HHsearch alignment for GI: 254780264 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.77 E-value=1.5e-07 Score=67.15 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=83.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCC
Q ss_conf 99986878897789999999808732142201795613780889870853764079999607778713899981798755
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSASTTVFWPGRDGGQKKLTIIDTPGHVD 92 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~sl~~~~~~~~~~~iNlIDTPGH~D 92 (701)
T Consensus 2 IlilGLd~aGKTTil~~l~~--~~~------~~~--~----------~PT~Gf~~~~i~~~-----~~~l~~wDlgGq~~ 56 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSS--ERS------LES--V----------VPTTGFNSVAIPTQ-----DAIMELLEIGGSQN 56 (164)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCC------CCC--C----------CCCCCCCEEEEEEC-----CEEEEEEECCCHHH
T ss_conf 99996799989999999816--998------765--3----------56327746999989-----99999985375288
Q ss_pred CHHHHHHHHHHHCEEEEEEECCCCC-CHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCC
Q ss_conf 2899999998604569999558888-8347999999987--399789998176765875555666411110268
Q gi|254780264|r 93 FTMEVERSIRVTDGAIALLDSNAGV-EPQTETVWRQADK--YSVPRVIFCNKMDKMGADFYRSVEMISSRLGAN 163 (701)
Q Consensus 93 F~~Ev~~aL~~~DgailvVDa~eGv-~~qT~~vlr~~~~--~~lp~ilvINKiDr~~~d~~~~l~~i~~~l~~~ 163 (701)
T Consensus 57 ~R~~W~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~---s~~ei~~~L~L~ 127 (164)
T cd04162 57 LRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELELE 127 (164)
T ss_pred HHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC---CHHHHHHHCCCC
T ss_conf 86569987117758999995688889999999999997087998699998632433699---999999866994