HHsearch alignment for GI: 254780264 and conserved domain: cd04114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.50 E-value=1.4e-06 Score=61.01 Aligned_cols=114 Identities=24% Similarity=0.251 Sum_probs=75.3
Q ss_pred HHEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE--EEEEEECCCCCCCEEEEEE
Q ss_conf 02527999868788977899999998087321422017956137808898708537640--7999960777871389998
Q gi|254780264|r 8 EDSRNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA--STTVFWPGRDGGQKKLTII 85 (701)
Q Consensus 8 e~iRNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss--~~sl~~~~~~~~~~~iNlI 85 (701)
T Consensus 5 d~~~KivllGd~~VGKTsli~r~~~--~~f~~----~----~----------~~Tig~d~~~k~i~~---~~~~v~l~iw 61 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP----G----Q----------GATIGVDFMIKTVEI---KGEKIKLQIW 61 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH--CCCCC----C----C----------CCCCCEEEEEEEEEE---CCEEEEEEEE
T ss_conf 7798999999899799999999985--98999----8----6----------774124789999999---9999999999
Q ss_pred ECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHH-HHH---HHCCCCEEEEECCCCC
Q ss_conf 1798755289999999860456999955888883479999-999---8739978999817676
Q gi|254780264|r 86 DTPGHVDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVW-RQA---DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 86 DTPGH~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vl-r~~---~~~~lp~ilvINKiDr 144 (701)
T Consensus 62 DtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL 124 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDL 124 (169)
T ss_pred ECCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
T ss_conf 899984445155777423664599814898889999999999999868988638973113434