HHsearch alignment for GI: 254780264 and conserved domain: TIGR03156

>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.52  E-value=8.8e-07  Score=62.28  Aligned_cols=114  Identities=21%  Similarity=0.292  Sum_probs=63.5

Q ss_pred             EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf             527999868788977899999998087321422017-9561378088987085376407999960777871389998179
Q gi|254780264|r   10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP   88 (701)
Q Consensus        10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP   88 (701)
T Consensus       189 ~p~ValVGYTNAGKSTL~n~Lt---~~~~---~~~d~lFa-------------TLd~t~r~~~l~~----~~~~ll~DTV  245 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALT---GADV---YAADQLFA-------------TLDPTTRRLDLPD----GGEVLLTDTV  245 (351)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH---HCCC---CCCCCCEE-------------ECCCCCCEEECCC----CCEEEEEECC
T ss_conf             9769996678877899999985---1776---41034313-------------5367320488799----9769998150


Q ss_pred             CCCCCHH-HH-------HHHHHHHCEEEEEEECCC-CCCHHH---HHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             8755289-99-------999986045699995588-888347---9999999873997899981767658
Q gi|254780264|r   89 GHVDFTM-EV-------ERSIRVTDGAIALLDSNA-GVEPQT---ETVWRQADKYSVPRVIFCNKMDKMG  146 (701)
Q Consensus        89 GH~DF~~-Ev-------~~aL~~~DgailvVDa~e-Gv~~qT---~~vlr~~~~~~lp~ilvINKiDr~~  146 (701)
T Consensus       246 GFI~~LP~~Li~aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~  315 (351)
T TIGR03156       246 GFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLD  315 (351)
T ss_pred             CHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCC
T ss_conf             0563088679999999999998598999980588847899999999999976999998899996701589