HHsearch alignment for GI: 254780264 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.61 E-value=7.1e-07 Score=62.89 Aligned_cols=109 Identities=24% Similarity=0.221 Sum_probs=73.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEE-EEEEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 9998687889778999999980873214220179561378088987085376-407999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITIT-SASTTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~-ss~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 4 ivllGd~~VGKTsli~r~~~--~~f~~--~------y~~----------Ti~~~~~k~i~~---~~~~~~l~iwDtaG~e 60 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFVQ--GIFVE--K------YDP----------TIEDSYRKQIEV---DGQQCMLEILDTAGTE 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CCC----------CCCCEEEEEEEE---CCEEEEEEECCCCCCH
T ss_conf 99989999889999999971--95988--6------699----------542069999999---9999999864576544
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHHH-HHHHHHH----HCCCCEEEEECCCCC
Q ss_conf 5289999999860456999955888883479-9999998----739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQTE-TVWRQAD----KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~-~vlr~~~----~~~lp~ilvINKiDr 144 (701)
T Consensus 61 ~~~~~~~~y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl 118 (163)
T cd04136 61 QFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
T ss_conf 5556789883468769997048988999999999999998618888867876235472