HHsearch alignment for GI: 254780264 and conserved domain: cd04119
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.67 E-value=6.9e-07 Score=62.96 Aligned_cols=111 Identities=16% Similarity=0.184 Sum_probs=73.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 3 ivvvG~~~vGKTSLi~r~~~--~~f~~--------~y~pT------ig~~~~~--k~~~~~---~~~~~l~iwDt~G~~~ 61 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCE--GRFVS--------KYLPT------IGIDYGV--KKVSVR---NKEVRVNFFDLSGHPE 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--------CCCCC------CCEEEEE--EEEEEC---CEEEEEEEEECCCCHH
T ss_conf 99999599568999999963--99999--------85897------6557779--999999---9999999998999764
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHHHHH-HHHHHHH--------CCCCEEEEECCCCC
Q ss_conf 2899999998604569999558888834799-9999987--------39978999817676
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQTET-VWRQADK--------YSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~qT~~-vlr~~~~--------~~lp~ilvINKiDr 144 (701)
T Consensus 62 ~~~~~~~~~~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl 122 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred HHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 7899999987477889995089744489999999999998245345668629998540344