HHsearch alignment for GI: 254780264 and conserved domain: cd04110
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.53 E-value=1.4e-06 Score=60.96 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=76.8
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEEC
Q ss_conf 02527999868788977899999998087321422017956137808898708537640799996077787138999817
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDT 87 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDT 87 (701)
T Consensus 4 d~~~KIvlvGd~~VGKTSli~r~~~--~~F~~--~------~~~T------ig~d~~~k--~v~i---~~~~v~l~iwDt 62 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFAD--NTFSG--S------YITT------IGVDFKIR--TVEI---NGERVKLQIWDT 62 (199)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHC--CCCCC--C------CCCC------CCEEEEEE--EEEE---CCEEEEEEEEEC
T ss_conf 7577999999799888999999950--99999--8------6897------55587899--9999---999999999989
Q ss_pred CCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf 987552899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r 88 PGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 88 PGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr 144 (701)
T Consensus 63 aGqe~~~~l~~~~~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl 122 (199)
T cd04110 63 AGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred CCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 998123535266642465423897179889999999999999975998757999885544