSEEKKEYGD--------IDSAP 50
           K  L L+ IGHVDHGK+TL              I +   EE KE G         +D   
Sbjct: 4   KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLK 63

Query: 51  EEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAED--GP 108
           EE+ RG+TI  AH  +ETDK +++ +DCPGH D+VKNMITGA+QAD A+LV AA+D  G 
Sbjct: 64  EERERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV 123

Query: 109 KPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEY-----EIRDLLKEHKY-SDD 162
            PQTREH+ LAR +GI+ ++V +NK+DAV+ DE      Y     E+  LLK   Y  DD
Sbjct: 124 MPQTREHVFLARTLGINQLIVAINKMDAVNYDE----KRYEEVKEEVSKLLKMVGYKPDD 179

Query: 163 TPIIRGSALCALQGTNKELGEDSIH-------ALMKAVDTHIPTPQRSLDAPFLMHIEGS 215
            P I  S   A +G N  + + S +        L++A+D  +  P++  D P  + I+  
Sbjct: 180 IPFIPVS---AFEGDN--VVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDV 233

Query: 216 CGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGL 275
             I G GTV  G ++ G +K G  V +    G   +VK   +EM  ++L +A  GDN+G 
Sbjct: 234 YSISGVGTVPVGRVETGVLKVGDKV-VFMPAGVVGEVK--SIEMHHEELPQAEPGDNIGF 290

Query: 276 LLRGVNRADVPRGRVVCA---PGSIQEYSRFRASVYIL---TASEGGRTTGFMDNYRPQF 329
            +RGV + D+ RG V      P ++ E   F A + +L   +A   G        Y P F
Sbjct: 291 NVRGVGKKDIKRGDVCGHPDNPPTVAE--EFTAQIVVLQHPSAITVG--------YTPVF 340

Query: 330 FMDTADVTGRII-----LSPGS--------QAVMPGDRVDLEVELIYPIAMEPNQ----- 371
              TA V          L P +        Q +  GD   ++++   P+ +E  +     
Sbjct: 341 HAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQL 400

Query: 372 -TFSMREGGKTVGAGLILEI 390
             F++R+ G+T+ AG+++++
Sbjct: 401 GRFAIRDMGQTIAAGMVIDV 420


>gnl|CDD|129574 TIGR00483, EF-1_alpha, translation elongation factor EF-1 alpha.
           This model represents the counterpart of bacterial EF-Tu
           for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1
           alpha). The trusted cutoff is set fairly high so that
           incomplete sequences will score between suggested and
           trusted cutoff levels.
          Length = 426

 Score =  189 bits (481), Expect = 1e-48
 Identities = 141/432 (32%), Positives = 226/432 (52%), Gaps = 61/432 (14%)

Query: 8   RNKESLGLSTIGHVDHGKTTLTA-------AITKYYSEE-KKEYGD-----------IDS 48
           + KE + ++ IGHVDHGK+T          AI +   E+ +KE  +           +D 
Sbjct: 3   KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDR 62

Query: 49  APEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGP 108
             EE+ RG+TI  AH  +ETDK   + +DCPGH D++KNMITGA+QAD A+LV A  DG 
Sbjct: 63  LKEERERGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE 122

Query: 109 ---KPQTREHILLARQIGISSIVVYMNKVDAVD-DDELLDISEYEIRDLLKEHKYS-DDT 163
              +PQTREH  LAR +GI+ ++V +NK+D+V+ D+E  +  + E+ +L+K+  Y+ D  
Sbjct: 123 FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTV 182

Query: 164 PIIRGSALCALQGTNKELGEDSI-----HALMKAVDTHIPTPQRSLDAPFLMHIEGSCGI 218
           P I    + A  G N     ++        L++A+D  +  P++  D P  + I+    I
Sbjct: 183 PFI---PISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSI 238

Query: 219 EGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLR 278
            G GTV  G ++ G +K G D  +    G   +VK   +EM  +++++A  GDN+G  +R
Sbjct: 239 TGVGTVPVGRVETGVLKPG-DKVVFEPAGVSGEVK--SIEMHHEQIEQAEPGDNIGFNVR 295

Query: 279 GVNRADVPRGRVVCAPGSIQEYSR-FRASVYILTASEGGRTTGFMDNYRPQFFMDTADVT 337
           GV++ D+ RG V   P +  + ++ F A + +L    G  T G    Y P F   TA + 
Sbjct: 296 GVSKKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQ-HPGAITVG----YTPVFHCHTAQIA 350

Query: 338 GRII-----LSPGSQAVM--------PGDRVDLEVELIYPIAME------PNQTFSMREG 378
            R         P +  V+         GD   ++ +   P+ +E      P   F++R+ 
Sbjct: 351 CRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDM 410

Query: 379 GKTVGAGLILEI 390
           G+TV AG+I+++
Sbjct: 411 GQTVAAGMIIDV 422


>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB.
           In prokaryotes, the incorporation of selenocysteine as
           the 21st amino acid, encoded by TGA, requires several
           elements: SelC is the tRNA itself, SelD acts as a donor
           of reduced selenium, SelA modifies a serine residue on
           SelC into selenocysteine, and SelB is a
           selenocysteine-specific translation elongation factor.
           3-prime or 5-prime non-coding elements of mRNA have been
           found as probable structures for directing
           selenocysteine incorporation. This model describes the
           elongation factor SelB, a close homolog rf EF-Tu. It may
           function by replacing EF-Tu. A C-terminal domain not
           found in EF-Tu is in all SelB sequences in the seed
           alignment except that from Methanococcus jannaschii.
           This model does not find an equivalent protein for
           eukaryotes.
          Length = 581

 Score =  160 bits (407), Expect = 4e-40
 Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 26/280 (9%)

Query: 17  TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHI 76
           T GHVDHGKTTL  A+T             D  PEEK RG+TI      +         I
Sbjct: 5   TAGHVDHGKTTLLKALTGI---------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFI 55

Query: 77  DCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVDA 136
           D PGH  ++ N I G    D A+LV  A++G   QT EH+ +   +GI   +V + K D 
Sbjct: 56  DVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115

Query: 137 VDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGE--DSIHALMKAVD 194
           V ++E +  +E  ++ +L  + +  +  I + SA      T + +GE    +  L++++D
Sbjct: 116 V-NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK-----TGQGIGELKKELKNLLESLD 169

Query: 195 THIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKC 254
                  + +  P  M I+ +  ++G GTVVTG    G +K G ++ ++ +   +++VK 
Sbjct: 170 I------KRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPI-NHEVRVK- 221

Query: 255 TDVEMFRKKLDEAIAGDNVGLLLRGVNRADVPRGRVVCAP 294
             ++   + ++ A AG  + L L  V    + RG ++  P
Sbjct: 222 -AIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260


>gnl|CDD|185474 PTZ00141, PTZ00141, elongation factor 1- alpha; Provisional.
          Length = 446

 Score =  156 bits (397), Expect = 7e-39
 Identities = 114/342 (33%), Positives = 170/342 (49%), Gaps = 48/342 (14%)

Query: 8   RNKESLGLSTIGHVDHGKTTLTAAIT-----------KYYSEEKKEYGD--------IDS 48
           + K  + L  IGHVD GK+T T  +            + + +E  E G         +D 
Sbjct: 3   KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDK 62

Query: 49  APEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDG- 107
              E+ RGITI  A   +ET K +++ ID PGH D++KNMITG +QAD AILV A+  G 
Sbjct: 63  LKAERERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE 122

Query: 108 ------PKPQTREHILLARQIGISSIVVYMNKVD--AVD-DDELLDISEYEIRDLLKEHK 158
                    QTREH LLA  +G+  ++V +NK+D   V+   E  D  + E+   LK+  
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG 182

Query: 159 YS-DDTPIIRGSALCALQGTNKELGEDSIH-------ALMKAVDTHIPTPQRSLDAPFLM 210
           Y+ +  P I    +   QG N  + E S +        L++A+DT  P P+R +D P  +
Sbjct: 183 YNPEKVPFI---PISGWQGDN--MIEKSDNMPWYKGPTLLEALDTLEP-PKRPVDKPLRL 236

Query: 211 HIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAG 270
            ++    I G GTV  G ++ G +K G  V     G   +  +   VEM  ++L EA+ G
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG---VTTEVKSVEMHHEQLAEAVPG 293

Query: 271 DNVGLLLRGVNRADVPRGRVVCAPGS--IQEYSRFRASVYIL 310
           DNVG  ++ V+  D+ RG V     +   +E + F A V +L
Sbjct: 294 DNVGFNVKNVSVKDIKRGYVASDSKNDPAKECADFTAQVIVL 335


>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
           gamma; Validated.
          Length = 411

 Score =  153 bits (388), Expect = 1e-37
 Identities = 108/335 (32%), Positives = 158/335 (47%), Gaps = 82/335 (24%)

Query: 16  STIGHVDHGKTTLTAAI----TKYYSEEKKEYGDIDSAPEEKLRGITI----ATAHVS-- 65
             +GHVDHGKTTL  A+    T  +SEE K             RGITI    A A +   
Sbjct: 13  GMVGHVDHGKTTLVQALTGVWTDRHSEELK-------------RGITIRLGYADATIRKC 59

Query: 66  --------YETDK------------RFYSHIDCPGHADYVKNMITGATQADGAILVCAA- 104
                   Y T+             R  S +D PGH   +  M++GA   DGAILV AA 
Sbjct: 60  PDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAAN 119

Query: 105 EDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTP 164
           E  P+PQT+EH++    IGI +IV+  NK+D V  +  L+ +  +I++ +K    +++ P
Sbjct: 120 EPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALE-NYEQIKEFVKG-TVAENAP 177

Query: 165 IIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGT- 223
           II  S   AL   N       I AL++A++  IPTP+R LD P  M++  S  +   GT 
Sbjct: 178 IIPVS---ALHKVN-------IDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTP 227

Query: 224 -------VVTGCIKRGRIKAGSDVEI-----IGMGGKK----LKVKCTDVEMFRKKLDEA 267
                  V+ G + +G +K G ++EI     +  GGK     +  K   +    +K++EA
Sbjct: 228 PEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEA 287

Query: 268 IAGDNVGLLLRG------VNRADVPRGRVVCAPGS 296
             G   GL+  G      + +AD   G V   PG+
Sbjct: 288 RPG---GLVGVGTKLDPSLTKADALAGSVAGKPGT 319


>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
           gamma.  eIF-2 functions in the early steps of protein
           synthesis by forming a ternary complex with GTP and
           initiator tRNA.
          Length = 406

 Score =  148 bits (376), Expect = 2e-36
 Identities = 109/330 (33%), Positives = 165/330 (50%), Gaps = 68/330 (20%)

Query: 15  LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI------ATAHVSYET 68
           +  +GHVDHGKTTLT A+T  ++         D+  EE  RGI+I      A  +   E 
Sbjct: 7   IGMVGHVDHGKTTLTKALTGVWT---------DTHSEELKRGISIRLGYADAEIYKCPEC 57

Query: 69  DK--------------------RFYSHIDCPGHADYVKNMITGATQADGAILVCAA-EDG 107
           D                     R  S +D PGH   +  M++GA   DGA+LV AA E  
Sbjct: 58  DGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC 117

Query: 108 PKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIR 167
           P+PQT+EH++    IGI +IV+  NK+D V  ++ L+  E EI++ +K    +++ PII 
Sbjct: 118 PQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYE-EIKEFVKG-TVAENAPIIP 175

Query: 168 GSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGT---- 223
            S   AL   N       I AL++A++  IPTP+R LD P LM++  S  +   GT    
Sbjct: 176 VS---ALHNAN-------IDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEK 225

Query: 224 ----VVTGCIKRGRIKAGSDVEI-----IGMGGK----KLKVKCTDVEMFRKKLDEAIAG 270
               V+ G + +G++K G ++EI     +  GGK     +  + T +     K++EA  G
Sbjct: 226 LKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPG 285

Query: 271 DNVGL---LLRGVNRADVPRGRVVCAPGSI 297
             VG+   L   + +AD   G+VV  PG++
Sbjct: 286 GLVGVGTKLDPALTKADALAGQVVGKPGTL 315


>gnl|CDD|162336 TIGR01394, TypA_BipA, GTP-binding protein TypA/BipA.  This
           bacterial (and Arabidopsis) protein, termed TypA or
           BipA, a GTP-binding protein, is phosphorylated on a
           tyrosine residue under some cellular conditions. Mutants
           show altered regulation of some pathways, but the
           precise function is unknown.
          Length = 594

 Score =  122 bits (307), Expect = 2e-28
 Identities = 86/274 (31%), Positives = 129/274 (47%), Gaps = 32/274 (11%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEYGDI-----DSAPEEKLRGITIATAHVSYETDKRF 72
           I HVDHGKTTL  A+ K  S   +    +     DS   E+ RGITI   + +   +   
Sbjct: 7   IAHVDHGKTTLVDALLKQ-SGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTK 65

Query: 73  YSHIDCPGHADY------VKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISS 126
            + +D PGHAD+      V  M+      DG +L+  A +GP PQTR  +  A ++G+  
Sbjct: 66  INIVDTPGHADFGGEVERVLGMV------DGVLLLVDASEGPMPQTRFVLKKALELGLKP 119

Query: 127 IVVYMNKVD--AVDDDELLDISEYEIRDLLKEHKYSD---DTPIIRGSALCALQGTNKEL 181
           IVV +NK+D  +   DE++D    E+ DL  E    D   D PI+  S        + + 
Sbjct: 120 IVV-INKIDRPSARPDEVVD----EVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD 174

Query: 182 GEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVE 241
             D++  L  A+  H+P P+  LD P  M +      E  G +  G + RG +K G  V 
Sbjct: 175 PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVA 234

Query: 242 IIGMGGKKLKVKCTDVEMF----RKKLDEAIAGD 271
           ++   G     + + +  F    R ++DEA AGD
Sbjct: 235 LMKRDGTIENGRISKLLGFEGLERVEIDEAGAGD 268


>gnl|CDD|165621 PLN00043, PLN00043, elongation factor 1-alpha; Provisional.
          Length = 447

 Score =  120 bits (303), Expect = 4e-28
 Identities = 106/342 (30%), Positives = 157/342 (45%), Gaps = 48/342 (14%)

Query: 8   RNKESLGLSTIGHVDHGKTTLTA-----------AITKYYSEEKKEYGD--------IDS 48
           + K  + +  IGHVD GK+T T             + + + +E  E           +D 
Sbjct: 3   KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDK 62

Query: 49  APEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDG- 107
              E+ RGITI  A   +ET K + + ID PGH D++KNMITG +QAD A+L+  +  G 
Sbjct: 63  LKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG 122

Query: 108 ------PKPQTREHILLARQIGISSIVVYMNKVDAVD---DDELLDISEYEIRDLLKEHK 158
                    QTREH LLA  +G+  ++   NK+DA          D    E+   LK+  
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG 182

Query: 159 YS-DDTPIIRGSALCALQGTNKELGEDSIH-------ALMKAVDTHIPTPQRSLDAPFLM 210
           Y+ D  P +    +   +G N  + E S +        L++A+D  I  P+R  D P  +
Sbjct: 183 YNPDKIPFV---PISGFEGDN--MIERSTNLDWYKGPTLLEALD-QINEPKRPSDKPLRL 236

Query: 211 HIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAG 270
            ++    I G GTV  G ++ G IK G  V     G   L  +   VEM  + L EA+ G
Sbjct: 237 PLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG---LTTEVKSVEMHHESLQEALPG 293

Query: 271 DNVGLLLRGVNRADVPRGRVVCAPGS--IQEYSRFRASVYIL 310
           DNVG  ++ V   D+ RG V         +E + F + V I+
Sbjct: 294 DNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIM 335


>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
           factor; Provisional.
          Length = 614

 Score =  120 bits (302), Expect = 8e-28
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 27/276 (9%)

Query: 15  LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSY-ETDKRFY 73
           ++T GHVDHGKTTL  AIT           + D  PEEK RG+TI   +  + + D R  
Sbjct: 3   IATAGHVDHGKTTLLQAITGV---------NADRLPEEKKRGMTIDLGYAYWPQPDGRVL 53

Query: 74  SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNK 133
             ID PGH  ++ NM+ G    D A+LV A +DG   QTREH+ + +  G   + V + K
Sbjct: 54  GFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTK 113

Query: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193
            D VD+  + ++   +++ +L+E+ ++ +  +   +A               I AL +  
Sbjct: 114 ADRVDEARIAEVRR-QVKAVLREYGFA-EAKLFVTAATEGR----------GIDAL-REH 160

Query: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVK 253
              +P  + +    F + I+ +  ++G G VVTG    G +K G  + + G   K ++V+
Sbjct: 161 LLQLPEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG-VNKPMRVR 219

Query: 254 CTDVEMFRKKLDEAIAGDNVGLLLRG-VNRADVPRG 288
               +   +  ++A AG  + L + G   +  + RG
Sbjct: 220 GLHAQ--NQPTEQAQAGQRIALNIAGDAEKEQINRG 253


>gnl|CDD|185557 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2
           gamma subunit; Provisional.
          Length = 460

 Score =  110 bits (276), Expect = 8e-25
 Identities = 100/338 (29%), Positives = 149/338 (44%), Gaps = 76/338 (22%)

Query: 17  TIGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITI----ATAHV-------- 64
           TIGHV HGK+T+  A++   +   K          EK+R ITI    A A +        
Sbjct: 39  TIGHVAHGKSTVVKALSGVKTVRFKR---------EKVRNITIKLGYANAKIYKCPKCPR 89

Query: 65  -----SYETDK----------------RFYSHIDCPGHADYVKNMITGATQADGAILVCA 103
                SY + K                R  S +DCPGH   +  M+ GA   D A+L+ A
Sbjct: 90  PTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA 149

Query: 104 A-EDGPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDD 162
           A E  P+PQT EH+     + +  I++  NK+D V + +  D  E EIR+ +K    +D+
Sbjct: 150 ANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYE-EIRNFVKG-TIADN 207

Query: 163 TPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGS------- 215
            PII    + A    N       I  +++ + T IP P+R L +P  M +  S       
Sbjct: 208 APII---PISAQLKYN-------IDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPG 257

Query: 216 CGIEG-RGTVVTGCIKRGRIKAGSDVEII-GMGGKKL--KVKCTD-----VEMFRKK--L 264
             IE  +G V  G I +G +K G ++EI  G+  K    +  C       V +F +   L
Sbjct: 258 EDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNEL 317

Query: 265 DEAIAGD--NVGLLLR-GVNRADVPRGRVVCAPGSIQE 299
             A+ G    VG  +   + RAD   G+V+  PG + E
Sbjct: 318 QYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPE 355


>gnl|CDD|104396 PRK10218, PRK10218, GTP-binding protein; Provisional.
          Length = 607

 Score =  103 bits (257), Expect = 1e-22
 Identities = 95/298 (31%), Positives = 141/298 (47%), Gaps = 24/298 (8%)

Query: 15  LSTIGHVDHGKTTLTAAITK----YYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDK 70
           ++ I HVDHGKTTL   + +    + S  + +   +DS   EK RGITI   + + + + 
Sbjct: 8   IAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND 67

Query: 71  RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVY 130
              + +D PGHAD+   +    +  D  +LV  A DGP PQTR     A   G+  IVV 
Sbjct: 68  YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVV- 126

Query: 131 MNKVD--AVDDDELLDISEYEIRDLLKEHKYSD---DTPIIRGSALCALQGTNKELGEDS 185
           +NKVD      D ++D    ++ DL      +D   D PI+  SAL  + G + E   + 
Sbjct: 127 INKVDRPGARPDWVVD----QVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAED 182

Query: 186 IHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDVEIIGM 245
           +  L +A+  H+P P   LD PF M I         G +  G IKRG++K    V II  
Sbjct: 183 MTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242

Query: 246 GGK----KLKVKCTDVEMFRKKLDEAIAGDNVGLLLRG-VNRADVPRGRVVCAPGSIQ 298
            GK    K+      + + R + D A AGD V +   G +N +D      VC   +++
Sbjct: 243 EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISD-----TVCDTQNVE 295


>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
           subunit 1/adenylylsulfate kinase protein; Provisional.
          Length = 632

 Score = 98.8 bits (247), Expect = 2e-21
 Identities = 91/315 (28%), Positives = 141/315 (44%), Gaps = 39/315 (12%)

Query: 9   NKESLGLSTIGHVDHGKTTLT---------------AAITKYYSEEKKEYGDIDSA---- 49
            K  L   T G VD GK+TL                AA+ +   +   +  +ID A    
Sbjct: 21  RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVD 80

Query: 50  --PEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDG 107
               E+ +GITI  A+  + T KR +   D PGH  Y +NM+TGA+ AD AI++  A  G
Sbjct: 81  GLAAEREQGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140

Query: 108 PKPQTREHILLARQIGISSIVVYMNKVDAVD-DDELLDISEYEIRDLLKEHKYSDDTPII 166
              QTR H  +A  +GI  +V+ +NK+D VD D E+ D    + R    +    D T I 
Sbjct: 141 VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFI- 199

Query: 167 RGSALCALQGTNKELGEDSIH-----ALMKAVDT-HIPTPQRSLDAPFLMHIEGSCGIEG 220
               + AL+G N       +      +L++ ++T  I + +   D  F +       ++ 
Sbjct: 200 ---PISALKGDNVVTRSARMPWYEGPSLLEHLETVEIASDRNLKDFRFPVQYVNRPNLDF 256

Query: 221 RGTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGV 280
           RG    G +  G ++ G +V ++   GK  +VK   +      LDEA AG  V L L   
Sbjct: 257 RG--FAGTVASGVVRPGDEVVVLP-SGKTSRVK--RIVTPDGDLDEAFAGQAVTLTLA-- 309

Query: 281 NRADVPRGRVVCAPG 295
           +  D+ RG ++    
Sbjct: 310 DEIDISRGDMLARAD 324


>gnl|CDD|131089 TIGR02034, CysN, sulfate adenylyltransferase, large subunit.
           Homologous to this E.coli activation pathway are nodPQH
           gene products found among members of the Rhizobiaceae
           family. These gene products have been shown to exhibit
           ATP sulfurase and APS kinase activity, yet are involved
           in Nod factor sulfation, and sulfation of other
           macromolecules. With members of the Rhizobiaceae family,
           nodQ often appears as a fusion of cysN (large subunit of
           ATP sulfurase) and cysC (APS kinase).
          Length = 406

 Score = 97.8 bits (244), Expect = 4e-21
 Identities = 93/320 (29%), Positives = 149/320 (46%), Gaps = 43/320 (13%)

Query: 13  LGLSTIGHVDHGKTTLT---------------AAITKYYSEEKKEYGDIDSA------PE 51
           L   T G VD GK+TL                AA+ +   +   + G+ID A        
Sbjct: 1   LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQA 60

Query: 52  EKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQ 111
           E+ +GITI  A+  + TDKR +   D PGH  Y +NM TGA+ AD A+L+  A  G   Q
Sbjct: 61  EREQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ 120

Query: 112 TREHILLARQIGISSIVVYMNKVDAVDDDELL--DISEYEIRDLLKEHKYSDDTPIIRGS 169
           TR H  +A  +GI  +V+ +NK+D VD DE +  +I + +     ++  + D T I    
Sbjct: 121 TRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKK-DYLAFAEQLGFRDVTFI---- 175

Query: 170 ALCALQGTNKELGEDSIH-----ALMKAVDTHIPTPQRSLDAPFLMHIE--GSCGIEGRG 222
            L AL+G N     +S+       L++ ++T +   + + D P    ++      ++ RG
Sbjct: 176 PLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRG 234

Query: 223 TVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIAGDNVGLLLRGVNR 282
               G I  G +  G +V ++   G+  +V    +  F   L++A AG  V L L   + 
Sbjct: 235 --YAGTIASGSVHVGDEVVVLP-SGRSSRV--ARIVTFDGDLEQARAGQAVTLTLD--DE 287

Query: 283 ADVPRGRVVCAPGSIQEYSR 302
            D+ RG ++ A  S  E + 
Sbjct: 288 IDISRGDLLAAADSAPEVAD 307


>gnl|CDD|179943 PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.
          Length = 474

 Score = 83.0 bits (206), Expect = 1e-16
 Identities = 96/327 (29%), Positives = 146/327 (44%), Gaps = 58/327 (17%)

Query: 8   RNKESLGLSTIGHVDHGKTTL-------TAAI-----TKYYSEEKK-----EYGD----I 46
           ++K  L   T G VD GK+TL       T  I        +++ K+     E  D    +
Sbjct: 23  QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLV 82

Query: 47  DSAPEEKLRGITIATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAED 106
           D    E+ +GITI  A+  + T+KR +   D PGH  Y +NM TGA+  D AIL+  A  
Sbjct: 83  DGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARK 142

Query: 107 GPKPQTREHILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIR-DLLKEHKYSDDTPI 165
           G   QTR H  +A  +GI  +VV +NK+D VD  E  ++ E  IR D L   +       
Sbjct: 143 GVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE--EVFE-RIREDYLTFAEQLPGNLD 199

Query: 166 IRGSALCALQGTNKELGEDSI-----HALMKAVDTHIPTPQRSLDAPFLMHIE------- 213
           IR   L AL+G N     +S+       L++ ++T +   +     PF   ++       
Sbjct: 200 IRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNL 258

Query: 214 ---GSCGIEGRGTVVTGCIKRG-RIKAGSDVEIIGMGGKKLKVKCTDVEMFRKKLDEAIA 269
              G       GT+ +G +K G R+K           GK+  V    +  F   L+EA A
Sbjct: 259 DFRGYA-----GTLASGVVKVGDRVKVLPS-------GKESNVA--RIVTFDGDLEEAFA 304

Query: 270 GDNVGLLLRGVNRADVPRGRVVCAPGS 296
           G+ + L+L   +  D+ RG ++ A   
Sbjct: 305 GEAITLVLE--DEIDISRGDLLVAADE 329


>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
          Length = 687

 Score = 78.8 bits (195), Expect = 2e-15
 Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 6   YVRNKESLGLSTIGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGIT 58
            +RN   +G+  + H+D GKTTLT  I  +Y+ +  + G++       D  P+E+ RGIT
Sbjct: 7   QIRN---IGI--LAHIDAGKTTLTERIL-FYTGKIHKMGEVEDGTTVTDWMPQEQERGIT 60

Query: 59  I-ATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHIL 117
           I + A      + R    ID PGH D+   +       DGA++V  A  G +PQT     
Sbjct: 61  IESAATSCDWDNHRINL-IDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR 119

Query: 118 LARQIGISSIVVYMNKVDAVDDD 140
            A + GI   ++++NK+D V  D
Sbjct: 120 QADRYGI-PRLIFINKMDRVGAD 141


>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
          Length = 668

 Score = 76.7 bits (190), Expect = 9e-15
 Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 9/126 (7%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRGITIATAHVSYETDK 70
           +GH   GKTTLT AI  +Y+      G++       D  PEE+ RGI+I +A  + E   
Sbjct: 1   VGHSGAGKTTLTEAIL-FYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG 59

Query: 71  RFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVY 130
              + ID PGH D+   +       DGA++V  A  G +PQT      A + G+  I+  
Sbjct: 60  HKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIF- 118

Query: 131 MNKVDA 136
           +NK+D 
Sbjct: 119 VNKMDR 124


>gnl|CDD|161900 TIGR00487, IF-2, translation initiation factor IF-2.  This model
           discriminates eubacterial (and mitochondrial)
           translation initiation factor 2 (IF-2), encoded by the
           infB gene in bacteria, from similar proteins in the
           Archaea and Eukaryotes. In the bacteria and in
           organelles, the initiator tRNA is charged with
           N-formyl-Met instead of Met. This translation factor
           acts in delivering the initator tRNA to the ribosome. It
           is one of a number of GTP-binding translation factors
           recognized by the pfam model GTP_EFTU.
          Length = 587

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 72/227 (31%), Positives = 99/227 (43%), Gaps = 26/227 (11%)

Query: 17  TI-GHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKRFY 73
           TI GHVDHGKT+L  +I K    +  E G           GIT  I   HV  E D +  
Sbjct: 91  TIMGHVDHGKTSLLDSIRKTKVAQG-EAG-----------GITQHIGAYHVENE-DGKMI 137

Query: 74  SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNK 133
           + +D PGH  +      GA   D  +LV AA+DG  PQT E I  A+   +  I+V +NK
Sbjct: 138 TFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANV-PIIVAINK 196

Query: 134 VDAVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAV 193
           +D  + +      E     L+ E  +  DT  +  SAL    G ++ L  D I  L   V
Sbjct: 197 IDKPEANPDRVKQELSEYGLVPE-DWGGDTIFVPVSALTG-DGIDELL--DMI-LLQSEV 251

Query: 194 DTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKAGSDV 240
           +     P           IE     +GRG V T  ++ G ++ G  V
Sbjct: 252 EELKANPNGQASGVV---IEAQLD-KGRGPVATVLVQSGTLRVGDIV 294


>gnl|CDD|129581 TIGR00490, aEF-2, translation elongation factor aEF-2.  This model
           represents archaeal elongation factor 2, a protein more
           similar to eukaryotic EF-2 than to bacterial EF-G, both
           in sequence similarity and in sharing with eukaryotes
           the property of having a diphthamide (modified His)
           residue at a conserved position. The diphthamide can be
           ADP-ribosylated by diphtheria toxin in the presence of
           NAD.
          Length = 720

 Score = 70.3 bits (172), Expect = 8e-13
 Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 22/163 (13%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLT---AAITKYYSEE---KKEYGDIDSAPEEKL 54
           M + +++RN     +  + H+DHGKTTL+    A     SEE   ++ Y D D   +E+ 
Sbjct: 13  MWKPKFIRN-----IGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDE--QEQE 65

Query: 55  RGITIATAHVS----YETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKP 110
           RGITI  A+VS    YE ++   + ID PGH D+  ++       DGAI+V  A +G  P
Sbjct: 66  RGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMP 125

Query: 111 QTREHILLARQIGISSI--VVYMNKVDAVDDDELLDISEYEIR 151
           QT E +L  RQ    ++  V+++NKVD + ++  L   E + R
Sbjct: 126 QT-ETVL--RQALKENVKPVLFINKVDRLINELKLTPQELQER 165


>gnl|CDD|181029 PRK07560, PRK07560, elongation factor EF-2; Reviewed.
          Length = 731

 Score = 69.5 bits (171), Expect = 1e-12
 Identities = 56/157 (35%), Positives = 76/157 (48%), Gaps = 42/157 (26%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLT------AAITKYYSEEKKEYGD---IDSAPE 51
           M     +RN     +  I H+DHGKTTL+      A +    SEE    G+   +D   E
Sbjct: 14  MKNPEQIRN-----IGIIAHIDHGKTTLSDNLLAGAGMI---SEELA--GEQLALDFDEE 63

Query: 52  EKLRGITIATAHVS----YETDKRFYSHIDCPGHADYVKNMITGATQA-DGAILVCAAED 106
           E+ RGITI  A+VS    YE  +   + ID PGH D+    +T A +A DGAI+V  A +
Sbjct: 64  EQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF-GGDVTRAMRAVDGAIVVVDAVE 122

Query: 107 GPKPQT--------REHILLARQIGISSIVVYMNKVD 135
           G  PQT        RE +           V+++NKVD
Sbjct: 123 GVMPQTETVLRQALRERV---------KPVLFINKVD 150



 Score = 29.1 bits (66), Expect = 2.1
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 7/78 (8%)

Query: 222 GTVVTGCIKRGRIKAGSDVEIIGMGGKKLKVKCTDVEM--FRKKLDEAIAGDNVGLLLRG 279
           G V TG +  G ++ G +V ++G   K  +V+   + M   R++++E  AG+   +   G
Sbjct: 305 GEVATGRVFSGTLRKGQEVYLVGAKKKN-RVQQVGIYMGPEREEVEEIPAGNIAAVT--G 361

Query: 280 VNRADVPRGRVVCAPGSI 297
           +  A    G  V +   +
Sbjct: 362 LKDARA--GETVVSVEDM 377


>gnl|CDD|130460 TIGR01393, lepA, GTP-binding protein LepA.  LepA (GUF1 in
           Saccaromyces) is a GTP-binding membrane protein related
           to EF-G and EF-Tu. Two types of phylogenetic tree,
           rooted by other GTP-binding proteins, suggest that
           eukaryotic homologs (including GUF1 of yeast) originated
           within the bacterial LepA family. The function is
           unknown.
          Length = 595

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 41/287 (14%)

Query: 7   VRNKESLGLSTIGHVDHGKTTLTAAI---TKYYSEEKKEYGDIDSAPEEKLRGITIATAH 63
           +RN      S I H+DHGK+TL   +   T   SE +     +DS   E+ RGITI    
Sbjct: 3   IRN-----FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQA 57

Query: 64  V--SY-ETDKRFY--SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL 118
           V  +Y   D   Y  + ID PGH D+   +       +GA+L+  A  G + QT  ++ L
Sbjct: 58  VRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL 117

Query: 119 ARQIGISSIVVYMNKVD--AVDDDELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQG 176
           A +  +  I V +NK+D  + D + +      EI +++      D +  I  S   A  G
Sbjct: 118 ALENDLEIIPV-INKIDLPSADPERVKK----EIEEVIG----LDASEAILAS---AKTG 165

Query: 177 TNKELGEDSIHALMKAVDTHIPTPQRSLDAPFLMHIEGSCGIEGRGTVVTGCIKRGRIKA 236
                    I  +++A+   +P P+   DAP    I  S     RG V    +  G IK 
Sbjct: 166 IG-------IEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKP 218

Query: 237 GSDVEIIGMGGKKLKVKCTDVEMFRKKL---DEAIAGDNVGLLLRGV 280
           G  +  +   GK+ +V   +V +F  KL   DE  AG+ VG ++ G+
Sbjct: 219 GDKIRFMST-GKEYEV--DEVGVFTPKLTKTDELSAGE-VGYIIAGI 261


>gnl|CDD|185604 PTZ00416, PTZ00416, elongation factor 2; Provisional.
          Length = 836

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 56/157 (35%), Positives = 78/157 (49%), Gaps = 36/157 (22%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLT------AAITKYYSEEKKEYGD---IDSAPE 51
           M     +RN     +S I HVDHGK+TLT      A I        K  GD    D+  +
Sbjct: 13  MDNPDQIRN-----MSVIAHVDHGKSTLTDSLVCKAGIIS-----SKNAGDARFTDTRAD 62

Query: 52  EKLRGITIATAHVS--YETD------KRFY--SHIDCPGHADYVKNMITGATQ-ADGAIL 100
           E+ RGITI +  +S  YE D      K+ +  + ID PGH D+  + +T A +  DGA++
Sbjct: 63  EQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDF-SSEVTAALRVTDGALV 121

Query: 101 VCAAEDGPKPQTREHILLARQIGISSI--VVYMNKVD 135
           V    +G   QT E +L  RQ     I  V+++NKVD
Sbjct: 122 VVDCVEGVCVQT-ETVL--RQALQERIRPVLFINKVD 155


>gnl|CDD|180006 PRK05306, infB, translation initiation factor IF-2; Validated.
          Length = 787

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 61/178 (34%), Positives = 79/178 (44%), Gaps = 48/178 (26%)

Query: 17  TI-GHVDHGKTTLTAAI--TKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDKR 71
           TI GHVDHGKT+L  AI  T   +    E G           GIT  I    V  ET+  
Sbjct: 294 TIMGHVDHGKTSLLDAIRKTNVAA---GEAG-----------GITQHIGAYQV--ETNGG 337

Query: 72  FYSHIDCPGHADYVKNMIT-----GATQADGAILVCAAEDGPKPQTREHILLARQIGISS 126
             + +D PGH  +     T     GA   D  +LV AA+DG  PQT E I  A+  G+  
Sbjct: 338 KITFLDTPGHEAF-----TAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGV-P 391

Query: 127 IVVYMNKVDAVDDD------ELLDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTN 178
           I+V +NK+D    +      EL   SEY    L+ E ++  DT  +  S   A  G  
Sbjct: 392 IIVAINKIDKPGANPDRVKQEL---SEY---GLVPE-EWGGDTIFVPVS---AKTGEG 439


>gnl|CDD|129594 TIGR00503, prfC, peptide chain release factor 3.  This translation
           releasing factor, RF-3 (prfC) was originally described
           as stop codon-independent, in contrast to peptide chain
           release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and
           RF-2 are closely related to each other, while RF-3 is
           similar to elongation factors EF-Tu and EF-G; RF-1 is
           active at UAA and UAG and RF-2 is active at UAA and UGA.
           More recently, RF-3 was shown to be active primarily at
           UGA stop codons in E. coli. All bacteria and organelles
           have RF-1. The Mycoplasmas and organelles, which
           translate UGA as Trp rather than as a stop codon, lack
           RF-2. RF-3, in contrast, seems to be rare among bacteria
           and is found so far only in Escherichia coli and some
           other gamma subdivision Proteobacteria, in Synechocystis
           PCC6803, and in Staphylococcus aureus.
          Length = 527

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEYGDI-----------DSAPEEKLRGITIATAHVSY 66
           I H D GKTT+T  +   Y    +  G +           D    EK RGI+I T+ + +
Sbjct: 17  ISHPDAGKTTITEKVL-LYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF 75

Query: 67  ETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISS 126
                  + +D PGH D+ ++     T  D  ++V  A  G + +TR+ + + R +  + 
Sbjct: 76  PYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTR-LRDTP 134

Query: 127 IVVYMNKVD--AVDDDELLDISEYEIRDLLKEHKYSDDTPI 165
           I  +MNK+D    D  ELLD    E+ + LK +      PI
Sbjct: 135 IFTFMNKLDRDIRDPLELLD----EVENELKINCAPITWPI 171


>gnl|CDD|129575 TIGR00484, EF-G, translation elongation factor EF-G.  After peptide
           bond formation, this elongation factor of bacteria and
           organelles catalyzes the translocation of the tRNA-mRNA
           complex, with its attached nascent polypeptide chain,
           from the A-site to the P-site of the ribosome. Every
           completed bacterial genome has at least one copy, but
           some species have additional EF-G-like proteins. The
           closest homolog to canonical (e.g. E. coli) EF-G in the
           spirochetes clusters as if it is derived from
           mitochondrial forms, while a more distant second copy is
           also present. Synechocystis PCC6803 has a few proteins
           more closely related to EF-G than to any other
           characterized protein. Two of these resemble E. coli
           EF-G more closely than does the best match from the
           spirochetes; it may be that both function as authentic
           EF-G.
          Length = 689

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%)

Query: 20  HVDHGKTTLTAAITKYYSEEKK--EYGD----IDSAPEEKLRGITIATAHVSYETDKRFY 73
           H+D GKTT T  I  Y     K  E  D    +D   +EK RGITI +A  +        
Sbjct: 18  HIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRI 77

Query: 74  SHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNK 133
           + ID PGH D+   +       DGA+ V  A  G +PQ+      A +  +  I  ++NK
Sbjct: 78  NIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNK 136

Query: 134 VD 135
           +D
Sbjct: 137 MD 138


>gnl|CDD|177730 PLN00116, PLN00116, translation elongation factor EF-2 subunit;
           Provisional.
          Length = 843

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 50/157 (31%), Positives = 68/157 (43%), Gaps = 30/157 (19%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTLT----AAITKYYSEEKKEYGDIDSAPEEKLRG 56
           M +K  +RN     +S I HVDHGK+TLT    AA      E   +    D+  +E  RG
Sbjct: 13  MDKKHNIRN-----MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERG 67

Query: 57  ITIATAHVS--YETDKRFYSH--------------IDCPGHADYVKNMITGATQADGAIL 100
           ITI +  +S  YE                      ID PGH D+   +       DGA++
Sbjct: 68  ITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALV 127

Query: 101 VCAAEDGPKPQTREHILLARQIGISSI--VVYMNKVD 135
           V    +G   QT E +L  RQ     I  V+ +NK+D
Sbjct: 128 VVDCIEGVCVQT-ETVL--RQALGERIRPVLTVNKMD 161


>gnl|CDD|129582 TIGR00491, aIF-2, translation initiation factor aIF-2/yIF-2.  This
           model describes archaeal and eukaryotic orthologs of
           bacterial IF-2. Like IF-2, it helps convey the initiator
           tRNA to the ribosome, although the initiator is
           N-formyl-Met in bacteria and Met here. This protein is
           not closely related to the subunits of eIF-2 of
           eukaryotes, which is also involved in the initiation of
           translation. The aIF-2 of Methanococcus jannaschii
           contains a large intein interrupting a region of very
           strongly conserved sequence very near the amino end;
           this model does not correctly align the sequences from
           Methanococcus jannaschii and Pyrococcus horikoshii in
           this region.
          Length = 590

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 13/130 (10%)

Query: 15  LSTIGHVDHGKTTLTAAITKYYSEEKKEYGDIDS---APE------EKLRGITIATAHVS 65
           +S +GHVDHGKTTL   I    +  K+E G I     A E      E + G  +    + 
Sbjct: 7   VSVLGHVDHGKTTLLDKIRGS-AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIR 65

Query: 66  YETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGIS 125
            +     +  ID PGH  +      G   AD AIL+    +G KPQT+E + + R    +
Sbjct: 66  LKIPGLLF--IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYK-T 122

Query: 126 SIVVYMNKVD 135
             VV  NK+D
Sbjct: 123 PFVVAANKID 132


>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain.  This model
           recognizes a large number of small GTP-binding proteins
           and related domains in larger proteins. Note that the
           alpha chains of heterotrimeric G proteins are larger
           proteins in which the NKXD motif is separated from the
           GxxxxGK[ST] motif (P-loop) by a long insert and are not
           easily detected by this model.
          Length = 161

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 23/134 (17%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEYG--DIDSAPEEKLRGITIATAHVSYETDKRFYSH 75
           +G  + GK+TL   +       + + G          +  G T    ++           
Sbjct: 7   VGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTY-KFNL----------- 54

Query: 76  IDCPGHADY---VKNMITGATQA----DGAILVCAAEDGPKPQTREHILLARQIGISSIV 128
           +D  G  DY    +        +    D  ILV   E+  + QT+E I  A       I+
Sbjct: 55  LDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE--SNVPII 112

Query: 129 VYMNKVDAVDDDEL 142
           +  NK+D  D    
Sbjct: 113 LVGNKIDLRDAKLK 126


>gnl|CDD|180078 PRK05433, PRK05433, GTP-binding protein LepA; Provisional.
          Length = 600

 Score = 46.2 bits (111), Expect = 2e-05
 Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 52/226 (23%)

Query: 1   MVEKRYVRNKESLGLSTIGHVDHGKTTL-------TAAITKYYSEEKKEYGDIDSAPEEK 53
           M++ + +RN      S I H+DHGK+TL       T  +++   E K +   +DS   E+
Sbjct: 1   MMDMKNIRN-----FSIIAHIDHGKSTLADRLIELTGTLSE--REMKAQV--LDSMDLER 51

Query: 54  LRGITI--ATAHVSYE-TDKRFYS-H-IDCPGHADY---VKNMITGATQA-DGAILVCAA 104
            RGITI      ++Y+  D   Y  + ID PGH D+   V      +  A +GA+LV  A
Sbjct: 52  ERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVSR----SLAACEGALLVVDA 107

Query: 105 EDGPKPQTREHILLARQIGISSIVVYMNKVD--AVDDDELLDISEYEIRDLLKEHKYSDD 162
             G + QT  ++ LA +  +  I V +NK+D  A D + +      EI D++      D 
Sbjct: 108 SQGVEAQTLANVYLALENDLEIIPV-LNKIDLPAADPERVKQ----EIEDVIGI----DA 158

Query: 163 TPIIRGSALCALQGTNKE-LGEDSIHALMKAVDTHIPTPQRSLDAP 207
           +  +  SA        K  +G   I  +++A+   IP P+   DAP
Sbjct: 159 SDAVLVSA--------KTGIG---IEEVLEAIVERIPPPKGDPDAP 193


>gnl|CDD|183712 PRK12739, PRK12739, elongation factor G; Reviewed.
          Length = 691

 Score = 44.4 bits (106), Expect = 5e-05
 Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 22/141 (15%)

Query: 6   YVRNKESLGLSTIG---HVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLR 55
             RN        IG   H+D GKTT T  I  YY+ +  + G++       D   +E+ R
Sbjct: 7   KTRN--------IGIMAHIDAGKTTTTERIL-YYTGKSHKIGEVHDGAATMDWMEQEQER 57

Query: 56  GITIATAHVSYE-TDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTRE 114
           GITI +A  +      R  + ID PGH D+   +       DGA+ V  A  G +PQ+  
Sbjct: 58  GITITSAATTCFWKGHRI-NIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET 116

Query: 115 HILLARQIGISSIVVYMNKVD 135
               A + G+  I V++NK+D
Sbjct: 117 VWRQADKYGVPRI-VFVNKMD 136


>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA.  EngA
           (YfgK, Der) is a ribosome-associated essential GTPase
           with a duplication of its GTP-binding domain. It is
           broadly to universally distributed among bacteria. It
           appears to function in ribosome biogenesis or stability.
          Length = 429

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 94  QADGAILVCAAEDGPKPQTREHIL-LARQIGISSIVVYMNKVDAVDDDELLDISEYEIRD 152
           +AD  +LV  A +G   Q    I  L  + G + ++V +NK D V D++  +  + E+R 
Sbjct: 254 RADVVLLVLDATEGITEQD-LRIAGLILEAGKALVIV-VNKWDLVKDEKTREEFKKELRR 311

Query: 153 LLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALMKAVDTHIPTPQ 201
            L    + D  PI+  SAL   QG +K L  D+I  + +  +  I T +
Sbjct: 312 KL---PFLDFAPIVFISALTG-QGVDKLL--DAIDEVYENANRRISTSK 354


>gnl|CDD|179704 PRK04004, PRK04004, translation initiation factor IF-2; Validated.
          Length = 586

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 43/146 (29%), Positives = 55/146 (37%), Gaps = 49/146 (33%)

Query: 19  GHVDHGKTTL------TAAITKYYSEEKKEYGDIDSAPEEKLRGIT--IATAHVSYETDK 70
           GHVDHGKTTL      TA          KE G           GIT  I    V  +  +
Sbjct: 13  GHVDHGKTTLLDKIRGTAVA-------AKEAG-----------GITQHIGATEVPIDVIE 54

Query: 71  R-------------------FYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQ 111
           +                   F   ID PGH  +      G   AD AILV    +G +PQ
Sbjct: 55  KIAGPLKKPLPIKLKIPGLLF---IDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQ 111

Query: 112 TREHILLARQIGISSIVVYMNKVDAV 137
           T E I + ++     +V   NK+D +
Sbjct: 112 TIEAINILKRRKTPFVVA-ANKIDRI 136


>gnl|CDD|184848 PRK14845, PRK14845, translation initiation factor IF-2;
           Provisional.
          Length = 1049

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 76  IDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILLARQIGISSIVVYMNKVD 135
           ID PGH  +      G + AD A+LV    +G KPQT E I + RQ   +  VV  NK+D
Sbjct: 531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYK-TPFVVAANKID 589


>gnl|CDD|179105 PRK00741, prfC, peptide chain release factor 3; Provisional.
          Length = 526

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 35/159 (22%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEY--GDIDSAPE-----------------EKLRGIT 58
           I H D GKTTLT         EK     G I  A                   EK RGI+
Sbjct: 16  ISHPDAGKTTLT---------EKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGIS 66

Query: 59  IATAHVSYETDKRFYSHIDCPGHADYVKNMITGATQADGAILVCAAEDGPKPQTREHILL 118
           + ++ + +       + +D PGH D+ ++     T  D A++V  A  G +PQTR+ + +
Sbjct: 67  VTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEV 126

Query: 119 ARQIGISSIVVYMNKVDAVDDD--ELLDISEYEIRDLLK 155
            R      I  ++NK+D    +  ELLD    EI ++L 
Sbjct: 127 CRLRDT-PIFTFINKLDRDGREPLELLD----EIEEVLG 160


>gnl|CDD|178789 PRK00007, PRK00007, elongation factor G; Reviewed.
          Length = 693

 Score = 38.6 bits (91), Expect = 0.003
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 39/126 (30%)

Query: 7   VRNKESLGLSTIG---HVDHGKTTLTAAITKYYSEEKKEYGDI-------DSAPEEKLRG 56
            RN        IG   H+D GKTT T  I  +Y+    + G++       D   +E+ RG
Sbjct: 10  YRN--------IGIMAHIDAGKTTTTERIL-FYTGVNHKIGEVHDGAATMDWMEQEQERG 60

Query: 57  ITIATAHVS-YETDKRFYSHIDCPGHADY---------VKNMITGATQADGAILVCAAED 106
           ITI +A  + +  D R  + ID PGH D+         V          DGA+ V  A  
Sbjct: 61  ITITSAATTCFWKDHRI-NIIDTPGHVDFTIEVERSLRV---------LDGAVAVFDAVG 110

Query: 107 GPKPQT 112
           G +PQ+
Sbjct: 111 GVEPQS 116


>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
          Length = 435

 Score = 38.1 bits (90), Expect = 0.004
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 14/110 (12%)

Query: 95  ADGAILVCAAEDGPKPQTREHIL-LARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDL 153
           AD  +LV  A +G   Q    I  LA + G + ++V +NK D VD+  + +  + E+R  
Sbjct: 256 ADVVLLVIDATEGITEQD-LRIAGLALEAGRALVIV-VNKWDLVDEKTMEEF-KKELRRR 312

Query: 154 LKEHKYSDDTPIIRGSALCALQGTNKELGE--DSIHALMKAVDTHIPTPQ 201
           L    + D  PI+  SAL     T + + +  ++I    +  +  I T  
Sbjct: 313 L---PFLDYAPIVFISAL-----TGQGVDKLLEAIDEAYENANRRISTSV 354


>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP.  This
           protein is found within operons which code for
           polyhedral organelles containing the enzyme ethanolamine
           ammonia lyase. The function of this gene is unknown,
           although the presence of an N-terminal GxxGxGK motif
           implies a GTP-binding site.
          Length = 142

 Score = 33.2 bits (76), Expect = 0.11
 Identities = 34/140 (24%), Positives = 48/140 (34%), Gaps = 36/140 (25%)

Query: 18  IGHVDHGKTTLTAAITKYYSEEKKEYGDIDSAPEEKLRGITIATAHVSYETDKRFYSHID 77
           IG V  GKTTLT A+       KK                   T  V Y         ID
Sbjct: 6   IGSVGCGKTTLTQALQGEEILYKK-------------------TQAVEY-----NDGAID 41

Query: 78  CPG----HADYVKNMITGATQADGAILVCAAEDG--PKPQTREHILLARQIGISSIVVYM 131
            PG    +      +I  A  AD   LV +A D     P     I +   IG+ +     
Sbjct: 42  TPGEYVENRRLYSALIVTAADADVIALVQSATDPESRFPPGFASIFVKPVIGLVT----- 96

Query: 132 NKVDAVDDDELLDISEYEIR 151
            K+D  + D  ++ ++  + 
Sbjct: 97  -KIDLAEADVDIERAKELLE 115


>gnl|CDD|162669 TIGR02033, D-hydantoinase, D-hydantoinase.  This model represents
           the D-hydantoinase (dihydropyrimidinase) which primarily
           converts 5,6-dihydrouracil to 3-ureidopropanoate but
           also acts on dihydrothymine and hydantoin. The enzyme is
           a metalloenzyme.
          Length = 454

 Score = 31.6 bits (72), Expect = 0.36
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 113 REHILLARQIGISSIVVYM--NKVDAVDDDELLDI 145
            EHI    + GI+S  V+M    +  VDD+EL +I
Sbjct: 134 EEHIPELVEEGITSFKVFMAYKNLLMVDDEELFEI 168


>gnl|CDD|178854 PRK00089, era, GTPase Era; Reviewed.
          Length = 292

 Score = 28.9 bits (66), Expect = 2.6
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 14/108 (12%)

Query: 85  VKNMITGATQADGAILVCA-AEDGPKPQTREHILLARQIGISSIVVYMNKVDAVDD-DEL 142
            K   +     D  +L    A++   P     +   +++    I+V +NK+D V D +EL
Sbjct: 75  NKAAWSSLKDVD-LVLFVVDADEKIGPGDEFILEKLKKVKTPVILV-LNKIDLVKDKEEL 132

Query: 143 LDISEYEIRDLLKEHKYSDDTPIIRGSALCALQGTNKELGEDSIHALM 190
           L +    + +L +   +++  PI       AL+G N +   D I   +
Sbjct: 133 LPL----LEELSELMDFAEIVPI------SALKGDNVDELLDVIAKYL 170


>gnl|CDD|181695 PRK09201, PRK09201, amidase; Provisional.
          Length = 465

 Score = 28.8 bits (65), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 297 IQEYSRFRASVYILTASEGG 316
           + E +R RA+ +I+TASEGG
Sbjct: 297 LPEAARARAAAFIITASEGG 316


>gnl|CDD|180097 PRK05458, PRK05458, guanosine 5'-monophosphate oxidoreductase;
           Provisional.
          Length = 326

 Score = 27.6 bits (62), Expect = 5.0
 Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 18/52 (34%)

Query: 40  KKEYGDIDSAPEEKLRG--ITIATAHVSYETDKRFYSHIDCPGHADYVKNMI 89
             EY  +D    E L    ITI  AH                GH+D V NMI
Sbjct: 96  DDEYDFVDQLAAEGLTPEYITIDIAH----------------GHSDSVINMI 131


>gnl|CDD|179657 PRK03826, PRK03826, 5'-nucleotidase; Provisional.
          Length = 195

 Score = 27.3 bits (61), Expect = 7.0
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 33  TKYYSEE-KKEYGDIDSAPEEKL 54
            KY++ E   EY  I+   E+KL
Sbjct: 81  VKYFNPEIAHEYKKIEKIAEQKL 103


>gnl|CDD|162813 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
           Members of this family, all eukaryotic, are part of the
           group II chaperonin complex called CCT (chaperonin
           containing TCP-1) or TRiC. The archaeal equivalent group
           II chaperonin is often called the thermosome. Both are
           somewhat related to the group I chaperonin of bacterial,
           GroEL/GroES. This family consists exclusively of the CCT
           zeta chain (part of a paralogous family) from animals,
           plants, fungi, and other eukaryotes.
          Length = 531

 Score = 27.0 bits (60), Expect = 7.8
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 13/64 (20%)

Query: 112 TREHILLARQIGISSIVVYMNKVDAV----DDDELLDISEYEIRDLLKEHKYSDDTPIIR 167
           T+  I LA Q+  + IVV     DAV     D E +D+   EI ++  +HK + DT +IR
Sbjct: 158 TKLPIDLADQL--TEIVV-----DAVLAIKKDGEQIDLFMVEIMEM--KHKSATDTTLIR 208

Query: 168 GSAL 171
           G  L
Sbjct: 209 GLVL 212


>gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated.
          Length = 268

 Score = 26.9 bits (60), Expect = 8.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 4   KRYVRN-----KESLGLSTIGHVDHGKTTLTAAITKYYSEE 39
           ++YV+      KE++GL   G V  GKT L A I     E+
Sbjct: 101 RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK 141


>gnl|CDD|162985 TIGR02715, amido_AtzE, amidohydrolase, AtzE family.  Members of
           this protein family are aminohydrolases related to, but
           distinct from, glutamyl-tRNA(Gln) amidotransferase
           subunit A. The best characterized member is the biuret
           hydrolase of Pseudomonas sp. ADP, which hydrolyzes
           ammonia from the three-nitrogen compound biuret to yield
           allophanate. Allophanate is also an intermediate in urea
           degradation by the urea carboxylase/allophanate
           hydrolase pathway, an alternative to urease.
          Length = 452

 Score = 27.1 bits (60), Expect = 9.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 5/34 (14%)

Query: 288 GRVVCAPGS-----IQEYSRFRASVYILTASEGG 316
           GRV  A G+     + +  R RA+ +++TASEGG
Sbjct: 276 GRVAKALGATTIVELPDAERARAAAFVITASEGG 309


>gnl|CDD|183988 PRK13344, spxA, transcriptional regulator Spx; Reviewed.
          Length = 132

 Score = 26.9 bits (59), Expect = 9.7
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 107 GPKPQTREH---ILLARQIGISSIVVYMNKVDAVDDDELLDISEYEIRDLLKEHKYSDDT 163
           G +P T+E    IL   + GI SIV   N+     D ++ ++S  E+ DL++E+     +
Sbjct: 33  GKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDIEELSVNEVIDLIQENPRILKS 92

Query: 164 PII 166
           PI+
Sbjct: 93  PIL 95


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,520,812
Number of extensions: 432539
Number of successful extensions: 1074
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 69
Length of query: 392
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 297
Effective length of database: 3,941,713
Effective search space: 1170688761
Effective search space used: 1170688761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)