HHsearch alignment for GI: 254780264 and conserved domain: TIGR02729
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=96.58 E-value=0.025 Score=33.72 Aligned_cols=110 Identities=24% Similarity=0.336 Sum_probs=69.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCC---EEEEEEE
Q ss_conf 5279998687889778999999980873214220179561378088987085376407999960777871---3899981
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQ---KKLTIID 86 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~---~~iNlID 86 (701)
T Consensus 158 lADVGLvGfPNAGKSTLLs~~---S~AkPK---iAd---YPFT---------TL~P~LGvv~~~~----~~Y~~~fviAD 215 (296)
T TIGR02729 158 LADVGLVGFPNAGKSTLLSAI---SNAKPK---IAD---YPFT---------TLEPNLGVVRVDD----NKYERSFVIAD 215 (296)
T ss_pred EEEEEEECCCCCCHHHHHHHH---HCCCCE---ECC---CCCC---------CCCCCEEEEEECC----CCEEEEEEEEE
T ss_conf 620210357887468888887---627882---238---7874---------5653112898748----74168899985
Q ss_pred CCCCC-----------CCHHHHHHHHHHHCEEEEEEECCCC---------CCHHHHHHHHHHHHC-----CCCEEEEECC
Q ss_conf 79875-----------5289999999860456999955888---------883479999999873-----9978999817
Q gi|254780264|r 87 TPGHV-----------DFTMEVERSIRVTDGAIALLDSNAG---------VEPQTETVWRQADKY-----SVPRVIFCNK 141 (701)
Q Consensus 87 TPGH~-----------DF~~Ev~~aL~~~DgailvVDa~eG---------v~~qT~~vlr~~~~~-----~lp~ilvINK 141 (701)
T Consensus 216 IPGLIEGAs~G~GLG~~FLKHIERt~----~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK 291 (296)
T TIGR02729 216 IPGLIEGASEGKGLGHKFLKHIERTR----LLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNK 291 (296)
T ss_pred CCCCHHHHHCCCCCCHHHHHHHHHEE----EEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEE
T ss_conf 68615666268875335545752026----68879806875342428988899999999999750873627807999860
Q ss_pred CCCC
Q ss_conf 6765
Q gi|254780264|r 142 MDKM 145 (701)
Q Consensus 142 iDr~ 145 (701)
T Consensus 292 ~Dl~ 295 (296)
T TIGR02729 292 IDLL 295 (296)
T ss_pred CCCC
T ss_conf 6778