HHsearch alignment for GI: 254780264 and conserved domain: cd04141
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.55 E-value=9.3e-07 Score=62.11 Aligned_cols=112 Identities=19% Similarity=0.220 Sum_probs=74.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCC
Q ss_conf 27999868788977899999998087321422017956137808898708537640799996077787138999817987
Q gi|254780264|r 11 RNFGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGH 90 (701)
Q Consensus 11 RNv~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH 90 (701)
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~--~f~~--------~~~pTi~~------~~-~~--~i~i---~~~~~~l~iwDtaGq 60 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISH--SFPD--------YHDPTIED------AY-KQ--QARI---DNEPALLDILDTAGQ 60 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC--CCCC--------CCCCCCCC------CE-EE--EEEE---CCEEEEEEEEECCCC
T ss_conf 69999999997799999999709--8998--------75884222------03-69--9999---999999999978885
Q ss_pred CCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHH----H-HHCCCCEEEEECCCCC
Q ss_conf 5528999999986045699995588888347999999----9-8739978999817676
Q gi|254780264|r 91 VDFTMEVERSIRVTDGAIALLDSNAGVEPQTETVWRQ----A-DKYSVPRVIFCNKMDK 144 (701)
Q Consensus 91 ~DF~~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr~----~-~~~~lp~ilvINKiDr 144 (701)
T Consensus 61 e~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL 119 (172)
T cd04141 61 AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDL 119 (172)
T ss_pred CCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCH
T ss_conf 13574515564278656887316888899999999999999728899868998504566