HHsearch alignment for GI: 254780264 and conserved domain: cd04101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.74 E-value=3.1e-07 Score=65.14 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=74.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 3 ivllGd~gVGKTsli~r~~~~~~~f~~--------~y----------~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~ 64 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNGAVFPK--------NY----------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC--------CC----------CCCCCEEEEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 999995995889999999978886688--------88----------886457889999997899799999997999840
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH-H--HHCCCCEEEEECCCCC
Q ss_conf 28999999986045699995588888347999999-9--8739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ-A--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~-~--~~~~lp~ilvINKiDr 144 (701)
T Consensus 65 ~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL 119 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDL 119 (164)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 0678999976426899997077466899999999999976689868999872244