HHsearch alignment for GI: 254780264 and conserved domain: cd01892

>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.54  E-value=2e-06  Score=60.05  Aligned_cols=117  Identities=15%  Similarity=0.014  Sum_probs=76.0

Q ss_pred             HEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf             25279998687889778999999980873214220179561378088987085376407999960777871389998179
Q gi|254780264|r    9 DSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP   88 (701)
Q Consensus         9 ~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP   88 (701)
T Consensus         3 ~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~---------~y~~T------i~~~~~~k--~v~v~---g~~~~L~i~Dt~   62 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLN---------AYSPT------IKPRYAVN--TVEVY---GQEKYLILREVG   62 (169)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCCCC---------CCCCC------CCCEEEEE--EEEEC---CEEEEEEEEECC
T ss_conf             089999999999889999999964999866---------65675------46618999--99989---999999998556


Q ss_pred             CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHH-HHCCCCEEEEECCCCCC
Q ss_conf             875528999999986045699995588888347-9999999-87399789998176765
Q gi|254780264|r   89 GHVDFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQA-DKYSVPRVIFCNKMDKM  145 (701)
Q Consensus        89 GH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~-~~~~lp~ilvINKiDr~  145 (701)
T Consensus        63 g~e~~~~l~~~~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~  121 (169)
T cd01892          63 EDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLD  121 (169)
T ss_pred             CCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             53235566588754698899999799878999999999970056898189998865542