HHsearch alignment for GI: 254780264 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96 E-value=1.1e-27 Score=196.52 Aligned_cols=123 Identities=33% Similarity=0.342 Sum_probs=97.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 2 ~VaivG~~n~GKSTL~n~L~~~~----~----~----------~~~~~g~T~~i~~~~~~~~~--~~~~~i~~iDTPGh~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN----V----A----------AGEAGGITQHIGAFEVPAEV--LKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEECCCCCHHHHHHHHHCCC----C----C----------EEECCCCEEEECEEEEEEEE--CCCCEEEEEECCCCH
T ss_conf 89999489985989999985867----5----0----------45169816871539999882--588718999899816
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf 528999999986045699995588888347999999987399789998176765875555666
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE 154 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~ 154 (701)
T Consensus 62 ~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~ 124 (168)
T cd01887 62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKN 124 (168)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 779999999862688999986466754589999999987699789999893089879899999