HHsearch alignment for GI: 254780264 and conserved domain: cd01892
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.54 E-value=2e-06 Score=60.05 Aligned_cols=117 Identities=15% Similarity=0.014 Sum_probs=76.0
Q ss_pred HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf 25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r 9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP 88 (701)
Q Consensus 9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP 88 (701)
T Consensus 3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~---------~y~~T------i~~~~~~k--~v~v~---g~~~~L~i~Dt~ 62 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLN---------AYSPT------IKPRYAVN--TVEVY---GQEKYLILREVG 62 (169)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCCCC---------CCCCC------CCCEEEEE--EEEEC---CEEEEEEEEECC
T ss_conf 089999999999889999999964999866---------65675------46618999--99989---999999998556
Q ss_pred CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHH-HHCCCCEEEEECCCCCC
Q ss_conf 875528999999986045699995588888347-9999999-87399789998176765
Q gi|254780264|r 89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQA-DKYSVPRVIFCNKMDKM 145 (701)
Q Consensus 89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~-~~~~lp~ilvINKiDr~ 145 (701)
T Consensus 63 g~e~~~~l~~~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~ 121 (169)
T cd01892 63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 53235566588754698899999799878999999999970056898189998865542