HHsearch alignment for GI: 254780264 and conserved domain: cd04173
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.20 E-value=3.1e-05 Score=52.32 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=72.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCCCEECCCHHHHHHHCCCEEEE-EEEEEECCCCCCCEEEEEEECCCCC
Q ss_conf 999868788977899999998087321422017956137808898708537640-7999960777871389998179875
Q gi|254780264|r 13 FGIMAHIDAGKTTTTERILYYAGKSHKIGEVHDGSATMDWMEQEQERGITITSA-STTVFWPGRDGGQKKLTIIDTPGHV 91 (701)
Q Consensus 13 v~iiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss-~~sl~~~~~~~~~~~iNlIDTPGH~ 91 (701)
T Consensus 4 iVlvGD~~VGKTsLl~~f~~--~~F~~--~------y----------~pTi~~~~~~~~~v---d~~~v~L~iWDTAGqE 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAK--DAYPG--S------Y----------VPTVFENYTASFEI---DKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHC--CCCCC--C------C----------CCCEEEEEEEEEEE---CCEEEEEEEECCCCCC
T ss_conf 99989899898999999963--99999--8------4----------78458778999999---9999999997688850
Q ss_pred CCHHHHHHHHHHHCEEEEEEECCCCCCHHH-HHHHHHHH---HCCCCEEEEECCCCC
Q ss_conf 528999999986045699995588888347-99999998---739978999817676
Q gi|254780264|r 92 DFTMEVERSIRVTDGAIALLDSNAGVEPQT-ETVWRQAD---KYSVPRVIFCNKMDK 144 (701)
Q Consensus 92 DF~~Ev~~aL~~~DgailvVDa~eGv~~qT-~~vlr~~~---~~~lp~ilvINKiDr 144 (701)
T Consensus 61 ~y~~lr~~yyr~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DL 117 (222)
T cd04173 61 YYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDM 117 (222)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 345567875036989999983897788999999999999985899978999587424