HHsearch alignment for GI: 254780264 and conserved domain: cd00881
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=100.00 E-value=0 Score=333.97 Aligned_cols=188 Identities=41% Similarity=0.687 Sum_probs=162.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~--~~~~d~~~~E~~rgiTi~~~~~~~~~~-----~~~i~~iDTPGh~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE--ETFLDVLKEERERGITIKSGVATFEWP-----DRRVNFIDTPGHE 73 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEE--EEEECCCHHHHHCCCEEEEEEEEEEEC-----CEEEEEEECCCCH
T ss_conf 989991799899999999997647235686258--885057778886384132227999989-----9899999699818
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 5289999999860456999955888883479999999873997899981767658-755556664111102683300023
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMG-ADFYRSVEMISSRLGANPLVIQLP 170 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~-~d~~~~l~~i~~~l~~~~~~~~~p 170 (701)
T Consensus 74 ~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~---- 149 (189)
T cd00881 74 DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI---- 149 (189)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCH----
T ss_conf 8999999998646856999987989987899999999976998799998971877562999999999998753210----
Q ss_pred CCCCCCCCEEEEEHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 45556653024422344311452226985138740043178899999988630023457899986327789988987300
Q gi|254780264|r 171 VGSESNFQGVIDLVEMKALLWKNEDLGSSWDVVEIPEDMKDSANSYRDKMIESIVELDDSAMDSYLQGESFSSDRIRSLI 250 (701)
Q Consensus 171 ~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lle~i~~~dd~~~~~~l~~~~~~~~~l~~~l 250 (701)
T Consensus 150 -----------------------------------------------------------------------------~~~ 152 (189)
T cd00881 150 -----------------------------------------------------------------------------STK 152 (189)
T ss_pred -----------------------------------------------------------------------------HHH
T ss_conf -----------------------------------------------------------------------------232
Q ss_pred CCEEECCEEEECCCCCEECCCCHHHHHHHHHHHCCCH
Q ss_conf 0003101003234310001221024889898717862
Q gi|254780264|r 251 RLGTISVKFFPVLCGSSFKNKGVQPLLDAVVDYLPSP 287 (701)
Q Consensus 251 ~~~~~~~~~~pv~~gsa~~~~Gv~~LLd~i~~~lPsP 287 (701)
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~p 189 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPPP 189 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 1101258877599988867869799999999768799