HHsearch alignment for GI: 254780264 and conserved domain: cd04142
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.52 E-value=1.4e-06 Score=61.07 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=71.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 3 ivvlG~~gVGKTsli~rf~~--~~F~~--~------y~pT------ig~~~~~k~v~--~---dg~~~~l~IwDtag~~~ 61 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLA--QEFPE--E------YIPT------EHRRLYRPAVV--L---SGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH--CCCCC--C------CCCC------CCEEEEEEEEE--E---CCEEEEEEEEECCCCCC
T ss_conf 99999799899999999971--98888--7------4784------66167899999--9---99999999995877304
Q ss_pred CH--------HHHHHHHHHHCEEEEEEECCCCCCHHHHHHHH-HHH------HCCCCEEEEECCCCC
Q ss_conf 28--------99999998604569999558888834799999-998------739978999817676
Q gi|254780264|r 93 FT--------MEVERSIRVTDGAIALLDSNAGVEPQTETVWR-QAD------KYSVPRVIFCNKMDK 144 (701)
Q Consensus 93 F~--------~Ev~~aL~~~DgailvVDa~eGv~~qT~~vlr-~~~------~~~lp~ilvINKiDr 144 (701)
T Consensus 62 ~~~tagqe~~~~r~~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL 128 (198)
T cd04142 62 YPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ 128 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 5556521235556440146888999998867788899999999999985147999828998345431