HHsearch alignment for GI: 254780264 and conserved domain: cd01867
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.66 E-value=3.7e-07 Score=64.68 Aligned_cols=112 Identities=23% Similarity=0.264 Sum_probs=73.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 5 KivlvGd~~vGKTsli~r~~~--~~f~~--------~~~~T------ig~~~~~k--~v~~---~~~~i~l~iwDt~G~e 63 (167)
T cd01867 5 KLLLIGDSGVGKSCLLLRFSE--DSFNP--------SFIST------IGIDFKIR--TIEL---DGKKIKLQIWDTAGQE 63 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCC------CCEEEEEE--EEEE---CCEEEEEEEEECCCCC
T ss_conf 999999999788999999960--99999--------86898------64688999--9999---9999999999899970
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHHH---HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479999-9998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~~---~~~lp~ilvINKiDr 144 (701)
T Consensus 64 ~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl 120 (167)
T cd01867 64 RFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDM 120 (167)
T ss_pred CHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 011667998565058899556898799999999999999866999705764212450