HHsearch alignment for GI: 254780264 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=3.5e-37 Score=257.49 Aligned_cols=132 Identities=33% Similarity=0.493 Sum_probs=115.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCC--C-------CEECCCC----EECCCHHHHHHHCCCEEEEEEEEEECCCCCC
Q ss_conf 7999868788977899999998087321--4-------2201795----6137808898708537640799996077787
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHK--I-------GEVHDGS----ATMDWMEQEQERGITITSASTTVFWPGRDGG 78 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~--~-------g~v~~g~----~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~ 78 (701)
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~----- 75 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE----- 75 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEEC-----
T ss_conf 989996689989999999999859976889999999998549987505566138987985892588589999849-----
Q ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCC-------CCHHHHHHHHHHHHCCCCE-EEEECCCCCCCCC
Q ss_conf 13899981798755289999999860456999955888-------8834799999998739978-9998176765875
Q gi|254780264|r 79 QKKLTIIDTPGHVDFTMEVERSIRVTDGAIALLDSNAG-------VEPQTETVWRQADKYSVPR-VIFCNKMDKMGAD 148 (701)
Q Consensus 79 ~~~iNlIDTPGH~DF~~Ev~~aL~~~DgailvVDa~eG-------v~~qT~~vlr~~~~~~lp~-ilvINKiDr~~~d 148 (701)
T Consensus 76 ~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~~~ 153 (219)
T cd01883 76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 936999878972667889998775316689999857675103667776599999999984997489999875368865