HHsearch alignment for GI: 254780264 and conserved domain: cd01867

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.66  E-value=3.7e-07  Score=64.68  Aligned_cols=112  Identities=23%  Similarity=0.264  Sum_probs=73.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         5 KivlvGd~~vGKTsli~r~~~--~~f~~--------~~~~T------ig~~~~~k--~v~~---~~~~i~l~iwDt~G~e   63 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSE--DSFNP--------SFIST------IGIDFKIR--TIEL---DGKKIKLQIWDTAGQE   63 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCC------CCEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf             999999999788999999960--99999--------86898------64688999--9999---9999999999899970


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf             5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK  144 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr  144 (701)
T Consensus        64 ~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl  120 (167)
T cd01867          64 RFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM  120 (167)
T ss_pred             CHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf             011667998565058899556898799999999999999866999705764212450