HHsearch alignment for GI: 254780264 and conserved domain: cd03246

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.61  E-value=0.33  Score=26.52  Aligned_cols=115  Identities=21%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCEEC-CCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECC
Q ss_conf             2799986878897789999999808732-142201-79561378088987085376407999960777871389998179
Q gi|254780264|r   11 RNFGIMAHIDAGKTTTTERILYYAGKSH-KIGEVH-DGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTP   88 (701)
Q Consensus        11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~-~~g~v~-~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTP   88 (701)
T Consensus        29 ~~vaIvG~sGsGKSTLl~ll~---gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~l-f~~t----i~eNiL---   97 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLIL---GLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDEL-FSGS----IAENIL---   97 (173)
T ss_pred             CEEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEE-CCCC----HHHHCC---
T ss_conf             999999999980999999996---66667999899999993328998984208999088836-7775----899767---


Q ss_pred             CCCCCHHHHHHHH----HHHCEEEEEEE-CCCCCCHHHHHHHHHHHHC---CCCEEEEEC
Q ss_conf             8755289999999----86045699995-5888883479999999873---997899981
Q gi|254780264|r   89 GHVDFTMEVERSI----RVTDGAIALLD-SNAGVEPQTETVWRQADKY---SVPRVIFCN  140 (701)
Q Consensus        89 GH~DF~~Ev~~aL----~~~DgailvVD-a~eGv~~qT~~vlr~~~~~---~lp~ilvIN  140 (701)
T Consensus        98 ----SGGQkQRvalARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vt  153 (173)
T cd03246          98 ----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA  153 (173)
T ss_pred             ----CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             ----69999999999998279999999687668998999999999997864898999984