HHsearch alignment for GI: 254780264 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.32  E-value=6.6e-06  Score=56.67  Aligned_cols=112  Identities=17%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         5 KivlvGd~~VGKTsli~r~~~--~~F~~--------~y~p----------ti~~-~~~~~~~-i~~~~v~l~iwDtaG~e   62 (191)
T cd01875           5 KCVVVGDGAVGKTCLLICYTT--NAFPK--------EYIP----------TVFD-NYSAQTA-VDGRTVSLNLWDTAGQE   62 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHH--CCCCC--------CCCC----------CCCE-EEEEEEE-ECCEEEEEEEEECCCCC
T ss_conf             999999999899999999972--99998--------6466----------2100-0467899-99999999998588870


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHHH---HCCCCEEEEECCCCCC
Q ss_conf             5289999999860456999955888883479-9999998---7399789998176765
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQAD---KYSVPRVIFCNKMDKM  145 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~~---~~~lp~ilvINKiDr~  145 (701)
T Consensus        63 ~~~~~~~~~~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~  120 (191)
T cd01875          63 EYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLR  120 (191)
T ss_pred             CHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf             0356778774478689999857977889999999999999709699789998880102