HHsearch alignment for GI: 254780264 and conserved domain: cd04151
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.16 E-value=1.1e-09 Score=80.92 Aligned_cols=108 Identities=23% Similarity=0.209 Sum_probs=73.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 il~lG~~~~GKTsll~~~~--~~~~------~------~~~p-------Tig~~~~~i~~~-----~~~~~iwD~~G~e~ 55 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQ--LGEV------V------TTIP-------TIGFNVETVTYK-----NLKFQVWDLGGQTS 55 (158)
T ss_pred EEEECCCCCCHHHHHHHHH--CCCC------C------CCCC-------CCCCCEEEEEEC-----CEEEEEEECCCCCC
T ss_conf 9999999998999999997--0996------7------7578-------488246999989-----88999996798624
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCCCHH-----HHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 2899999998604569999558888834-----79999999873997899981767658
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGVEPQ-----TETVWRQADKYSVPRVIFCNKMDKMG 146 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv~~q-----T~~vlr~~~~~~lp~ilvINKiDr~~ 146 (701)
T Consensus 56 ~r~~~~~y~~~~~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~ 114 (158)
T cd04151 56 IRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred CCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 46278874667889999974578789999999999998346536981999997667765