HHsearch alignment for GI: 254780264 and conserved domain: cd04173

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.20  E-value=3.1e-05  Score=52.32  Aligned_cols=109  Identities=14%  Similarity=0.118  Sum_probs=72.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf             999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r   13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV   91 (701)
Q Consensus        13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~   91 (701)
T Consensus         4 iVlvGD~~VGKTsLl~~f~~--~~F~~--~------y----------~pTi~~~~~~~~~v---d~~~v~L~iWDTAGqE   60 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAK--DAYPG--S------Y----------VPTVFENYTASFEI---DKRRIELNMWDTSGSS   60 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHC--CCCCC--C------C----------CCCEEEEEEEEEEE---CCEEEEEEEECCCCCC
T ss_conf             99989899898999999963--99999--8------4----------78458778999999---9999999997688850


Q ss_pred             CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf             528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r   92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK  144 (701)
Q Consensus        92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr  144 (701)
T Consensus        61 ~y~~lr~~yyr~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DL  117 (222)
T cd04173          61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDM  117 (222)
T ss_pred             HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             345567875036989999983897788999999999999985899978999587424