HHsearch alignment for GI: 254780264 and conserved domain: cd01893

>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.67  E-value=5.7e-07  Score=63.47  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=74.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD   92 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D   92 (701)
T Consensus         3 iv~vGd~~VGKTsli~r~~~--~~F~------------~~~~------~t~~~~~~~~~~---~~~~v~l~i~DtaG~e~   59 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLVS--EEFP------------ENVP------RVLPEITIPADV---TPERVPTTIVDTSSRPQ   59 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHH--CCCC------------CCCC------CCCCCEEEEEEE---CCEEEEEEEEECCCCCC
T ss_conf             99999999899999999984--9788------------8777------634568999998---89099999998998723


Q ss_pred             CHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHH---HHHCCCCEEEEECCCCC
Q ss_conf             289999999860456999955888883479-99999---98739978999817676
Q gi|254780264|r   93 FTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQ---ADKYSVPRVIFCNKMDK  144 (701)
Q Consensus        93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~---~~~~~lp~ilvINKiDr  144 (701)
T Consensus        60 ~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL  115 (166)
T cd01893          60 DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL  115 (166)
T ss_pred             CCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             02457987368988999970898778999999999999986899968999988654