HHsearch alignment for GI: 254780264 and conserved domain: cd04162

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77  E-value=1.5e-07  Score=67.15  Aligned_cols=123  Identities=20%  Similarity=0.198  Sum_probs=83.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf             99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD   92 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D   92 (701)
T Consensus         2 IlilGLd~aGKTTil~~l~~--~~~------~~~--~----------~PT~Gf~~~~i~~~-----~~~l~~wDlgGq~~   56 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSS--ERS------LES--V----------VPTTGFNSVAIPTQ-----DAIMELLEIGGSQN   56 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHC--CCC------CCC--C----------CCCCCCCEEEEEEC-----CEEEEEEECCCHHH
T ss_conf             99996799989999999816--998------765--3----------56327746999989-----99999985375288


Q ss_pred             CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf             2899999998604569999558888-8347999999987--399789998176765875555666411110268
Q gi|254780264|r   93 FTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADK--YSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN  163 (701)
Q Consensus        93 F~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~--~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~  163 (701)
T Consensus        57 ~R~~W~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~---s~~ei~~~L~L~  127 (164)
T cd04162          57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELE  127 (164)
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CHHHHHHHCCCC
T ss_conf             86569987117758999995688889999999999997087998699998632433699---999999866994