HHsearch alignment for GI: 254780264 and conserved domain: cd01870

>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.56  E-value=8e-07  Score=62.55  Aligned_cols=111  Identities=20%  Similarity=0.186  Sum_probs=74.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCC
Q ss_conf             27999868788977899999998087321422017956137808898708537640-79999607778713899981798
Q gi|254780264|r   11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPG   89 (701)
Q Consensus        11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPG   89 (701)
T Consensus         2 ~Ki~liGd~~VGKTsli~r~~~--~~F~~--------~y~----------pTi~~~~~~~i~~---~~~~v~l~iwDtaG   58 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSK--DQFPE--------VYV----------PTVFENYVADIEV---DGKQVELALWDTAG   58 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC--CCCCC--------CCC----------CCEEEEEEEEEEE---CCEEEEEEEEECCC
T ss_conf             0999999899669999999970--98999--------847----------8436899999999---99999999997776


Q ss_pred             CCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHH-HHHH--HCCCCEEEEECCCCC
Q ss_conf             755289999999860456999955888883479-999-9998--739978999817676
Q gi|254780264|r   90 HVDFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVW-RQAD--KYSVPRVIFCNKMDK  144 (701)
Q Consensus        90 H~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vl-r~~~--~~~lp~ilvINKiDr  144 (701)
T Consensus        59 ~e~~~~~~~~~~~~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL  117 (175)
T cd01870          59 QEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL  117 (175)
T ss_pred             CCCCCCCHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             61323240443148878999986598799999999999999972989989999872433