HHsearch alignment for GI: 254780264 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=97.36 E-value=0.00058 Score=44.16 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=65.9
Q ss_pred CCCCHHHHHHHHH---HHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEE------EEE---ECCCCCCCEEEEEEE
Q ss_conf 7889778999999---9808732142201795613780889870853764079------999---607778713899981
Q gi|254780264|r 19 IDAGKTTTTERIL---YYAGKSHKIGEVHDGSATMDWMEQEQERGITITSAST------TVF---WPGRDGGQKKLTIID 86 (701)
Q Consensus 19 vd~GKTTL~d~LL---~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~------sl~---~~~~~~~~~~iNlID 86 (701)
T Consensus 11 GG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~~D~VIID 90 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALAD 90 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 98769999999999999789959999689986889999876525898877523405652578999988753699889981
Q ss_pred CCCCCCCHHHHHHHHHHHCEEEEEEE-----CCCCCCHHHHHHHHH---HHHCCCCEEEEECCCCC
Q ss_conf 79875528999999986045699995-----588888347999999---98739978999817676
Q gi|254780264|r 87 TPGHVDFTMEVERSIRVTDGAIALLD-----SNAGVEPQTETVWRQ---ADKYSVPRVIFCNKMDK 144 (701)
Q Consensus 87 TPGH~DF~~Ev~~aL~~~DgailvVD-----a~eGv~~qT~~vlr~---~~~~~lp~ilvINKiDr 144 (701)
T Consensus 91 tpg~~s--~~~~~Ai~~ADLVLIP~qPSp~D~~~a--~~tv~~i~~~~~~~~~~ip~~vlltRv~a 152 (231)
T PRK13849 91 THGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEA--LSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCCC--HHHHHHHHHCCEEEECCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 899775--899999997898997799986679999--99999999999972878865666540504