HHsearch alignment for GI: 254780264 and conserved domain: cd01887

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.96  E-value=1.1e-27  Score=196.52  Aligned_cols=123  Identities=33%  Similarity=0.342  Sum_probs=97.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r   12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         2 ~VaivG~~n~GKSTL~n~L~~~~----~----~----------~~~~~g~T~~i~~~~~~~~~--~~~~~i~~iDTPGh~   61 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTN----V----A----------AGEAGGITQHIGAFEVPAEV--LKIPGITFIDTPGHE   61 (168)
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC----C----C----------EEECCCCEEEECEEEEEEEE--CCCCEEEEEECCCCH
T ss_conf             89999489985989999985867----5----0----------45169816871539999882--588718999899816


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
Q ss_conf             528999999986045699995588888347999999987399789998176765875555666
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQADKYSVPRVIFCNKMDKMGADFYRSVE  154 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~~lp~ilvINKiDr~~~d~~~~l~  154 (701)
T Consensus        62 ~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~  124 (168)
T cd01887          62 AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKN  124 (168)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf             779999999862688999986466754589999999987699789999893089879899999