HHsearch alignment for GI: 254780264 and conserved domain: cd04110

>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.53  E-value=1.4e-06  Score=60.96  Aligned_cols=116  Identities=23%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf             02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r    8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT   87 (701)
Q Consensus         8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT   87 (701)
T Consensus         4 d~~~KIvlvGd~~VGKTSli~r~~~--~~F~~--~------~~~T------ig~d~~~k--~v~i---~~~~v~l~iwDt   62 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFAD--NTFSG--S------YITT------IGVDFKIR--TVEI---NGERVKLQIWDT   62 (199)
T ss_pred             CEEEEEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCCC------CCEEEEEE--EEEE---CCEEEEEEEEEC
T ss_conf             7577999999799888999999950--99999--8------6897------55587899--9999---999999999989


Q ss_pred             CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf             987552899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r   88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK  144 (701)
Q Consensus        88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr  144 (701)
T Consensus        63 aGqe~~~~l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl  122 (199)
T cd04110          63 AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD  122 (199)
T ss_pred             CCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf             998123535266642465423897179889999999999999975998757999885544