HHsearch alignment for GI: 254780264 and conserved domain: cd04161
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.42 E-value=2.5e-06 Score=59.32 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=74.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 ililGLd~aGKTTil~~l~--~~~~~------------~~-------~PT~G~~~~~~~~~-----~~~l~~~DlgG~~~ 55 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQ--GEIPK------------KV-------APTVGFTPTKLRLD-----KYEVCIFDLGGGAN 55 (167)
T ss_pred EEEEEECCCCHHHHHHHHC--CCCCC------------CC-------CCCCCCCEEEEEEC-----CEEEEEEECCCCHH
T ss_conf 8999008998899999982--89987------------65-------08777317999989-----99999998998778
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHH----HHCCCCEEEEECCCCCCCC
Q ss_conf 2899999998604569999558888-83479999999----8739978999817676587
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQA----DKYSVPRVIFCNKMDKMGA 147 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~----~~~~lp~ilvINKiDr~~~ 147 (701)
T Consensus 56 ~R~lW~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a 115 (167)
T cd04161 56 FRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC
T ss_conf 889999873477657999855758899999999999965887789959999886576158