HHsearch alignment for GI: 254780264 and conserved domain: TIGR00231
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.49 E-value=7.2e-14 Score=107.76 Aligned_cols=130 Identities=35% Similarity=0.521 Sum_probs=114.1
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
T Consensus 2 ~~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~-~~~-~~w-~-----~~~~~~d~~ 72 (186)
T TIGR00231 2 KDIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTD-GTTRDYVTESIEEDGKTIT-GAT-FQW-G-----YKFNLLDTP 72 (186)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCC-CCCHHHHEEEEEECCEEEE-EEE-EEC-C-----EEEEEEECC
T ss_conf 750589973477660455544541012001023233-3200000011345580234-343-102-4-----278986257
Q ss_pred C---CCCC-------HHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 8---7552-------899999998604569999558888834799999998739978999817676587
Q gi|254780264|r 89 G---HVDF-------TMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 89 G---H~DF-------~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~ 147 (701)
T Consensus 73 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (186)
T TIGR00231 73 GLHRQEDYDALRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDE 141 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 711355554454332234454443333333222111001025677875322127416998513365546