HHsearch alignment for GI: 254780264 and conserved domain: cd01881
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.27 E-value=1.4e-10 Score=86.68 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.6
Q ss_pred EECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC--
Q ss_conf 986878897789999999808732142201795613780889870853764079999607778713899981798755--
Q gi|254780264|r 15 IMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD-- 92 (701)
Q Consensus 15 iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D-- 92 (701)
T Consensus 1 ivG~PNvGKSTL~N~Lt---~~~~~v~~-~p--------------gTTr~~~~g~~~~~~----~~~i~~~DtpGi~~~~ 58 (176)
T cd01881 1 LVGLPNVGKSTLLNALT---NAKPKVAN-YP--------------FTTLEPNLGVVEVPD----GARIQVADIPGLIEGA 58 (176)
T ss_pred CCCCCCCCHHHHHHHHH---CCCCEEEC-CC--------------CCEEEEEEEEEEECC----CCEEEEEECCCCCCCC
T ss_conf 96999888999999996---89960307-89--------------967612467999479----9669999578754573
Q ss_pred -----CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-------HHH----------HHCCCCEEEEECCCCCC
Q ss_conf -----289999999860456999955888883479999-------999----------87399789998176765
Q gi|254780264|r 93 -----FTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-------RQA----------DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 93 -----F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-------r~~----------~~~~lp~ilvINKiDr~ 145 (701)
T Consensus 59 ~~~~~~~~~~l~~~~~~d~il~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~ 133 (176)
T cd01881 59 SEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECC
T ss_conf 378789999998741088999999898765545445899999999999971156655543269719999686034