HHsearch alignment for GI: 254780264 and conserved domain: cd04118

>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.53  E-value=1.4e-06  Score=61.00  Aligned_cols=112  Identities=18%  Similarity=0.084  Sum_probs=74.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD   92 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D   92 (701)
T Consensus         3 ivlvGd~~VGKTsLi~r~~~~~--------------f~~~-----~y~~tig~~~~~k~i~-v~~~~v~l~iwDtaG~e~   62 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHHR--------------FLVG-----PYQNTIGAAFVAKRMV-VGERVVTLGIWDTAGSER   62 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC--------------CCCC-----CCCCCCEEEEEEEEEE-ECCEEEEEEEEECCCCHH
T ss_conf             9999969987999999998597--------------9989-----9787630588999999-999999999991999731


Q ss_pred             CHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HH--HHCCCCEEEEECCCCC
Q ss_conf             2899999998604569999558888834799999-99--8739978999817676
Q gi|254780264|r   93 FTMEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QA--DKYSVPRVIFCNKMDK  144 (701)
Q Consensus        93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~--~~~~lp~ilvINKiDr  144 (701)
T Consensus        63 ~~~l~~~y~~~a~~~ilvydit~~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL  117 (193)
T cd04118          63 YEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDL  117 (193)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf             2355798834774457883069879999899999999974899997999774663