HHsearch alignment for GI: 254780264 and conserved domain: cd04118
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.53 E-value=1.4e-06 Score=61.00 Aligned_cols=112 Identities=18% Similarity=0.084 Sum_probs=74.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~--------------f~~~-----~y~~tig~~~~~k~i~-v~~~~v~l~iwDtaG~e~ 62 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR--------------FLVG-----PYQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSER 62 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCC--------------CCCC-----CCCCCCEEEEEEEEEE-ECCEEEEEEEEECCCCHH
T ss_conf 9999969987999999998597--------------9989-----9787630588999999-999999999991999731
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr 144 (701)
T Consensus 63 ~~~l~~~y~~~a~~~ilvydit~~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL 117 (193)
T cd04118 63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 2355798834774457883069879999899999999974899997999774663