HHsearch alignment for GI: 254780264 and conserved domain: cd01898
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.42 E-value=7.4e-12 Score=94.84 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=68.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 79998687889778999999980873214220179561378088987085376407999960777871389998179875
Q gi|254780264|r 12 NFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 12 Nv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~---~~~~~V~~-~pgTT~--------------~~~~g~i~~~----~~~~i~~~DtpGi~ 59 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAIS---NAKPKIAD-YPFTTL--------------VPNLGVVRVD----DGRSFVVADIPGLI 59 (170)
T ss_pred CEEEECCCCCCHHHHHHHHH---CCCCEEEC-CCCCCC--------------CCEEEEEEEC----CCCEEEEECCCCCC
T ss_conf 58998999998999999996---78760325-666523--------------7447799936----98569996488644
Q ss_pred -----CC--HHHHHHHHHHHCEEEEEEECCCCCCH--HHHHHHHHHHH-----CCCCEEEEECCCCCC
Q ss_conf -----52--89999999860456999955888883--47999999987-----399789998176765
Q gi|254780264|r 92 -----DF--TMEVERSIRVTDGAIALLDSNAGVEP--QTETVWRQADK-----YSVPRVIFCNKMDKM 145 (701)
Q Consensus 92 -----DF--~~Ev~~aL~~~DgailvVDa~eGv~~--qT~~vlr~~~~-----~~lp~ilvINKiDr~ 145 (701)
T Consensus 60 ~~~~~~~~l~~~~l~~i~~advil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~ 127 (170)
T cd01898 60 EGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL 127 (170)
T ss_pred CCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCC
T ss_conf 45546622489998613345617999989987898999999999999827444038650677620242