HHsearch alignment for GI: 254780264 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.52 E-value=8.8e-07 Score=62.28 Aligned_cols=114 Identities=21% Similarity=0.292 Sum_probs=63.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECC-CCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 527999868788977899999998087321422017-9561378088987085376407999960777871389998179
Q gi|254780264|r 10 SRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHD-GSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 10 iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~-g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
T Consensus 189 ~p~ValVGYTNAGKSTL~n~Lt---~~~~---~~~d~lFa-------------TLd~t~r~~~l~~----~~~~ll~DTV 245 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALT---GADV---YAADQLFA-------------TLDPTTRRLDLPD----GGEVLLTDTV 245 (351)
T ss_pred CCEEEEECCCCCCHHHHHHHHH---HCCC---CCCCCCEE-------------ECCCCCCEEECCC----CCEEEEEECC
T ss_conf 9769996678877899999985---1776---41034313-------------5367320488799----9769998150
Q ss_pred CCCCCHH-HH-------HHHHHHHCEEEEEEECCC-CCCHHH---HHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 8755289-99-------999986045699995588-888347---9999999873997899981767658
Q gi|254780264|r 89 GHVDFTM-EV-------ERSIRVTDGAIALLDSNA-GVEPQT---ETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 89 GH~DF~~-Ev-------~~aL~~~DgailvVDa~e-Gv~~qT---~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
T Consensus 246 GFI~~LP~~Li~aF~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~ 315 (351)
T TIGR03156 246 GFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCC
T ss_conf 0563088679999999999998598999980588847899999999999976999998899996701589