HHsearch alignment for GI: 254780264 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.31 E-value=0.38 Score=26.08 Aligned_cols=116 Identities=17% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCCHHH
Q ss_conf 68788977899999998087321422017956137808898708537640799996077787138999817987552899
Q gi|254780264|r 17 AHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVDFTME 96 (701)
Q Consensus 17 aHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~DF~~E 96 (701)
T Consensus 7 gKgGvGkt~~~~nLa~~---la~~G~---~vll~D~D~-----g~----an----------~~~D~viiD~~aG~--~~~ 59 (139)
T cd02038 7 GKGGVGKTNISANLALA---LAKLGK---RVLLLDADL-----GL----AN----------LDYDYIIIDTGAGI--SDN 59 (139)
T ss_pred CCCCCCHHHHHHHHHHH---HHHCCC---CEEEEECCC-----CC----CC----------CCCCEEEEECCCCC--CHH
T ss_conf 99998399999999999---997899---699998989-----99----65----------79999999489998--778
Q ss_pred HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCC--CCCHHHHHHHHCCC
Q ss_conf 99999860456999955888883479999999873--99789998176765--87555566641111
Q gi|254780264|r 97 VERSIRVTDGAIALLDSNAGVEPQTETVWRQADKY--SVPRVIFCNKMDKM--GADFYRSVEMISSR 159 (701)
Q Consensus 97 v~~aL~~~DgailvVDa~eGv~~qT~~vlr~~~~~--~lp~ilvINKiDr~--~~d~~~~l~~i~~~ 159 (701)
T Consensus 60 ~~~~~~~ad~~lvV~tpeptSi~DAYalIK~l~~~~~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~k 126 (139)
T cd02038 60 VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNR 126 (139)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999995895799958970679999999999999639997599995689999999999999999999