HHsearch alignment for GI: 254780264 and conserved domain: COG0486
>COG0486 ThdF Predicted GTPase [General function prediction only].
Probab=98.47 E-value=5.2e-06 Score=57.34 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=80.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC--CCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCC
Q ss_conf 799986878897789999999808732--142201795613780889870853764079999607778713899981798
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSH--KIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPG 89 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~--~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPG 89 (701)
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTR------Dv----------ie---e~i~i-----~G~pv~l~DTAG 274 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTR------DV----------IE---EDINL-----NGIPVRLVDTAG 274 (454)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCC------CE----------EE---EEEEE-----CCEEEEEEECCC
T ss_conf 49998799886799999886678667428999741------03----------78---99998-----988999985677
Q ss_pred CCCCHHHH--------HHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
Q ss_conf 75528999--------9999860456999955888883479999999873997899981767658755
Q gi|254780264|r 90 HVDFTMEV--------ERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADF 149 (701)
Q Consensus 90 H~DF~~Ev--------~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~ 149 (701)
T Consensus 275 iRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCC
T ss_conf 666734899999999999998599899997088777601177887-2436897799996021156432